Cla97C02G032060 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G032060
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Organ specific protein
Location	Cla97Chr02 : 5096829 .. 5097986 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCAAACCAACCTTTGAAATCACTCTCTTTTTGCTTCTTTTGGTATGAATTTCTTTTTTATCACTCTTTTTATTTGTTGTGAGTATTTTTTTTAAAAGGATAATTGTTGGTTTTTCTGTTTGTAACCTTCATTTCCAATATATTAGAAACTTGTTTATTTTTCCAAAATAAATAGTCTTGAAAGAATCTAGAAAATAGTAATAATCTCTCATCATATTCTTTAGTAATAATCTCTCATCATATTCTTTCTTCTTTTTTTTTTTTTCATGGTGGGGCATTTAGCTTGTCAACAGCATTGAGTCAAGGTATGAACCAGGAGGACAATGGAGATATGTGATTGCAGATGAACCATTACCAGTAGAAGTGACTAAAGAAAACGAAGATTGCCTTGAAGACAAAAAGCTTAGAAATGAAAAGTATTTTCTCAAGGATATAGAACCACGACCAAGTGCCACTTTCTATCCAGATCATGATTCTAAATACAAGCTTTTTCCTAAAGATATTGAACCACGACCAAGTATCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATGATGTGCAAGCCAAGATTTTCGCTCAAGATATTGAACCACGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATAATGTGCAAACCAAGATTTTCGCTAAAGATATTGAACCACGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATGATGTGCAAACCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGCTTTTCGCTAAAGATATGAACCATGACCAAGTACCACATTCTACACAGATAACACAAGCTTAA

mRNA sequence

ATGAAGATCAAACCAACCTTTGAAATCACTCTCTTTTTGCTTCTTTTGCTTGTCAACAGCATTGAGTCAAGGTATGAACCAGGAGGACAATGGAGATATGTGATTGCAGATGAACCATTACCAGTAGAAGTGACTAAAGAAAACGAAGATTGCCTTGAAGACAAAAAGCTTAGAAATGAAAAGTATTTTCTCAAGGATATAGAACCACGACCAAGTGCCACTTTCTATCCAGATCATGATTCTAAATACAAGCTTTTTCCTAAAGATATTGAACCACGACCAAGTATCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATGATGTGCAAGCCAAGATTTTCGCTCAAGATATTGAACCACGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATAATGTGCAAACCAAGATTTTCGCTAAAGATATTGAACCACGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATGATGTGCAAACCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGCTTTTCGCTAAAGATATGAACCATGACCAAGTACCACATTCTACACAGATAACACAAGCTTAA

Coding sequence (CDS)

ATGAAGATCAAACCAACCTTTGAAATCACTCTCTTTTTGCTTCTTTTGCTTGTCAACAGCATTGAGTCAAGGTATGAACCAGGAGGACAATGGAGATATGTGATTGCAGATGAACCATTACCAGTAGAAGTGACTAAAGAAAACGAAGATTGCCTTGAAGACAAAAAGCTTAGAAATGAAAAGTATTTTCTCAAGGATATAGAACCACGACCAAGTGCCACTTTCTATCCAGATCATGATTCTAAATACAAGCTTTTTCCTAAAGATATTGAACCACGACCAAGTATCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATGATGTGCAAGCCAAGATTTTCGCTCAAGATATTGAACCACGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATAATGTGCAAACCAAGATTTTCGCTAAAGATATTGAACCACGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAGATGATGATGCCAAGGACAAGCTTTTTACTAAAGATATTGAGCCACGACCAAGTACCACGTTTTACCCAAATGATGTGCAAACCAAGATTTTCGCTAAAGATATTGAACCGCGACCAAGTACCACGTTCTACCCAAATGGTGTGCAAGCCAAGCTTTTCGCTAAAGATATGAACCATGACCAAGTACCACATTCTACACAGATAACACAAGCTTAA

