CsaV3_7G023460 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023460
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 12510117 .. 12511553 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTACTGTGATAGGCTACTGTGCTAGCTTATGTCTATATATCTGGTAGTAGGACTTCATAGATTTTTCAAGGAACTGAGCAAAGGAGAAACTTGATTTTCAGCGTGAAGTGATTCCAAAATATGAAGGGCCTTATCTTCATCAATGTCTTCCTGCTTGCGTTGGTAATTAGCCATTCCATTTATGTGTATTATCCATTTGATAACAACTTTGTTATAATTCTGAAGAGATATATAGCATTCATTATCAAGACCACTAACCATTTGCATGTGACTGATTTAAATCGATATATTGAATTATTATTGCGCATTATTAATCAAATTTTAGTGTACTAAAACAAGAACATCTAATTGGAATGCTCACAATTCCTTTATTTTTTTCTCTTTGCTCCTTTTGTGGTGAATTTAGTTTGCAGGTACCATAGAATCAAGGCATGAGCCAGGAGATCACCATTGGAGAAATTTGATGAAGGATAAAATGGATGATTGTACTGAAACTTTAAAGGTTGAAGATGGAAAGCTTTTTATTGAGCCTCGGCCACAAGCCACATTTCATGGTGATGTCCAAACGAAAATTCTTTCCAAAGACTTAGAACAACGACCAAGTGTCTCATTTCGTCCAGATGACACCAGAACAAAGCTTTTTGTCGAACATATAGAACTATCACCGAGTATCAAATTTTATCCTCATGAAATCAAAGCAAAGTTAGATAAAGATACAGATGTTCCACCAAGAACCTTAATTTATCTCAATGATATCAAATCCAATTTTTTTGTCAAAGATATAGAACGACAACTAAGAGCAAGATTTTATCGTGATGATAACAAAAGAAAGTTGGCCAAGGATATAGAACCACGACCAAATGTTTCATTTTATCCAGATGACACCAAAACAAAGCTCTTCGCTGAAGATTTAGAACCACGACCAAATGTCTCATTTTATCCCGATGACGAAACCAAAACAAAGCTCTTCGCTGAAGATGTAGAACCACGACCAAATCTCTCATTTTATCCCGATGACGAAACCAAAACAAAACTTTTTGCTGAAGATGTAGAACCACGGCCAAATGTCTCATTTTATCCCGATGATGACACTAAAACAAAGCTTTTTGTTGAAGATGTAGAACCACGACCAAATGTTTCATTCTATCCTGATGACGAAACCAAAACAAAACTTTTTGCTGAAGATGTAGAACCACGACCAAATTCCTTCTTTTATCCTGATGATGACATTAAAACAAAGCTTTTGGTTCAAGAAATAGAGCCTCGACCAAATGTTTCATTTTATCCAGACGATGACACCAAAACAAAGCTTCTTGCTGAAGATATTGAACCACGACCAAATGTCTCATTTTATCCCGACAATCTAAAAGCCAAAGAGCAGCTCTCGGCTCATTCTCACCATGGGGAAGCTGGTTTGCAGGTGGCACAAGCTTAA

mRNA sequence

ATGAAGGGCCTTATCTTCATCAATGTCTTCCTGCTTGCGTTGTTTGCAGGTACCATAGAATCAAGGCATGAGCCAGGAGATCACCATTGGAGAAATTTGATGAAGGATAAAATGGATGATTGTACTGAAACTTTAAAGGTTGAAGATGGAAAGCTTTTTATTGAGCCTCGGCCACAAGCCACATTTCATGGTGATGTCCAAACGAAAATTCTTTCCAAAGACTTAGAACAACGACCAAGTGTCTCATTTCGTCCAGATGACACCAGAACAAAGCTTTTTGTCGAACATATAGAACTATCACCGAGTATCAAATTTTATCCTCATGAAATCAAAGCAAAGTTAGATAAAGATACAGATGTTCCACCAAGAACCTTAATTTATCTCAATGATATCAAATCCAATTTTTTTGTCAAAGATATAGAACGACAACTAAGAGCAAGATTTTATCGTGATGATAACAAAAGAAAGTTGGCCAAGGATATAGAACCACGACCAAATGTTTCATTTTATCCAGATGACACCAAAACAAAGCTCTTCGCTGAAGATTTAGAACCACGACCAAATGTCTCATTTTATCCCGATGACGAAACCAAAACAAAGCTCTTCGCTGAAGATGTAGAACCACGACCAAATCTCTCATTTTATCCCGATGACGAAACCAAAACAAAACTTTTTGCTGAAGATGTAGAACCACGGCCAAATGTCTCATTTTATCCCGATGATGACACTAAAACAAAGCTTTTTGTTGAAGATGTAGAACCACGACCAAATGTTTCATTCTATCCTGATGACGAAACCAAAACAAAACTTTTTGCTGAAGATGTAGAACCACGACCAAATTCCTTCTTTTATCCTGATGATGACATTAAAACAAAGCTTTTGGTTCAAGAAATAGAGCCTCGACCAAATGTTTCATTTTATCCAGACGATGACACCAAAACAAAGCTTCTTGCTGAAGATATTGAACCACGACCAAATGTCTCATTTTATCCCGACAATCTAAAAGCCAAAGAGCAGCTCTCGGCTCATTCTCACCATGGGGAAGCTGGTTTGCAGGTGGCACAAGCTTAA

