CmoCh08G005120 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G005120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	PsaB RNA-binding protein
Location	Cmo_Chr08 : 3205413 .. 3207695 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATTTTCAGTAACGATATTTTGTGGCGGAAAAAAAACGAACAAAACTGGCTTCTCTCTCTCTTACAAAGCTTATCTTACTGAGAGAGCTCCACTTCCATGGCGACCTTAAGCTTCAACCCCACTAGAATAAGAACCCCAGGGGGGCTTCACCTTTGCAAACCGAAACCTAGATCGTTACCATTTTCACAGTCGATTAAAACCCCGAAAAGATTCTCAGCCGATTTCCGTATCAATCAACAACTACTACGTCGTTTTCGATCGAATTCTGTATCGGAAAGCTCGATTTCGGTGCCGGAAGAGGTGGAGGTGGCGGTGGACGAGGATGAGGATGATCCGACTTTGGAGTTGGCCTATTTGGATTCGGAGACAGATCCTGAGAGTATTACGGAGTGGGAGCTGGATTTCTGCTCGAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGCGTGTGATAATTCGCTCTCGCTTCAGTACACGAAGTATTTTCCTAACAATGTTATTAATAGCATTACTCTGAGAGATGCGATTTCTTCGATTACTGAAGAGTTGGGGGTGCCATTACCAGAGAAAATCCGCTTCTTCAGGTACATGTTCTGATTGATTAAGCTCATTTGGATGAATCTTGTGTTCATGCATTTCAACTTCAAAATGTGTCTGAATTTGTGTCAAAAAAACCTATGATTGAGTAGCAATTTATTCGAGAATGGTGTCTCTGTCTTCATATGATAGAAATTTTGATGGGATTATAGGTCACAGATGCAGACAATTATTACAAAAGCATGTACCGAGCTTGGCGTAAAGCCCATTCCAAGTAAAAGGGTATATGAATTTATAGGTGTTATATTCACTTCAGTTTCTTGGTGAAGTAGATTGGATTTAGATTATGGATTAAACTCTCTGAGCTCAAGATTTTCCATTGCTCTATCAGTGTCTTTCCCTGCTTTTATGGCTGGAAGAACGATACGAGACTGTCTACACGCGTCATCCAGGTTTTCAGAAAGGGTCCAAGCCCCTCCTTGCATTAGATAATCCATTTCCAATGGAACTCCCAGACAATCTTTTCGGGGAGAGGTGGGCATTTGTTCAATTGCCCTTTTCAGGTAAACCAATAGCTTTTCTTCTTTATTTTGTGTTGACTCTAAACATGGCTGAAGAGTTGCTGCTTTACTACAGGATGTTGCCTATTGTTCTTATAGTTTCTCCAATAATAATTTGATCCTCCATTGATTCTCAGCTGTTCAAGAGGAGGTCTCAAACTTAAATGCAAGTTTTATGTTTGGCTCCAGTCTTGATCTGGATTTACTGGGGATCGAAATTGATGACAATACAATGATCCCAGGGTTGTCTGTTGCATCTTCACGAGCTCAACCATTGGCAGGTATACCACCACTTTAAAACCAGTTGAGCTTTGGTGATTCGGAACATATATAAACAAATGATTCACAACAAATTCGTTAATCATTCTAATTTCAATTTTCCGAGTCGATTAGATTTTTCTTCCCGAAATTTTTATACACCTATCATCGTAGTATAAAATATTTCTTTACAATCATATCGTCCATCATGAAGATTTTGTAATGTAAGAAATTGAACTCTCTGTTTCATACATGTTCCCCAAACAATACTCGCAGTATGATGAGTATAAACAATCTGCCATTTGATCTCTTTTTGTATCATTCCACAGCTTGGATGAATGGAATGGAAGTATATTCAGTTGAAGCCGATACCTCTCGTGCTTGTTTGATTCTATCCGTTGGGATCTCGACTCGATATGTCTATGCTACTTATAAAAAAAATCCAGTGACAACTGCTGAGGCTGAAGCTTGGGAAGCAGCAAAAAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGACTTGGATTCAGAGGACTGTGTTGGATTCTGGCTCCTACTAGACTTGCCACCGCCGCCAGTATAATCAGTGAAGTAGTTTCAAAATTTTCTTTTTCGCTTTAAGAAGGTAGTTAGTCGTATAAAGCATGTTAAATTTTGTAACTTGATTATTTGTTGGTTGTACAAACAAATGCATAATATAGGATAATGTTCACTTCTGGGAGATGGGATTGTTGAGCAAAGTTCTAGACCGGCAAAACTTGTGTTTGCCAATAAAAAAAAGATAAAGAAACGTGTGTTTTGTTCAATGTATCTGTTGGACGTTGAATGTGAGATCACACATTGGTTGGAGAACAAAACAAAGCATTCTTTGTTCTTTGTAAGGGTGTGGAAACCTCTCCCTAGCCGA

