CsaV3_7G028040 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAATTTTAAACATACCAAATGAATTTAACAAGATTAATAAATTTAAAATTTGAAAAAGTAAATAAATAAAATTAATTGGGAAATGACTCCACCCTAAACATAAAAAATTACTTATATATAGAAATAAAAATTATTTTGCTAATCAATCCAAATAGTTGGAAGACACCAAAAATAATGCTTATAACATATAATCTTGGAGGTTTTTGAGAATCGCTTTGTACCTATTGTTTTAGAAGGCAAGTCGGGACGAGTAAGTTCCATGGCAAGCGGCGGCACGCAACCGTACAAACCCTACCGGCACCTGAAAACCTTGACGGCACACACTCGCGCCGTCTCCTGTGTCAAATTCTCCAACGATGGAACTCTCTTAGCTTCTGCCTCTCTCGACAAAACCCTTATCATCTGGTCTTCCTCTTCCCTCACTCTCCGCCACCGCCTCGTCGGCCATTCTGAAGGCATCTCCGATCTCGCCTGGTCTTCCGATTCTCATTACATTTGCTCCGCCTCCGACGATCGCACTCTCCGTATCTGGGACGCCCGTTCTCCCACCGGCGAGTGCGTCAAAACCCTACGAGGCCATTCCGATTTTGTATTCTGCGTCAATTTCAATCCTCAATCCAATCTTATTGTCTCGGGCTCCTTCGATGAGACTATTCGCATTTGGGAGGTGAAGACTGGGAAGTGTCTTCATGTTATAAGGGCTCATTCTATGCCTGTTACTTCTGTTCATTTTAATCGTGATGGTTCGCTTATTGTTTCTGGGAGTCATGATGGTTCTTGTAAGATTTGGGATGCTTCTAGTGGGACTTGCCTGAAGACTCTTATTGATGATAAAGTCCCAGCTGTTTCTTTTGCTAAGTTCTCTCCTAATGGCAAGTTCATACTTGTTGCTACACTCAATGATACCCTTGTAAGTTCTCAAACTCAGGTCTTGTGCTTGTTGTGGTTTTAGTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAATTGTTTTCTTGATGATACGATTCTGTCGGCTGATTGATTTTTGAATCCAACTCAGTGAGATTGCTGGTAATGCTCAAATGGTATCTTATAGAATGAAATTTGATAAACCTTCCTTCTGTTTTAACCCCATTGTATCCTGAAATTCCAGTTAACCCCAAACAGTGCAGACTCCACCTATGAGATATCGGGATAGTTTATTTCCTAACGCATTTGCATCTCTTTGCCATGATCTGATGATCTACAGTTGGGAAAGAAAATAAAAGGTTATTGAATGAGTTCTTATTTGAATGTCGAAGGGGGAACCATCTTTGGGTTGGTTAAGTCTCTAGCAACCGTGCACATTGTCAACTTCTTAGGAAATTAGATGAGGATTGATTTCTTAAAGATTTTACCTTCCCTAGCGAAATTAGGTTGGGATTGATTAAAAAATTATGTAGTGGTGTGGTTGATCAAACCAGTTACTGTGGCATTTTAAGATCAGAGGTTTTGATGTAGTACAGATAAATTTGGGGTTTTGGGAAGAGTAGTAATCCCTTTGTATTCTTGATGATAAGCCAAATTAGAAGCCTAGGAATTAGGATAGTAAGGTTTTATAGGAGTAGGATGTTCGAAAATCCTGGATTAATTAGATTCTGAAATCATTGTAAACTTATTATATCTGCAAGATATGAGATTATGACCACTTACTGGCGTTTTCATACTCTATAGTATTTGATAGACAATTTTTGGAATATCAAATCTATCAACACTATAACATCTAGCTAAAGTTTATCCTGTCTTTAGTCAATTTGAAGATTTGCAGTTATGTTAGTTCTAGTCGTCTTCTTAATTTGTTCTACAAGAGCCCATGAACTATATGCAGTACATAGTTAAGACTATATGGTTTTTTTATGTGAAAACCAGCTTCCGTGGAGATAAATGGAAGAATATACAAAATTCAACCAAAGAAGCCACCCAGAAACTAAACCAATTTTACAAAAAATGGGCTCCAATCCAGAATGCCAAGGCCTAAAGGATAGGCTTTTTCCGAAGTATAAGATGGGAAAACTCAGACTATTTGGTTATGATGGCTAATTTCTATTTTATTTTATATTTTTTTAGAAAAATTTTAGGGGCTTGTGACTTTCATGGAAGTAAATATTAATTCAGAGTTGTGAATGTTCTGTTGCCTAGATCAATTTAGCCCTTCTTTGCAACTTAGTAGGAGCGGAAAAACTATTAAATTTTGTTGGGTGAGGATGTCATCACATACTTTTGTTTGTATTCTTAGACTTATTAAATGCAACTTCATGTTCGTATTTTGAATACAATTGTCTATGCCTTTTCTTATTAGAAATTCACATTTTCTGTTATTTCATATTTTTGTTTTTGTGGGTGCAGAAGCTATGGAACTACTCAGCTGGAAAGTTTTTGAAGATATATACAGGACATGTAAATCGAGTCCATTGTGTTGTGTCCACATTTTCTGTCACCAATGGAAAATACATTGTTAGCGGATCGGAGGACAAATGTGTGTATATATGGGATCTACAGCAGAAAACTATGATTCAGAAACTCGAAGGTCACACGGATGTTGTCATTTCTGTGTCTTGCCATCCAACGGAGAACAAAATTGCATCTGCAGGACTTGATGGGGATAGATCAGTTAGAGTTTGGGTTCAAGATCCATGACATCCATATTTTTCATCATCTTTGCATATCTAACTTCCGAGGCAAGTTAAAGAAACAAAACTAAAACCAATAGAGAAGGTTCGTTTTCATGTGAATTTGATGCTGAATAATGTTTTCGTCGTGTACTGGACAACAACTGGGCATCGCTGATCAATTTCACTGGCAGTTGTATATACGAAGACTAAAGACACACAGGTAAAGAGTTTCATATGCTTAGTATTAATTGTATTTGTAGAGGAAAAACAACAAAGCTATAATAAAGTTGTAATTTTAATTCATTCTTAGCCCAGAATCAGACAGAAATTGGGCAGTACTTGTTATTTGAAGAAATTAGGAATGCTTACAAATAACTTTTCTAAGTATAATATTCACCTAATAAATGATTCTATGTTATTTACAAACTTGGAAGTTTTTAGAAGTTTAATAAGAGCGTGGTATTACAAACTTGGCTC ATGGCAAGCGGCGGCACGCAACCGTACAAACCCTACCGGCACCTGAAAACCTTGACGGCACACACTCGCGCCGTCTCCTGTGTCAAATTCTCCAACGATGGAACTCTCTTAGCTTCTGCCTCTCTCGACAAAACCCTTATCATCTGGTCTTCCTCTTCCCTCACTCTCCGCCACCGCCTCGTCGGCCATTCTGAAGGCATCTCCGATCTCGCCTGGTCTTCCGATTCTCATTACATTTGCTCCGCCTCCGACGATCGCACTCTCCGTATCTGGGACGCCCGTTCTCCCACCGGCGAGTGCGTCAAAACCCTACGAGGCCATTCCGATTTTGTATTCTGCGTCAATTTCAATCCTCAATCCAATCTTATTGTCTCGGGCTCCTTCGATGAGACTATTCGCATTTGGGAGGTGAAGACTGGGAAGTGTCTTCATGTTATAAGGGCTCATTCTATGCCTGTTACTTCTGTTCATTTTAATCGTGATGGTTCGCTTATTGTTTCTGGGAGTCATGATGGTTCTTGTAAGATTTGGGATGCTTCTAGTGGGACTTGCCTGAAGACTCTTATTGATGATAAAGTCCCAGCTGTTTCTTTTGCTAAGTTCTCTCCTAATGGCAAGTTCATACTTGTTGCTACACTCAATGATACCCTTAAGCTATGGAACTACTCAGCTGGAAAGTTTTTGAAGATATATACAGGACATGTAAATCGAGTCCATTGTGTTGTGTCCACATTTTCTGTCACCAATGGAAAATACATTGTTAGCGGATCGGAGGACAAATGTGTGTATATATGGGATCTACAGCAGAAAACTATGATTCAGAAACTCGAAGGTCACACGGATGTTGTCATTTCTGTGTCTTGCCATCCAACGGAGAACAAAATTGCATCTGCAGGACTTGATGGGGATAGATCAGTTAGAGTTTGGGTTCAAGATCCATGA ATGGCAAGCGGCGGCACGCAACCGTACAAACCCTACCGGCACCTGAAAACCTTGACGGCACACACTCGCGCCGTCTCCTGTGTCAAATTCTCCAACGATGGAACTCTCTTAGCTTCTGCCTCTCTCGACAAAACCCTTATCATCTGGTCTTCCTCTTCCCTCACTCTCCGCCACCGCCTCGTCGGCCATTCTGAAGGCATCTCCGATCTCGCCTGGTCTTCCGATTCTCATTACATTTGCTCCGCCTCCGACGATCGCACTCTCCGTATCTGGGACGCCCGTTCTCCCACCGGCGAGTGCGTCAAAACCCTACGAGGCCATTCCGATTTTGTATTCTGCGTCAATTTCAATCCTCAATCCAATCTTATTGTCTCGGGCTCCTTCGATGAGACTATTCGCATTTGGGAGGTGAAGACTGGGAAGTGTCTTCATGTTATAAGGGCTCATTCTATGCCTGTTACTTCTGTTCATTTTAATCGTGATGGTTCGCTTATTGTTTCTGGGAGTCATGATGGTTCTTGTAAGATTTGGGATGCTTCTAGTGGGACTTGCCTGAAGACTCTTATTGATGATAAAGTCCCAGCTGTTTCTTTTGCTAAGTTCTCTCCTAATGGCAAGTTCATACTTGTTGCTACACTCAATGATACCCTTAAGCTATGGAACTACTCAGCTGGAAAGTTTTTGAAGATATATACAGGACATGTAAATCGAGTCCATTGTGTTGTGTCCACATTTTCTGTCACCAATGGAAAATACATTGTTAGCGGATCGGAGGACAAATGTGTGTATATATGGGATCTACAGCAGAAAACTATGATTCAGAAACTCGAAGGTCACACGGATGTTGTCATTTCTGTGTCTTGCCATCCAACGGAGAACAAAATTGCATCTGCAGGACTTGATGGGGATAGATCAGTTAGAGTTTGGGTTCAAGATCCATGA MASGGTQPYKPYRHLKTLTAHTRAVSCVKFSNDGTLLASASLDKTLIIWSSSSLTLRHRLVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARSPTGECVKTLRGHSDFVFCVNFNPQSNLIVSGSFDETIRIWEVKTGKCLHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDASSGTCLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYSAGKFLKIYTGHVNRVHCVVSTFSVTNGKYIVSGSEDKCVYIWDLQQKTMIQKLEGHTDVVISVSCHPTENKIASAGLDGDRSVRVWVQDP