Protein sequence

MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLEDKKLRNEKYFLKDIEPRPSATFYPDHDSKYKLFPKDIEPRPSITFYPDDDAKDKLFTKDIEPRPSTTFYPNDVQAKIFAQDIEPRPSTTFYPNGVQAKIFAKDIEPRPSTTFYPDDDAKDKLFTKDIEPRPSTTFYPNNVQTKIFAKDIEPRPSTTFYPNGVQAKIFAKDIEPRPSTTFYPDDDAKDKLFTKDIEPRPSTTFYPNDVQTKIFAKDIEPRPSTTFYPNGVQAKLFAKDMNHDQVPHSTQITQA

Homology

[Close]

BLAST of Cla97C02G032060 vs. NCBI nr
Match: KGN44341.1 (hypothetical protein Csa_7G262900 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-21
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLEDKKLRNE 60
          MKIKPTF ITLFLLLL  N IESRYEPGGQW+ VI D+ LPV V++E EDC + K L+NE
Sbjct: 1  MKIKPTFGITLFLLLLFFNGIESRYEPGGQWKNVIEDDSLPV-VSQEKEDCFKYKSLKNE 60

Query: 61 KYFLKDIEPRPSATFYPDHDSK 83
            F  DI+PRPS TFYP+  SK
Sbjct: 61 NTFFNDIKPRPSITFYPNDGSK 81

[Close]

BLAST of Cla97C02G032060 vs. NCBI nr
Match: XP_022135727.1 (uncharacterized protein LOC111007618 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1  MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLED-KKLRN 60
          MKI P FEI LFLLLLLV+ IESRYEPGG WR  + D+PLP E TKE EDCLE   +L N
Sbjct: 1  MKISPIFEIALFLLLLLVSCIESRYEPGGHWRNGMEDKPLP-EATKEKEDCLEQHTELEN 60

Query: 61 EKYFLKDIEPRPSATFYPDHDSK 83
          EK F+KDIEPRPS +FYP++  K
Sbjct: 61 EKSFVKDIEPRPSISFYPNNAKK 82

[Close]

BLAST of Cla97C02G032060 vs. NCBI nr
Match: KGN44340.1 (hypothetical protein Csa_7G262890 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLEDKKLRNE 60
          MKI+PTF ITL LLLL  N IESRYEPGGQW+ VI D+ LPV V++E EDC + K L+NE
Sbjct: 1  MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPV-VSQEKEDCFKYKSLKNE 60

Query: 61 KYFLKDIEPRPSATFYPDHDSK 83
            F  D +PRPS TFYP+ +SK
Sbjct: 61 NTFFNDTKPRPSITFYPNDESK 81

[Close]

BLAST of Cla97C02G032060 vs. NCBI nr
Match: XP_011659073.1 (PREDICTED: proteoglycan 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLEDKKLRNE 60
          MKI+PTF ITL LLLL  N IESRYEPGGQW+ VI D+ LPV V++E EDC + K L+NE
Sbjct: 1  MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPV-VSQEKEDCFKYKSLKNE 60

Query: 61 KYFLKDIEPRPSATFYPDHDSK 83
            F  D +PRPS TFYP+ +SK
Sbjct: 61 NTFFNDTKPRPSITFYPNDESK 81

[Close]

BLAST of Cla97C02G032060 vs. NCBI nr
Match: XP_011659075.1 (PREDICTED: proteoglycan 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLEDKKLRNE 60
          MKI+PTF ITL LLLL  N IESRYEPGGQW+ VI D+ LPV V++E EDC + K L+NE
Sbjct: 1  MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPV-VSQEKEDCFKYKSLKNE 60

Query: 61 KYFLKDIEPRPSATFYPDHDSK 83
            F  D +PRPS TFYP+ +SK
Sbjct: 61 NTFFNDTKPRPSITFYPNDESK 81

[Close]

BLAST of Cla97C02G032060 vs. TrEMBL
Match: tr|A0A0A0K958|A0A0A0K958_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G262900 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-21
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLEDKKLRNE 60
          MKIKPTF ITLFLLLL  N IESRYEPGGQW+ VI D+ LPV V++E EDC + K L+NE
Sbjct: 1  MKIKPTFGITLFLLLLFFNGIESRYEPGGQWKNVIEDDSLPV-VSQEKEDCFKYKSLKNE 60