mRNA sequence

CAGATTTTCAGTAACGATATTTTGTGGCGGAAAAAAAACGAACAAAACTGGCTTCTCTCTCTCTTACAAAGCTTATCTTACTGAGAGAGCTCCACTTCCATGGCGACCTTAAGCTTCAACCCCACTAGAATAAGAACCCCAGGGGGGCTTCACCTTTGCAAACCGAAACCTAGATCGTTACCATTTTCACAGTCGATTAAAACCCCGAAAAGATTCTCAGCCGATTTCCGTATCAATCAACAACTACTACGTCGTTTTCGATCGAATTCTGTATCGGAAAGCTCGATTTCGGTGCCGGAAGAGGTGGAGGTGGCGGTGGACGAGGATGAGGATGATCCGACTTTGGAGTTGGCCTATTTGGATTCGGAGACAGATCCTGAGAGTATTACGGAGTGGGAGCTGGATTTCTGCTCGAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGCGTGTGATAATTCGCTCTCGCTTCAGTACACGAAGTATTTTCCTAACAATGTTATTAATAGCATTACTCTGAGAGATGCGATTTCTTCGATTACTGAAGAGTTGGGGGTGCCATTACCAGAGAAAATCCGCTTCTTCAGGTCACAGATGCAGACAATTATTACAAAAGCATGTACCGAGCTTGGCGTAAAGCCCATTCCAAGTAAAAGGTGTCTTTCCCTGCTTTTATGGCTGGAAGAACGATACGAGACTGTCTACACGCGTCATCCAGGTTTTCAGAAAGGGTCCAAGCCCCTCCTTGCATTAGATAATCCATTTCCAATGGAACTCCCAGACAATCTTTTCGGGGAGAGGTGGGCATTTGTTCAATTGCCCTTTTCAGCTGTTCAAGAGGAGGTCTCAAACTTAAATGCAAGTTTTATGTTTGGCTCCAGTCTTGATCTGGATTTACTGGGGATCGAAATTGATGACAATACAATGATCCCAGGGTTGTCTGTTGCATCTTCACGAGCTCAACCATTGGCAGCTTGGATGAATGGAATGGAAGTATATTCAGTTGAAGCCGATACCTCTCGTGCTTGTTTGATTCTATCCGTTGGGATCTCGACTCGATATGTCTATGCTACTTATAAAAAAAATCCAGTGACAACTGCTGAGGCTGAAGCTTGGGAAGCAGCAAAAAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGACTTGGATTCAGAGGACTGTGTTGGATTCTGGCTCCTACTAGACTTGCCACCGCCGCCAGTATAATCAGTGAAGTAGTTTCAAAATTTTCTTTTTCGCTTTAAGAAGGTAGTTAGTCGTATAAAGCATGTTAAATTTTGTAACTTGATTATTTGTTGGTTGTACAAACAAATGCATAATATAGGATAATGTTCACTTCTGGGAGATGGGATTGTTGAGCAAAGTTCTAGACCGGCAAAACTTGTGTTTGCCAATAAAAAAAAGATAAAGAAACGTGTGTTTTGTTCAATGTATCTGTTGGACGTTGAATGTGAGATCACACATTGGTTGGAGAACAAAACAAAGCATTCTTTGTTCTTTGTAAGGGTGTGGAAACCTCTCCCTAGCCGA

Coding sequence (CDS)