Coding sequence (CDS)

ATGAAGGGCCTTATCTTCATCAATGTCTTCCTGCTTGCGTTGTTTGCAGGTACCATAGAATCAAGGCATGAGCCAGGAGATCACCATTGGAGAAATTTGATGAAGGATAAAATGGATGATTGTACTGAAACTTTAAAGGTTGAAGATGGAAAGCTTTTTATTGAGCCTCGGCCACAAGCCACATTTCATGGTGATGTCCAAACGAAAATTCTTTCCAAAGACTTAGAACAACGACCAAGTGTCTCATTTCGTCCAGATGACACCAGAACAAAGCTTTTTGTCGAACATATAGAACTATCACCGAGTATCAAATTTTATCCTCATGAAATCAAAGCAAAGTTAGATAAAGATACAGATGTTCCACCAAGAACCTTAATTTATCTCAATGATATCAAATCCAATTTTTTTGTCAAAGATATAGAACGACAACTAAGAGCAAGATTTTATCGTGATGATAACAAAAGAAAGTTGGCCAAGGATATAGAACCACGACCAAATGTTTCATTTTATCCAGATGACACCAAAACAAAGCTCTTCGCTGAAGATTTAGAACCACGACCAAATGTCTCATTTTATCCCGATGACGAAACCAAAACAAAGCTCTTCGCTGAAGATGTAGAACCACGACCAAATCTCTCATTTTATCCCGATGACGAAACCAAAACAAAACTTTTTGCTGAAGATGTAGAACCACGGCCAAATGTCTCATTTTATCCCGATGATGACACTAAAACAAAGCTTTTTGTTGAAGATGTAGAACCACGACCAAATGTTTCATTCTATCCTGATGACGAAACCAAAACAAAACTTTTTGCTGAAGATGTAGAACCACGACCAAATTCCTTCTTTTATCCTGATGATGACATTAAAACAAAGCTTTTGGTTCAAGAAATAGAGCCTCGACCAAATGTTTCATTTTATCCAGACGATGACACCAAAACAAAGCTTCTTGCTGAAGATATTGAACCACGACCAAATGTCTCATTTTATCCCGACAATCTAAAAGCCAAAGAGCAGCTCTCGGCTCATTCTCACCATGGGGAAGCTGGTTTGCAGGTGGCACAAGCTTAA

Protein sequence

MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKMDDCTETLKVEDGKLFIEPRPQATFHGDVQTKILSKDLEQRPSVSFRPDDTRTKLFVEHIELSPSIKFYPHEIKAKLDKDTDVPPRTLIYLNDIKSNFFVKDIERQLRARFYRDDNKRKLAKDIEPRPNVSFYPDDTKTKLFAEDLEPRPNVSFYPDDETKTKLFAEDVEPRPNLSFYPDDETKTKLFAEDVEPRPNVSFYPDDDTKTKLFVEDVEPRPNVSFYPDDETKTKLFAEDVEPRPNSFFYPDDDIKTKLLVQEIEPRPNVSFYPDDDTKTKLLAEDIEPRPNVSFYPDNLKAKEQLSAHSHHGEAGLQVAQA
Homology
[Close]
BLAST of CsaV3_7G023460 vs. NCBI nr
Match: XP_004151481.2 (PREDICTED: uncharacterized protein LOC101212185 [Cucumis sativus] >KGN44339.1 hypothetical protein Csa_7G259390 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKMDDCTETLKVEDGKLFIEPRPQA 60
          MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKMDDCTETLKVEDGKLFIEPRPQA
Sbjct: 1  MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKMDDCTETLKVEDGKLFIEPRPQA 60

Query: 61 TFHGDVQTKILSKDLEQRPSVSFRPD 87
          TFHGDVQTKILSKDLEQRPSVSFRPD
Sbjct: 61 TFHGDVQTKILSKDLEQRPSVSFRPD 86

[Close]
BLAST of CsaV3_7G023460 vs. NCBI nr
Match: XP_008447040.1 (PREDICTED: uncharacterized protein LOC103489593 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-29
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0 

Query: 1  MKGLIFINVFLLALFAGTIESRHEPGDH-HWRNLMKDKMDDCTETLKVEDGKLFIEPRPQ 60
          MKGL FINVFLLALFA TIESRHEPG+H HWRNLMKDKMDDCTETLKVEDGKLF+EPRPQ
Sbjct: 1  MKGLFFINVFLLALFADTIESRHEPGNHYHWRNLMKDKMDDCTETLKVEDGKLFVEPRPQ 60

Query: 61 ATFHGD-VQTKILSKD 75
          ATF+GD V TKILSKD
Sbjct: 61 ATFNGDVVMTKILSKD 76

[Close]
BLAST of CsaV3_7G023460 vs. NCBI nr
Match: XP_022952152.1 (organ-specific protein S2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 100.9 bits (250), Expect = 9.2e-18
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 1  MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKM---------------------- 60
          MKGL+FIN FLL L A TIESRHEPGDHHWRN + +K+                      
Sbjct: 1  MKGLVFINFFLLILLANTIESRHEPGDHHWRNFIDNKLLHEDIEEFIHSDPNSLLSEKET 60

Query: 61 DDCTETLKVEDGKLFI---EPRPQATFHGDV 67
          +DCTETLK+EDGKLF+   EPRPQATF  DV
Sbjct: 61 EDCTETLKIEDGKLFVKNLEPRPQATFDSDV 91

[Close]
BLAST of CsaV3_7G023460 vs. NCBI nr
Match: XP_022952153.1 (organ-specific protein S2-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 100.9 bits (250), Expect = 9.2e-18
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 1  MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKM---------------------- 60
          MKGL+FIN FLL L A TIESRHEPGDHHWRN + +K+                      
Sbjct: 1  MKGLVFINFFLLILLANTIESRHEPGDHHWRNFIDNKLLHEDIEEFIHSDPNSLLSEKET 60

Query: 61 DDCTETLKVEDGKLFI---EPRPQATFHGDV 67
          +DCTETLK+EDGKLF+   EPRPQATF  DV
Sbjct: 61 EDCTETLKIEDGKLFVKNLEPRPQATFDSDV 91

[Close]
BLAST of CsaV3_7G023460 vs. NCBI nr
Match: XP_022952150.1 (uncharacterized protein LOC111454914 isoform X1 [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-17
Identity = 51/91 (56.04%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 1  MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDK----------------------M 60
          MKGL+FIN FLL L A TIESR+EPGDHHWRN + DK                      M
Sbjct: 1  MKGLVFINFFLLILLANTIESRYEPGDHHWRNFIDDKSLREKIGEFIQSYPNSLLSEKEM 60

Query: 61 DDCTETLKVEDGKLFI---EPRPQATFHGDV 67
          +DCT TLK+EDGKLF+   EPRPQATF  DV
Sbjct: 61 EDCTGTLKLEDGKLFVKNLEPRPQATFDSDV 91

[Close]
BLAST of CsaV3_7G023460 vs. TrEMBL
Match: tr|A0A0A0K5Y0|A0A0A0K5Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259390 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 7.1e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKMDDCTETLKVEDGKLFIEPRPQA 60
          MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKMDDCTETLKVEDGKLFIEPRPQA
Sbjct: 1  MKGLIFINVFLLALFAGTIESRHEPGDHHWRNLMKDKMDDCTETLKVEDGKLFIEPRPQA 60

Query: 61 TFHGDVQTKILSKDLEQRPSVSFRPD 87
          TFHGDVQTKILSKDLEQRPSVSFRPD
Sbjct: 61 TFHGDVQTKILSKDLEQRPSVSFRPD 86

[Close]
BLAST of CsaV3_7G023460 vs. TrEMBL
Match: tr|A0A1S3BHC5|A0A1S3BHC5_CUCME (uncharacterized protein LOC103489593 OS=Cucumis melo OX=3656 GN=LOC103489593 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-29
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0 

Query: 1  MKGLIFINVFLLALFAGTIESRHEPGDH-HWRNLMKDKMDDCTETLKVEDGKLFIEPRPQ 60
          MKGL FINVFLLALFA TIESRHEPG+H HWRNLMKDKMDDCTETLKVEDGKLF+EPRPQ
Sbjct: 1  MKGLFFINVFLLALFADTIESRHEPGNHYHWRNLMKDKMDDCTETLKVEDGKLFVEPRPQ 60

Query: 61 ATFHGD-VQTKILSKD 75
          ATF+GD V TKILSKD
Sbjct: 61 ATFNGDVVMTKILSKD 76

The following BLAST results are available for this feature:
BLAST of CsaV3_7G023460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151481.21.1e-42100.00PREDICTED: uncharacterized protein LOC101212185 [Cucumis sativus] >KGN44339.1 hy... [more]
XP_008447040.13.0e-2989.47PREDICTED: uncharacterized protein LOC103489593 [Cucumis melo][more]
XP_022952152.19.2e-1856.04organ-specific protein S2-like isoform X2 [Cucurbita moschata][more]
XP_022952153.19.2e-1856.04organ-specific protein S2-like isoform X3 [Cucurbita moschata][more]
XP_022952150.16.0e-1756.04uncharacterized protein LOC111454914 isoform X1 [Cucurbita moschata][more]
BLAST of CsaV3_7G023460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023460 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5Y0|A0A0A0K5Y0_CUCSA7.1e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259390 PE=4 SV=1[more]
tr|A0A1S3BHC5|A0A1S3BHC5_CUCME2.0e-2989.47uncharacterized protein LOC103489593 OS=Cucumis melo OX=3656 GN=LOC103489593 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024489Organ_specific_prot
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G023460.1CsaV3_7G023460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024489Organ specific proteinPFAMPF10950Organ_specificcoord: 266..330
e-value: 8.3E-11
score: 42.5
coord: 132..192
e-value: 3.1E-9
score: 37.5
coord: 158..215
e-value: 8.4E-11
score: 42.5
coord: 220..282
e-value: 2.3E-10
score: 41.1
coord: 174..238
e-value: 9.2E-12
score: 45.6
coord: 197..261
e-value: 1.2E-11
score: 45.2
IPR024489Organ specific proteinPRODOMPD010796coord: 160..215
e-value: 0.001
score: 101.0
coord: 228..330
e-value: 5.0E-5
score: 113.0
NoneNo IPR availablePANTHERPTHR33731:SF1SUBFAMILY NOT NAMEDcoord: 268..336
coord: 4..222
coord: 133..262
NoneNo IPR availablePANTHERPTHR33731:SF1SUBFAMILY NOT NAMEDcoord: 222..290
NoneNo IPR availablePANTHERPTHR33731FAMILY NOT NAMEDcoord: 268..336
coord: 133..262
NoneNo IPR availablePANTHERPTHR33731FAMILY NOT NAMEDcoord: 222..290
coord: 4..222

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G023460CSPI07G11510Wild cucumber (PI 183967)cpicucB414
CsaV3_7G023460Cucsa.240450Cucumber (Gy14) v1cgycucB367
CsaV3_7G023460CmaCh11G011050Cucurbita maxima (Rimu)cmacucB0178
CsaV3_7G023460CmaCh19G006570Cucurbita maxima (Rimu)cmacucB0641
CsaV3_7G023460CmoCh11G011330Cucurbita moschata (Rifu)cmocucB0163
CsaV3_7G023460CmoCh19G006680Cucurbita moschata (Rifu)cmocucB0625
CsaV3_7G023460Cp4.1LG15g05280Cucurbita pepo (Zucchini)cpecucB0325
CsaV3_7G023460Cp4.1LG04g00830Cucurbita pepo (Zucchini)cpecucB0871
CsaV3_7G023460CsGy7G010770Cucumber (Gy14) v2cgybcucB347
CsaV3_7G023460Cla015936Watermelon (97103) v1cucwmB636
CsaV3_7G023460MELO3C012540Melon (DHL92) v3.5.1cucmeB551
CsaV3_7G023460ClCG02G005110Watermelon (Charleston Gray)cucwcgB573
CsaV3_7G023460Lsi11G010890Bottle gourd (USVL1VR-Ls)cuclsiB531
CsaV3_7G023460MELO3C012540.2Melon (DHL92) v3.6.1cucmedB539
CsaV3_7G023460Cla97C02G032060Watermelon (97103) v2cucwmbB551
CsaV3_7G023460Bhi05G001081Wax gourdcucwgoB689
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G023460Cucumber (Chinese Long) v3cuccucB102
CsaV3_7G023460Silver-seed gourdcarcucB0931
CsaV3_7G023460Cucumber (Gy14) v2cgybcucB097
CsaV3_7G023460Cucumber (Gy14) v1cgycucB142
CsaV3_7G023460Cucurbita maxima (Rimu)cmacucB0772
CsaV3_7G023460Cucurbita moschata (Rifu)cmocucB0758
CsaV3_7G023460Cucurbita pepo (Zucchini)cpecucB0950
CsaV3_7G023460Wild cucumber (PI 183967)cpicucB120
CsaV3_7G023460Bottle gourd (USVL1VR-Ls)cuclsiB526
CsaV3_7G023460Watermelon (Charleston Gray)cucwcgB560
CsaV3_7G023460Watermelon (97103) v1cucwmB642
CsaV3_7G023460Watermelon (97103) v2cucwmbB541
CsaV3_7G023460Wax gourdcucwgoB709