Query: 61 KYFLKDIEPRPSATFYPDHDSK 83
            F  DI+PRPS TFYP+  SK
Sbjct: 61 NTFFNDIKPRPSITFYPNDGSK 81

[Close]

BLAST of Cla97C02G032060 vs. TrEMBL
Match: tr|A0A0A0K3R4|A0A0A0K3R4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G262890 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.2e-20
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MKIKPTFEITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEVTKENEDCLEDKKLRNE 60
          MKI+PTF ITL LLLL  N IESRYEPGGQW+ VI D+ LPV V++E EDC + K L+NE
Sbjct: 1  MKIQPTFGITLILLLLFFNGIESRYEPGGQWKNVIEDDSLPV-VSQEKEDCFKYKSLKNE 60

Query: 61 KYFLKDIEPRPSATFYPDHDSK 83
            F  D +PRPS TFYP+ +SK
Sbjct: 61 NTFFNDTKPRPSITFYPNDESK 81

[Close]

BLAST of Cla97C02G032060 vs. TrEMBL
Match: tr|A0A2N9IJW5|A0A2N9IJW5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52456 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 9  ITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEV------------TKENEDCLED-- 68
          + LF LLL  N+IESR +PG  W  V+ D+P+P  +              +N +C     
Sbjct: 8  LCLFSLLLFANTIESRKDPGEYWTSVMKDQPMPEAIHGLVQLDSSPSKLSKNANCHTSEG 67

Query: 69 -KKLRNEKYFLKDIEPRPSATFY 77
           +K ++EK F KD EPRPSAT Y
Sbjct: 68 ARKHKSEKPFDKDFEPRPSATAY 90

[Close]

BLAST of Cla97C02G032060 vs. TrEMBL
Match: tr|A0A2P4KUJ1|A0A2P4KUJ1_QUESU (Organ-specific protein s2 OS=Quercus suber OX=58331 GN=CFP56_54016 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 32/84 (38.10%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 9  ITLFLLLLLVNSIESRYEPGGQWRYVIADEPLPVEV------------TKENEDCLED-- 68
          +TLF LLL  N+IESR +PG  W  V+ D+P+P  +              +N++C     
Sbjct: 12 LTLFSLLLFANTIESRKDPGEYWTIVMKDQPMPEAIQGLVHLDSSPSKLSKNDNCHTSGG 71

Query: 69 --KKLRNEKYFLKDIEPRPSATFY 77
             K + EK ++KD EPRPS T Y
Sbjct: 72 AIGKDQGEKPYVKDFEPRPSVTAY 95

The following BLAST results are available for this feature:

BLAST of Cla97C02G032060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44341.1	4.4e-21	67.07	hypothetical protein Csa_7G262900 [Cucumis sativus]	[more]
XP_022135727.1	2.9e-20	67.47	uncharacterized protein LOC111007618 [Momordica charantia]	[more]
KGN44340.1	1.1e-19	63.41	hypothetical protein Csa_7G262890 [Cucumis sativus]	[more]
XP_011659073.1	1.1e-19	63.41	PREDICTED: proteoglycan 4-like isoform X1 [Cucumis sativus]	[more]
XP_011659075.1	1.1e-19	63.41	PREDICTED: proteoglycan 4-like isoform X2 [Cucumis sativus]	[more]

BLAST of Cla97C02G032060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K958\|A0A0A0K958_CUCSA	2.9e-21	67.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G262900 PE=4 SV=1	[more]
tr\|A0A0A0K3R4\|A0A0A0K3R4_CUCSA	7.2e-20	63.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G262890 PE=4 SV=1	[more]
tr\|A0A2N9IJW5\|A0A2N9IJW5_FAGSY	1.1e-04	39.76	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52456 PE=4 SV=1	[more]
tr\|A0A2P4KUJ1\|A0A2P4KUJ1_QUESU	1.1e-04	38.10	Organ-specific protein s2 OS=Quercus suber OX=58331 GN=CFP56_54016 PE=4 SV=1	[more]