BLAST of CsaV3_7G028040 vs. NCBI nr
Match: XP_011659300.1 (PREDICTED: COMPASS-like H3K4 histone methylase component WDR5B [Cucumis sativus] >KGN44807.1 hypothetical protein Csa_7G388400 [Cucumis sativus]) HSP 1 Score: 330.9 bits (847), Expect = 4.8e-87 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. NCBI nr
Match: XP_008451347.1 (PREDICTED: COMPASS-like H3K4 histone methylase component WDR5B [Cucumis melo]) HSP 1 Score: 329.7 bits (844), Expect = 1.1e-86 Identity = 312/313 (99.68%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. NCBI nr
Match: XP_022960443.1 (COMPASS-like H3K4 histone methylase component WDR5B [Cucurbita moschata] >XP_023514520.1 COMPASS-like H3K4 histone methylase component WDR5B [Cucurbita pepo subsp. pepo]) HSP 1 Score: 317.8 bits (813), Expect = 4.2e-83 Identity = 309/315 (98.10%), Postives = 310/315 (98.41%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. NCBI nr
Match: XP_023004736.1 (COMPASS-like H3K4 histone methylase component WDR5B [Cucurbita maxima]) HSP 1 Score: 314.3 bits (804), Expect = 4.7e-82 Identity = 307/315 (97.46%), Postives = 309/315 (98.10%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. NCBI nr
Match: XP_022150234.1 (COMPASS-like H3K4 histone methylase component WDR5B [Momordica charantia]) HSP 1 Score: 292.0 bits (746), Expect = 2.5e-75 Identity = 293/316 (92.72%), Postives = 302/316 (95.57%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TAIR10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein) HSP 1 Score: 215.3 bits (547), Expect = 5.3e-56 Identity = 220/304 (72.37%), Postives = 247/304 (81.25%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TAIR10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein) HSP 1 Score: 74.3 bits (181), Expect = 1.5e-13 Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TAIR10
Match: AT5G08560.1 (transducin family protein / WD-40 repeat family protein) HSP 1 Score: 70.9 bits (172), Expect = 1.6e-12 Identity = 43/113 (38.05%), Postives = 57/113 (50.44%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TAIR10
Match: AT5G43920.1 (transducin family protein / WD-40 repeat family protein) HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10 Identity = 35/110 (31.82%), Postives = 62/110 (56.36%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TAIR10