ATGGCGACCTTAAGCTTCAACCCCACTAGAATAAGAACCCCAGGGGGGCTTCACCTTTGCAAACCGAAACCTAGATCGTTACCATTTTCACAGTCGATTAAAACCCCGAAAAGATTCTCAGCCGATTTCCGTATCAATCAACAACTACTACGTCGTTTTCGATCGAATTCTGTATCGGAAAGCTCGATTTCGGTGCCGGAAGAGGTGGAGGTGGCGGTGGACGAGGATGAGGATGATCCGACTTTGGAGTTGGCCTATTTGGATTCGGAGACAGATCCTGAGAGTATTACGGAGTGGGAGCTGGATTTCTGCTCGAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGCGTGTGATAATTCGCTCTCGCTTCAGTACACGAAGTATTTTCCTAACAATGTTATTAATAGCATTACTCTGAGAGATGCGATTTCTTCGATTACTGAAGAGTTGGGGGTGCCATTACCAGAGAAAATCCGCTTCTTCAGGTCACAGATGCAGACAATTATTACAAAAGCATGTACCGAGCTTGGCGTAAAGCCCATTCCAAGTAAAAGGTGTCTTTCCCTGCTTTTATGGCTGGAAGAACGATACGAGACTGTCTACACGCGTCATCCAGGTTTTCAGAAAGGGTCCAAGCCCCTCCTTGCATTAGATAATCCATTTCCAATGGAACTCCCAGACAATCTTTTCGGGGAGAGGTGGGCATTTGTTCAATTGCCCTTTTCAGCTGTTCAAGAGGAGGTCTCAAACTTAAATGCAAGTTTTATGTTTGGCTCCAGTCTTGATCTGGATTTACTGGGGATCGAAATTGATGACAATACAATGATCCCAGGGTTGTCTGTTGCATCTTCACGAGCTCAACCATTGGCAGCTTGGATGAATGGAATGGAAGTATATTCAGTTGAAGCCGATACCTCTCGTGCTTGTTTGATTCTATCCGTTGGGATCTCGACTCGATATGTCTATGCTACTTATAAAAAAAATCCAGTGACAACTGCTGAGGCTGAAGCTTGGGAAGCAGCAAAAAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGACTTGGATTCAGAGGACTGTGTTGGATTCTGGCTCCTACTAGACTTGCCACCGCCGCCAGTATAA

Homology

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BLAST of CmoCh08G005120 vs. TrEMBL
Match: A0A0A0K8A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G427090 PE=4 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 7.9e-196
Identity = 343/381 (90.03%), Postives = 359/381 (94.23%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MATLSFNPTRIRT GGLH  K KP   PFSQSIKT  RFSA+ RI+QQ L RFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60

Query: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS++ PEEVE  ++EDEDDPTLE+AYLDSETDPESITEWELDFCSRPILDIRGKKVWELV
Sbjct: 61  SSVTAPEEVE--LNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CDNSLSLQYTKYFPNNVINSITLRDA+SSI EELGVPLP+KIRFFRSQMQTIITKACTE
Sbjct: 121 VCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTE 180

Query: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240
           LG+KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGERWA
Sbjct: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWA 240

Query: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300
           FVQLPFSAVQEE+SNL  +FMFGSSLDLDLLGIEIDD TMIPGLSVA+SRAQPLAAWMNG
Sbjct: 241 FVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           MEVYSVEADTSRA LILSVGI+TRYVYATYKK PVT+AEAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 MEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 382
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 379

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BLAST of CmoCh08G005120 vs. TrEMBL
Match: A0A0D2MZQ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G171600 PE=4 SV=1)

HSP 1 Score: 597.8 bits (1540), Expect = 9.2e-168
Identity = 293/389 (75.32%), Postives = 335/389 (86.12%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKP--------KPRSLPFSQSIKTPKRFSADFRINQQLLRR 60
           MATLSFN TRI++P  L   KP        KP ++PF    KT  +           L  
Sbjct: 21  MATLSFNSTRIKSPS-LQSHKPFSKSHFSTKPNNVPFLFPSKTHPQ-----------LHH 80

Query: 61  FRSNSVSESSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIR 120
           F+ NS+SESS+SVPEE     D +EDDPT EL+YLDSETDP S+TEWELDFCSRPILDIR
Sbjct: 81  FKPNSISESSVSVPEEA--FDDAEEDDPTSELSYLDSETDPSSVTEWELDFCSRPILDIR 140

Query: 121 GKKVWELVACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQT 180
           GKK+WELV CD+SLSLQYTKYFPNNVINS+TL+DA+ +I+E+LGVPLPEK+RFFRSQMQT
Sbjct: 141 GKKIWELVVCDSSLSLQYTKYFPNNVINSVTLKDAMETISEDLGVPLPEKVRFFRSQMQT 200

Query: 181 IITKACTELGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPD 240
           IITK+C ELG+KP+PSKRCLSLLLWLEERYET+Y RHPGFQKGSKPLLALDNPFPMELP+
Sbjct: 201 IITKSCKELGIKPVPSKRCLSLLLWLEERYETIYMRHPGFQKGSKPLLALDNPFPMELPE 260

Query: 241 NLFGERWAFVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQ 300
           NLFGE+WAFVQLPFSA++EE+S+L+  F+FG+ LDLDLLGIE+D+NT+IPGL+VASSRA+
Sbjct: 261 NLFGEKWAFVQLPFSAIREEISSLDERFVFGAGLDLDLLGIEVDENTLIPGLAVASSRAK 320

Query: 301 PLAAWMNGMEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGG 360
           PLAAWMNG+EV SVEADTSR CLILSVGISTRYVYATYKK P TT+EAEAWEAAKKACGG
Sbjct: 321 PLAAWMNGLEVCSVEADTSRGCLILSVGISTRYVYATYKKTPTTTSEAEAWEAAKKACGG 380

Query: 361 LHFLAIQDDLDSEDCVGFWLLLDLPPPPV 382
           LHFLAIQ+DLDS+DCVGFWLLLDLPPPPV
Sbjct: 381 LHFLAIQEDLDSDDCVGFWLLLDLPPPPV 395

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BLAST of CmoCh08G005120 vs. TrEMBL
Match: A0A067JPT1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25397 PE=4 SV=1)

HSP 1 Score: 597.0 bits (1538), Expect = 1.6e-167
Identity = 300/381 (78.74%), Postives = 327/381 (85.83%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MATL FNPTRI         KP  +   FS+S K   R              F+ N++S+
Sbjct: 1   MATLIFNPTRIPQ-------KPIFKITSFSKSTKISLRCFLKPTKTNHKYHCFQPNTISK 60

Query: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
            S+S  EEVEV  + +EDDPT E++YLD ETDPESI EWELDFCSRPILDIRGKKVWELV
Sbjct: 61  LSVSTQEEVEVE-NYEEDDPTAEMSYLDPETDPESIIEWELDFCSRPILDIRGKKVWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CD+SLSLQYTKYFPNNVINSITL+DAI SI+E+LGVPLPEKIRFFRSQMQTIITKAC E
Sbjct: 121 VCDDSLSLQYTKYFPNNVINSITLKDAILSISEDLGVPLPEKIRFFRSQMQTIITKACKE 180

Query: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240
           L +KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGE+WA
Sbjct: 181 LDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300
           FVQLPFSAVQ E S+L  SFMFG+SLDLDLLGIEI D T+IPGL+VASSRA+PLAAWMNG
Sbjct: 241 FVQLPFSAVQREASSLETSFMFGASLDLDLLGIEIGDKTLIPGLAVASSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           +EVYS+EADTSRACLILSVGISTRY+YATYKK PVTTAEAEAWEAAKKACGGLHFLAIQ+
Sbjct: 301 LEVYSIEADTSRACLILSVGISTRYIYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQE 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 382
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 373

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BLAST of CmoCh08G005120 vs. TrEMBL
Match: A0A059AEC8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01211 PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 2.0e-167
Identity = 294/384 (76.56%), Postives = 333/384 (86.72%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MA LSFNP R+RTP  L   +P      F +    P R       NQ+L  RF+ NSVSE
Sbjct: 1   MAGLSFNPARVRTPP-LQPHQPISNFASFPKFTDLPHRTPRGLARNQRLAHRFQLNSVSE 60

Query: 61  SSISVPEEVEVAVDE---DEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVW 120
           SS+S  +E E+  +E   ++DDPT EL+YLD ETDPESI+ WELDFCSRPILDIRGKKVW
Sbjct: 61  SSVSTEKEPELDEEEPGQEDDDPTAELSYLDPETDPESISAWELDFCSRPILDIRGKKVW 120

Query: 121 ELVACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKA 180
           ELV CD+SLSLQYTKYFPNNVINSITL+DAI SI++ELGVPLPEKIR+FRSQMQTIITK+
Sbjct: 121 ELVVCDDSLSLQYTKYFPNNVINSITLKDAIVSISDELGVPLPEKIRYFRSQMQTIITKS 180

Query: 181 CTELGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGE 240
           C EL +KPIPSKRC+SLLLWLEERYETVYTRHPGFQKGSKPL+ALDNPFPMELP+NLFGE
Sbjct: 181 CKELSIKPIPSKRCVSLLLWLEERYETVYTRHPGFQKGSKPLMALDNPFPMELPENLFGE 240

Query: 241 RWAFVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAW 300
           +WAFVQLP+SAV+EE+S L+  ++FGS LDLDLLGIEIDDNT+IPGL+VASSRA+PLAAW
Sbjct: 241 KWAFVQLPYSAVREEISGLDTRYVFGSGLDLDLLGIEIDDNTLIPGLAVASSRAKPLAAW 300

Query: 301 MNGMEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLA 360
           MNG+EV S+EADTSRA LILSVGISTRYVYATYKKNPVTT EAEAWE+AKK+CGGLHFLA
Sbjct: 301 MNGLEVSSIEADTSRASLILSVGISTRYVYATYKKNPVTTTEAEAWESAKKSCGGLHFLA 360

Query: 361 IQDDLDSEDCVGFWLLLDLPPPPV 382
           IQ+DLDS+DCVGFWLLLDLPPPPV
Sbjct: 361 IQEDLDSDDCVGFWLLLDLPPPPV 383

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BLAST of CmoCh08G005120 vs. TrEMBL
Match: F6HBA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00650 PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 2.0e-167
Identity = 293/381 (76.90%), Postives = 333/381 (87.40%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MA LS NPT+I TP  L   KP  R    +   KT  +F  +       L  FR +SVSE
Sbjct: 1   MAGLSLNPTKITTPT-LQSHKPIYRFNSLTNPTKTQLKFPTNPAKTHPKLLHFRHSSVSE 60

Query: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS+SVP+EVEV  D++EDDPT E+ YLD ETDPESI+EWELDFCSRPILDIRGKK+WEL+
Sbjct: 61  SSVSVPKEVEV--DDEEDDPTSEMNYLDRETDPESISEWELDFCSRPILDIRGKKIWELL 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CD+SLSLQYTKYFPNNVINS+TL++AI SI++EL VPLPEKIRFFRSQMQTI+TKAC E
Sbjct: 121 VCDSSLSLQYTKYFPNNVINSVTLKNAIESISDELDVPLPEKIRFFRSQMQTIVTKACKE 180

Query: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240
           LG+KPIPSKRCLSL+LWLEERYETVYTRHPGFQ+GSKPLL LDNPFPM+LP+NLFGE+WA
Sbjct: 181 LGIKPIPSKRCLSLILWLEERYETVYTRHPGFQQGSKPLLTLDNPFPMQLPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300
           FVQLPFSAVQEEVS+L    +FG+SLDLDLLGIE+D NT+IPGL+VASSRA+PLAAWMNG
Sbjct: 241 FVQLPFSAVQEEVSSLETRLVFGASLDLDLLGIEVDANTLIPGLAVASSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           +EV S+EADT+RACLILSVGISTRY+YATYKK PVTT+EAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 LEVCSIEADTARACLILSVGISTRYIYATYKKTPVTTSEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 382
           DL+S+DCVGFWLLLDLPPPPV
Sbjct: 361 DLNSDDCVGFWLLLDLPPPPV 378

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BLAST of CmoCh08G005120 vs. TAIR10
Match: AT3G08010.1 (AT3G08010.1 RNA binding)

HSP 1 Score: 565.5 bits (1456), Expect = 2.5e-161
Identity = 278/381 (72.97%), Postives = 327/381 (85.83%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MATL FN  RI+TP    +  PKP S  F++ IKT   FS++  + +    RF S S+ E
Sbjct: 1   MATLGFNTRRIQTPSLPRI--PKPSS--FTKPIKTHHLFSSETLLKRC---RFVSRSLPE 60

Query: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS+S+ +E EVA + +EDDPT EL+YLD E+D +SI EWELDFCSRPILD RGKK+WELV
Sbjct: 61  SSLSITKEQEVANEVEEDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CD SLSLQ TKYFPNNVINSITL+DAI +IT++LGVPLPEKIRFFRSQMQTIITKAC E
Sbjct: 121 VCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKE 180

Query: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240
           L +K +PSKRCLSL LWL+ERY+TVYTRHPGFQKGS PLL+LDNPFPM LP+NLFGE+WA
Sbjct: 181 LAIKAVPSKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300
           FVQLP+SAV+EE+S+ +  F+FG+SLDLDLLGIE+D+NT+IPGLSVA+SRA+PLAAWMNG
Sbjct: 241 FVQLPYSAVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           +EV S+EAD+S+ CLILSVGI+TRYVYATYKK PVTT EAEAWE+AKK  GGLHFLAIQD
Sbjct: 301 LEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 382
           DLDS+DCVGFWLL+DLPPPPV
Sbjct: 361 DLDSDDCVGFWLLIDLPPPPV 374

[Close]

BLAST of CmoCh08G005120 vs. NCBI nr
Match: gi|659122759|ref|XP_008461309.1| (PREDICTED: uncharacterized protein LOC103499936 [Cucumis melo])

HSP 1 Score: 699.5 bits (1804), Expect = 3.2e-198
Identity = 348/381 (91.34%), Postives = 362/381 (95.01%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MATLSFNPTRIRT  GLH  K KP S PFSQSIKT  RFSA+ RI+QQ LRRF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS+SVPEEVE  ++EDEDDPTLE+AYLDSETDPESITEWELDFCSRPILDIRGKKVWELV
Sbjct: 61  SSVSVPEEVE--LNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CDNSLSLQYTKYFPNNVINSITLRDAISSI EELGVPLPEKIRFFRSQMQTIITKACTE
Sbjct: 121 VCDNSLSLQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKIRFFRSQMQTIITKACTE 180

Query: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240
           LG+KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGERWA
Sbjct: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWA 240

Query: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300
           FVQLPFSAVQEE+SNL  +FMFGSSLDLDLLGI+IDD TMIPGLSVA+SRAQPLAAWMNG
Sbjct: 241 FVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           MEVYSVEADTSRACLILSVGI+TRYVYATYKK PVTTAEAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 MEVYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 382
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of CmoCh08G005120 vs. NCBI nr
Match: gi|449436313|ref|XP_004135937.1| (PREDICTED: uncharacterized protein LOC101208052 [Cucumis sativus])

HSP 1 Score: 691.0 bits (1782), Expect = 1.1e-195
Identity = 343/381 (90.03%), Postives = 359/381 (94.23%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MATLSFNPTRIRT GGLH  K KP   PFSQSIKT  RFSA+ RI+QQ L RFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60

Query: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SS++ PEEVE  ++EDEDDPTLE+AYLDSETDPESITEWELDFCSRPILDIRGKKVWELV
Sbjct: 61  SSVTAPEEVE--LNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CDNSLSLQYTKYFPNNVINSITLRDA+SSI EELGVPLP+KIRFFRSQMQTIITKACTE
Sbjct: 121 VCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTE 180

Query: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240
           LG+KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGERWA
Sbjct: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWA 240

Query: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300
           FVQLPFSAVQEE+SNL  +FMFGSSLDLDLLGIEIDD TMIPGLSVA+SRAQPLAAWMNG
Sbjct: 241 FVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           MEVYSVEADTSRA LILSVGI+TRYVYATYKK PVT+AEAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 MEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 382
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of CmoCh08G005120 vs. NCBI nr
Match: gi|823151211|ref|XP_012475432.1| (PREDICTED: uncharacterized protein LOC105791764 isoform X1 [Gossypium raimondii])

HSP 1 Score: 597.8 bits (1540), Expect = 1.3e-167
Identity = 293/389 (75.32%), Postives = 335/389 (86.12%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKP--------KPRSLPFSQSIKTPKRFSADFRINQQLLRR 60
           MATLSFN TRI++P  L   KP        KP ++PF    KT  +           L  
Sbjct: 1   MATLSFNSTRIKSPS-LQSHKPFSKSHFSTKPNNVPFLFPSKTHPQ-----------LHH 60

Query: 61  FRSNSVSESSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIR 120
           F+ NS+SESS+SVPEE     D +EDDPT EL+YLDSETDP S+TEWELDFCSRPILDIR
Sbjct: 61  FKPNSISESSVSVPEEA--FDDAEEDDPTSELSYLDSETDPSSVTEWELDFCSRPILDIR 120

Query: 121 GKKVWELVACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQT 180
           GKK+WELV CD+SLSLQYTKYFPNNVINS+TL+DA+ +I+E+LGVPLPEK+RFFRSQMQT
Sbjct: 121 GKKIWELVVCDSSLSLQYTKYFPNNVINSVTLKDAMETISEDLGVPLPEKVRFFRSQMQT 180

Query: 181 IITKACTELGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPD 240
           IITK+C ELG+KP+PSKRCLSLLLWLEERYET+Y RHPGFQKGSKPLLALDNPFPMELP+
Sbjct: 181 IITKSCKELGIKPVPSKRCLSLLLWLEERYETIYMRHPGFQKGSKPLLALDNPFPMELPE 240

Query: 241 NLFGERWAFVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQ 300
           NLFGE+WAFVQLPFSA++EE+S+L+  F+FG+ LDLDLLGIE+D+NT+IPGL+VASSRA+
Sbjct: 241 NLFGEKWAFVQLPFSAIREEISSLDERFVFGAGLDLDLLGIEVDENTLIPGLAVASSRAK 300

Query: 301 PLAAWMNGMEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGG 360
           PLAAWMNG+EV SVEADTSR CLILSVGISTRYVYATYKK P TT+EAEAWEAAKKACGG
Sbjct: 301 PLAAWMNGLEVCSVEADTSRGCLILSVGISTRYVYATYKKTPTTTSEAEAWEAAKKACGG 360

Query: 361 LHFLAIQDDLDSEDCVGFWLLLDLPPPPV 382
           LHFLAIQ+DLDS+DCVGFWLLLDLPPPPV
Sbjct: 361 LHFLAIQEDLDSDDCVGFWLLLDLPPPPV 375

[Close]

BLAST of CmoCh08G005120 vs. NCBI nr
Match: gi|763757671|gb|KJB25002.1| (hypothetical protein B456_004G171600 [Gossypium raimondii])

HSP 1 Score: 597.8 bits (1540), Expect = 1.3e-167
Identity = 293/389 (75.32%), Postives = 335/389 (86.12%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKP--------KPRSLPFSQSIKTPKRFSADFRINQQLLRR 60
           MATLSFN TRI++P  L   KP        KP ++PF    KT  +           L  
Sbjct: 21  MATLSFNSTRIKSPS-LQSHKPFSKSHFSTKPNNVPFLFPSKTHPQ-----------LHH 80

Query: 61  FRSNSVSESSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIR 120
           F+ NS+SESS+SVPEE     D +EDDPT EL+YLDSETDP S+TEWELDFCSRPILDIR
Sbjct: 81  FKPNSISESSVSVPEEA--FDDAEEDDPTSELSYLDSETDPSSVTEWELDFCSRPILDIR 140

Query: 121 GKKVWELVACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQT 180
           GKK+WELV CD+SLSLQYTKYFPNNVINS+TL+DA+ +I+E+LGVPLPEK+RFFRSQMQT
Sbjct: 141 GKKIWELVVCDSSLSLQYTKYFPNNVINSVTLKDAMETISEDLGVPLPEKVRFFRSQMQT 200

Query: 181 IITKACTELGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPD 240
           IITK+C ELG+KP+PSKRCLSLLLWLEERYET+Y RHPGFQKGSKPLLALDNPFPMELP+
Sbjct: 201 IITKSCKELGIKPVPSKRCLSLLLWLEERYETIYMRHPGFQKGSKPLLALDNPFPMELPE 260

Query: 241 NLFGERWAFVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQ 300
           NLFGE+WAFVQLPFSA++EE+S+L+  F+FG+ LDLDLLGIE+D+NT+IPGL+VASSRA+
Sbjct: 261 NLFGEKWAFVQLPFSAIREEISSLDERFVFGAGLDLDLLGIEVDENTLIPGLAVASSRAK 320

Query: 301 PLAAWMNGMEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGG 360
           PLAAWMNG+EV SVEADTSR CLILSVGISTRYVYATYKK P TT+EAEAWEAAKKACGG
Sbjct: 321 PLAAWMNGLEVCSVEADTSRGCLILSVGISTRYVYATYKKTPTTTSEAEAWEAAKKACGG 380

Query: 361 LHFLAIQDDLDSEDCVGFWLLLDLPPPPV 382
           LHFLAIQ+DLDS+DCVGFWLLLDLPPPPV
Sbjct: 381 LHFLAIQEDLDSDDCVGFWLLLDLPPPPV 395

[Close]

BLAST of CmoCh08G005120 vs. NCBI nr
Match: gi|802749664|ref|XP_012087622.1| (PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas])

HSP 1 Score: 597.0 bits (1538), Expect = 2.2e-167
Identity = 300/381 (78.74%), Postives = 327/381 (85.83%), Query Frame = 1


Query: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVSE 60
           MATL FNPTRI         KP  +   FS+S K   R              F+ N++S+
Sbjct: 1   MATLIFNPTRIPQ-------KPIFKITSFSKSTKISLRCFLKPTKTNHKYHCFQPNTISK 60

Query: 61  SSISVPEEVEVAVDEDEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
            S+S  EEVEV  + +EDDPT E++YLD ETDPESI EWELDFCSRPILDIRGKKVWELV
Sbjct: 61  LSVSTQEEVEVE-NYEEDDPTAEMSYLDPETDPESIIEWELDFCSRPILDIRGKKVWELV 120

Query: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180
            CD+SLSLQYTKYFPNNVINSITL+DAI SI+E+LGVPLPEKIRFFRSQMQTIITKAC E
Sbjct: 121 VCDDSLSLQYTKYFPNNVINSITLKDAILSISEDLGVPLPEKIRFFRSQMQTIITKACKE 180

Query: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240
           L +KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGE+WA
Sbjct: 181 LDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300
           FVQLPFSAVQ E S+L  SFMFG+SLDLDLLGIEI D T+IPGL+VASSRA+PLAAWMNG
Sbjct: 241 FVQLPFSAVQREASSLETSFMFGASLDLDLLGIEIGDKTLIPGLAVASSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360
           +EVYS+EADTSRACLILSVGISTRY+YATYKK PVTTAEAEAWEAAKKACGGLHFLAIQ+
Sbjct: 301 LEVYSIEADTSRACLILSVGISTRYIYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQE 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 382
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 373

The following BLAST results are available for this feature:

BLAST of CmoCh08G005120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G005120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8A7_CUCSA	7.9e-196	90.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G427090 PE=4 SV=1	[more]
A0A0D2MZQ3_GOSRA	9.2e-168	75.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G171600 PE=4 SV=1	[more]
A0A067JPT1_JATCU	1.6e-167	78.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25397 PE=4 SV=1	[more]
A0A059AEC8_EUCGR	2.0e-167	76.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01211 PE=4 SV=1	[more]
F6HBA5_VITVI	2.0e-167	76.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00650 PE=4 SV=...	[more]

BLAST of CmoCh08G005120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08010.1	2.5e-161	72.97	RNA binding	[more]

BLAST of CmoCh08G005120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122759\|ref\|XP_008461309.1\|	3.2e-198	91.34	PREDICTED: uncharacterized protein LOC103499936 [Cucumis melo]	[more]
gi\|449436313\|ref\|XP_004135937.1\|	1.1e-195	90.03	PREDICTED: uncharacterized protein LOC101208052 [Cucumis sativus]	[more]
gi\|823151211\|ref\|XP_012475432.1\|	1.3e-167	75.32	PREDICTED: uncharacterized protein LOC105791764 isoform X1 [Gossypium raimondii]	[more]
gi\|763757671\|gb\|KJB25002.1\|	1.3e-167	75.32	hypothetical protein B456_004G171600 [Gossypium raimondii]	[more]
gi\|802749664\|ref\|XP_012087622.1\|	2.2e-167	78.74	PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009472	Tab2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0008150	biological_process
biological_process	GO:0006412	translation
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0016556	mRNA modification
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019761	glucosinolate biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G005120.1	CmoCh08G005120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009472	Protein of unknown function DUF1092	PFAM	PF06485	DUF1092	coord: 99..373 score: 3.9
None	No IPR available	PANTHER	PTHR34556	FAMILY NOT NAMED	coord: 3..381 score: 1.3E
None	No IPR available	PANTHER	PTHR34556:SF2	F17A17.35 PROTEIN	coord: 3..381 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G005120	Cucsa.127960	Cucumber (Gy14) v1	cgycmoB0342
CmoCh08G005120	CmaCh08G005210	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G005120	Cla015250	Watermelon (97103) v1	cmowmB838
CmoCh08G005120	Csa7G427090	Cucumber (Chinese Long) v2	cmocuB900
CmoCh08G005120	MELO3C023560	Melon (DHL92) v3.5.1	cmomeB808
CmoCh08G005120	ClCG09G004060	Watermelon (Charleston Gray)	cmowcgB780
CmoCh08G005120	CSPI07G19160	Wild cucumber (PI 183967)	cmocpiB913
CmoCh08G005120	Lsi02G025640	Bottle gourd (USVL1VR-Ls)	cmolsiB809
CmoCh08G005120	Cp4.1LG17g08070	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G005120	MELO3C023560.2	Melon (DHL92) v3.6.1	cmomedB911
CmoCh08G005120	CsaV3_7G030960	Cucumber (Chinese Long) v3	cmocucB1066
CmoCh08G005120	Cla97C09G166320	Watermelon (97103) v2	cmowmbB911
CmoCh08G005120	Bhi09G000542	Wax gourd	cmowgoB1126
CmoCh08G005120	CsGy7G017510	Cucumber (Gy14) v2	cgybcmoB955
CmoCh08G005120	Carg13436	Silver-seed gourd	carcmoB0610

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G005120	Wild cucumber (PI 183967)	cmocpiB884
CmoCh08G005120	Cucumber (Chinese Long) v2	cmocuB873
CmoCh08G005120	Melon (DHL92) v3.5.1	cmomeB824
CmoCh08G005120	Watermelon (Charleston Gray)	cmowcgB790
CmoCh08G005120	Watermelon (97103) v1	cmowmB849
CmoCh08G005120	Cucurbita pepo (Zucchini)	cmocpeB839
CmoCh08G005120	Cucurbita pepo (Zucchini)	cmocpeB858
CmoCh08G005120	Cucurbita pepo (Zucchini)	cmocpeB861
CmoCh08G005120	Bottle gourd (USVL1VR-Ls)	cmolsiB817
CmoCh08G005120	Cucumber (Gy14) v2	cgybcmoB422
CmoCh08G005120	Melon (DHL92) v3.6.1	cmomedB932
CmoCh08G005120	Silver-seed gourd	carcmoB0482
CmoCh08G005120	Silver-seed gourd	carcmoB1034
CmoCh08G005120	Silver-seed gourd	carcmoB1107
CmoCh08G005120	Cucumber (Chinese Long) v3	cmocucB1034
CmoCh08G005120	Watermelon (97103) v2	cmowmbB881
CmoCh08G005120	Wax gourd	cmowgoB1082
CmoCh08G005120	Cucurbita moschata (Rifu)	cmocmoB229
CmoCh08G005120	Cucurbita moschata (Rifu)	cmocmoB319
CmoCh08G005120	Cucurbita moschata (Rifu)	cmocmoB378
CmoCh08G005120	Cucurbita maxima (Rimu)	cmacmoB276
CmoCh08G005120	Cucurbita maxima (Rimu)	cmacmoB374
CmoCh08G005120	Cucurbita maxima (Rimu)	cmacmoB490