BLAST of Cla97C02G032060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G032060 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024489	Organ_specific_prot

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G032060.1	Cla97C02G032060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	Organ_specific	coord: 129..189 e-value: 3.1E-9 score: 37.5 coord: 152..211 e-value: 3.1E-9 score: 37.4 coord: 196..256 e-value: 3.1E-9 score: 37.5 coord: 219..278 e-value: 2.7E-9 score: 37.6 coord: 26..122 e-value: 5.5E-14 score: 52.8
IPR024489	Organ specific protein	PRODOM	PD010796		coord: 18..122 e-value: 8.0E-7 score: 128.0
None	No IPR available	PANTHER	PTHR33731	FAMILY NOT NAMED	coord: 199..285
None	No IPR available	PANTHER	PTHR33731:SF1	SUBFAMILY NOT NAMED	coord: 9..189
None	No IPR available	PANTHER	PTHR33731:SF1	SUBFAMILY NOT NAMED	coord: 199..285 coord: 109..233
None	No IPR available	PANTHER	PTHR33731	FAMILY NOT NAMED	coord: 9..189
None	No IPR available	PANTHER	PTHR33731	FAMILY NOT NAMED	coord: 109..233

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G032060	Cla015936	Watermelon (97103) v1	wmwmbB317
Cla97C02G032060	Csa7G259390	Cucumber (Chinese Long) v2	cuwmbB531
Cla97C02G032060	MELO3C012540	Melon (DHL92) v3.5.1	mewmbB179
Cla97C02G032060	ClCG02G005110	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G032060	CSPI07G11510	Wild cucumber (PI 183967)	cpiwmbB555
Cla97C02G032060	Cucsa.240450	Cucumber (Gy14) v1	cgywmbB428
Cla97C02G032060	CmaCh19G006570	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G032060	CmaCh11G011050	Cucurbita maxima (Rimu)	cmawmbB102
Cla97C02G032060	CmoCh11G011330	Cucurbita moschata (Rifu)	cmowmbB089
Cla97C02G032060	CmoCh19G006680	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G032060	Lsi11G010890	Bottle gourd (USVL1VR-Ls)	lsiwmbB086
Cla97C02G032060	CsGy7G010770	Cucumber (Gy14) v2	cgybwmbB504
Cla97C02G032060	MELO3C012540.2	Melon (DHL92) v3.6.1	medwmbB165
Cla97C02G032060	CsaV3_7G023460	Cucumber (Chinese Long) v3	cucwmbB551
Cla97C02G032060	Bhi05G001081	Wax gourd	wgowmbB250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G032060	Cucumber (Chinese Long) v3	cucwmbB126
Cla97C02G032060	Cucumber (Chinese Long) v2	cuwmbB123
Cla97C02G032060	Bottle gourd (USVL1VR-Ls)	lsiwmbB056
Cla97C02G032060	Watermelon (Charleston Gray)	wcgwmbB068
Cla97C02G032060	Watermelon (97103) v1	wmwmbB367
Cla97C02G032060	Wax gourd	wgowmbB356
Cla97C02G032060	Watermelon (97103) v2	wmbwmbB065
Cla97C02G032060	Silver-seed gourd	carwmbB0930
Cla97C02G032060	Cucumber (Gy14) v2	cgybwmbB117
Cla97C02G032060	Cucumber (Gy14) v1	cgywmbB151
Cla97C02G032060	Cucurbita maxima (Rimu)	cmawmbB570
Cla97C02G032060	Cucurbita maxima (Rimu)	cmawmbB619
Cla97C02G032060	Cucurbita moschata (Rifu)	cmowmbB550
Cla97C02G032060	Cucurbita moschata (Rifu)	cmowmbB592
Cla97C02G032060	Wild cucumber (PI 183967)	cpiwmbB124