Match: AT1G79990.1 (structural molecules) HSP 1 Score: 61.6 bits (148), Expect = 9.9e-10 Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. Swiss-Prot
Match: sp|Q9SY00|WDR5B_ARATH (COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana OX=3702 GN=WDR5B PE=1 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 9.6e-55 Identity = 220/304 (72.37%), Postives = 247/304 (81.25%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. Swiss-Prot
Match: sp|Q54KL5|WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr5 PE=3 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.3e-24 Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. Swiss-Prot
Match: sp|Q5M786|WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis OX=8364 GN=wdr5 PE=2 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.3e-24 Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. Swiss-Prot
Match: sp|Q2KIG2|WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus OX=9913 GN=WDR5 PE=2 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 3.3e-23 Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. Swiss-Prot
Match: sp|P61964|WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens OX=9606 GN=WDR5 PE=1 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 3.3e-23 Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TrEMBL
Match: tr|A0A0A0K8V6|A0A0A0K8V6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G388400 PE=4 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 3.2e-87 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TrEMBL
Match: tr|A0A1S3BRB8|A0A1S3BRB8_CUCME (COMPASS-like H3K4 histone methylase component WDR5B OS=Cucumis melo OX=3656 GN=LOC103492662 PE=4 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 7.1e-87 Identity = 312/313 (99.68%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TrEMBL
Match: tr|A0A1S3UYT6|A0A1S3UYT6_VIGRR (COMPASS-like H3K4 histone methylase component WDR5B OS=Vigna radiata var. radiata OX=3916 GN=LOC106769944 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 4.8e-67 Identity = 224/309 (72.49%), Postives = 238/309 (77.02%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TrEMBL
Match: tr|A0A0L9TX13|A0A0L9TX13_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g118600 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 2.4e-66 Identity = 223/308 (72.40%), Postives = 237/308 (76.95%), Query Frame = 0
BLAST of CsaV3_7G028040 vs. TrEMBL
Match: tr|A0A0S3SRZ3|A0A0S3SRZ3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G235100 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 2.4e-66 Identity = 223/308 (72.40%), Postives = 237/308 (76.95%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |