CsaV3_7G021820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G021820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description60S ribosomal protein L27
Locationchr7 : 10530045 .. 10531737 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTATAAATCGTTGATGCCGAAAAATGGATCAACTGTAAAATTATTTTACAGAGGAGATTCGTCGGAATGTCTGTGAGACCAAAGAGAGTAAGCATGAGTGTGGTGTCTAACTAGACACACTCCAACCCTCAAGTCAGTCTAGTGTTTCGAAGTAGTCAATAGTAAAGAAAATAGTAAGTATTCAGGCGTATTTGGACGTCAAACATACGTTCAACCAATGACCTTGGTCATGTAATATAACATGTTGATGTAACCAACGGTTGAGTCATAATTGCGTCTCTTGAACTTCCCGGATCGTTGAGCGACCCGTTTAATCTAAAATCTCATAACAATATTTCTATAATTCAACTACCTTATCCATGCAAATGTTAAGTTTGACAGACACGCCCATAGTATATAGATGGACCGAGCCCAATTAGACACAAATAAGAACAAGCCCACTAACAATTTGAGGCCCAGGTCCAAATACAATTATTAGGGTTTCAGTCGAACTAAACCAATTACAAGTCAGCTGCTCCGCCATCTTGTTCTAGGTTTTACGATTTCATCGTCTCAACAGAACTAAACGGAGCATTTTTCGTAATCAAAGCTCCAATCGAGTTAAGAAATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGAGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCAAAGGAGATCAAAAAGAGATTGGAGAACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGAGGGAATCATTTCAGGTGTTAGAGGTTTGTTTTTTCTTGATTCAAATTTGGAGAAACGATTTTGATTATGATGATGAATGAATTTGTTGATTTTCTTTTTAGCTCTAAATGGGGAGAAGGAGGAAGAATGTAATCCAATGATTTTGAGTCGCTCAATCTCATTTAATTTTCTCATATTTGGATACAGATTCAATACCGATTGTTGATGAAAAAAACAAGAATTTTAGAGGATCAAATGGTATTTATTAGTAGCGATCACATATAGTAGTAGTAGTACATCTAGGGAGATTCTTTCACATTGTTCTTTCACGGGTTTGATTCAATCAGTCTCAATTTTTGTTATTTGTTTTTATATGAAAAGTGGATCCCTTTTGTTATTTCTGTTGTTCTTTACCTATTTTTGTAATCGTAATGAAGTTTCCTTCCAAATCTATGATTTAAATGACAATACTATGAAAATTAAACAAAAAAATCACCTTGATGTTCATCTAAACAAAATTTTGACATAATCCACTTGATTACTTTGGAGGTAGGATTTCTTGATTCTTAGTGGCCCTTGGTAGGAAGGGTTTGGTTATAGAAGGTTACGATAATATGTGTGGGTAGGAAGTGTTATGTGAGTAGTCTGATAATAGCATTCTTGGGGGAAAAGTTATTTGCTAGTCTTGTGAAAGTT

mRNA sequence

ATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGAGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCAAAGGAGATCAAAAAGAGATTGGAGAACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGAGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCAAAGGAGATCAAAAAGAGATTGGAGAACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Protein sequence

MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENRFKTGKNRWFFTKLRF
Homology
[Close]
BLAST of CsaV3_7G021820 vs. NCBI nr
Match: XP_011658974.1 (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] >KGN44160.1 hypothetical protein Csa_7G209560 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 6.3e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT+KKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. NCBI nr
Match: XP_004145994.2 (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus] >KGN54977.1 60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 4.5e-66
Identity = 128/135 (94.81%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT+KKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. NCBI nr
Match: XP_008464678.1 (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-65
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. NCBI nr
Match: XP_022940098.1 (60S ribosomal protein L27-3-like [Cucurbita moschata])

HSP 1 Score: 253.4 bits (646), Expect = 4.2e-64
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. NCBI nr
Match: XP_022981139.1 (60S ribosomal protein L27-like [Cucurbita maxima])

HSP 1 Score: 248.1 bits (632), Expect = 1.8e-62
Identity = 124/135 (91.85%), Postives = 130/135 (96.30%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVN DCLQS+ SKV+A+KEIKKRLE+R
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKGSKVAAAKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TAIR10
Match: AT4G15000.1 (Ribosomal L27e protein family)

HSP 1 Score: 217.6 bits (553), Expect = 4.7e-57
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D LQS+  KV+A KE K +LE R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TAIR10
Match: AT3G22230.1 (Ribosomal L27e protein family)

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-55
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D L+S+  KV+A KE K +LE R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TAIR10
Match: AT2G32220.1 (Ribosomal L27e protein family)

HSP 1 Score: 199.9 bits (507), Expect = 1.0e-51
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGRY G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVK F K+ NYQH+MPTRYTLD+DLK+VV+ D + S+  KV+A KE K + E R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. Swiss-Prot
Match: sp|Q05462|RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.4e-56
Identity = 107/135 (79.26%), Postives = 121/135 (89.63%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVI+LQGRYAG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVKAF+KL NYQH+MPTRYTLDVDLKD V  D LQS+  KV+A KE KK LE R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. Swiss-Prot
Match: sp|P51419|RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 217.6 bits (553), Expect = 8.4e-56
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D LQS+  KV+A KE K +LE R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. Swiss-Prot
Match: sp|Q8LCL3|RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVK FIKL NYQH+MPTRYTLDVDLK+V  +D L+S+  KV+A KE K +LE R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. Swiss-Prot
Match: sp|P41101|RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 107/139 (76.98%), Postives = 115/139 (82.73%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           M KF+KPNKAVI+LQG+YAGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KVIRKDS K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDL----KDVVNVDCLQSRVSKVSASKEIKKR 120
           K  KKSRVKAFIKL NY HIMPTRYTLD DL    KDVVN D LQ+R  KV+A +  K R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 120

Query: 121 LENRFKTGKNRWFFTKLRF 136
           L  RFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]
BLAST of CsaV3_7G021820 vs. Swiss-Prot
Match: sp|Q9SKX8|RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.8e-50
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGRY G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVK F K+ NYQH+MPTRYTLD+DLK+VV+ D + S+  KV+A KE K + E R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TrEMBL
Match: tr|A0A0A0K3A4|A0A0A0K3A4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.2e-68
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT+KKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TrEMBL
Match: tr|A0A0A0L310|A0A0A0L310_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-66
Identity = 128/135 (94.81%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT+KKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TrEMBL
Match: tr|A0A1S3CNL3|A0A1S3CNL3_CUCME (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TrEMBL
Match: tr|A0A2N9FTH9|A0A2N9FTH9_FAGSY (60S ribosomal protein L27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21879 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.8e-58
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVI+LQGRYAGRKAVIVR FDEGTRDRPYGHCLVAG+ KYPSKVIRKDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGRKAVIVRAFDEGTRDRPYGHCLVAGISKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVKAF+KL N+QH+MPTRYTLDVDLKD V+VDCLQS+  KV+A+KE KKRLE+R
Sbjct: 61  KTAKKSRVKAFVKLVNFQHLMPTRYTLDVDLKDAVSVDCLQSKDKKVTAAKETKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CsaV3_7G021820 vs. TrEMBL
Match: tr|A0A2P4L2S6|A0A2P4L2S6_QUESU (60S ribosomal protein L27 OS=Quercus suber OX=58331 GN=CFP56_62579 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.1e-58
Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVI+LQGRYAGRKAVIVR+FDEGTRDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGRKAVIVRSFDEGTRDRPYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120
           KT KKSRVKAFIKL N+QH+MPTRYTLDVDLKDVV VD LQS+  KV+A+KE KK+LE R
Sbjct: 61  KTAKKSRVKAFIKLVNFQHLMPTRYTLDVDLKDVVAVDSLQSKDKKVTAAKETKKKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:
BLAST of CsaV3_7G021820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658974.16.3e-6898.52PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] >KGN44160.1 hypothet... [more]
XP_004145994.24.5e-6694.81PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus] >KGN54977.1 60S ri... [more]
XP_008464678.11.7e-6595.56PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo][more]
XP_022940098.14.2e-6494.0760S ribosomal protein L27-3-like [Cucurbita moschata][more]
XP_022981139.11.8e-6291.8560S ribosomal protein L27-like [Cucurbita maxima][more]
BLAST of CsaV3_7G021820 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15000.14.7e-5778.52Ribosomal L27e protein family[more]
AT3G22230.12.0e-5577.04Ribosomal L27e protein family[more]
AT2G32220.11.0e-5171.85Ribosomal L27e protein family[more]
BLAST of CsaV3_7G021820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q05462|RL27_PEA6.4e-5679.2660S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1[more]
sp|P51419|RL273_ARATH8.4e-5678.5260S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2[more]
sp|Q8LCL3|RL272_ARATH3.5e-5477.0460S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2[more]
sp|P41101|RL27_SOLTU1.6e-5176.9860S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1[more]
sp|Q9SKX8|RL271_ARATH1.8e-5071.8560S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1[more]
BLAST of CsaV3_7G021820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3A4|A0A0A0K3A4_CUCSA4.2e-6898.5260S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1[more]
tr|A0A0A0L310|A0A0A0L310_CUCSA3.0e-6694.8160S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1[more]
tr|A0A1S3CNL3|A0A1S3CNL3_CUCME1.1e-6595.5660S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1[more]
tr|A0A2N9FTH9|A0A2N9FTH9_FAGSY1.8e-5885.1960S ribosomal protein L27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21879 PE=3 SV=... [more]
tr|A0A2P4L2S6|A0A2P4L2S6_QUESU5.1e-5885.9360S ribosomal protein L27 OS=Quercus suber OX=58331 GN=CFP56_62579 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR018262Ribosomal_L27e_CS
IPR038655L27e_sf
IPR001141Ribosomal_L27e
IPR005824KOW
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G021820.1CsaV3_7G021820.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 4..31
e-value: 0.0049
score: 26.1
IPR001141Ribosomal protein L27ePFAMPF01777Ribosomal_L27ecoord: 52..135
e-value: 2.8E-30
score: 104.4
IPR001141Ribosomal protein L27ePANTHERPTHR1049760S RIBOSOMAL PROTEIN L27coord: 1..135
IPR001141Ribosomal protein L27ePRODOMPD009396coord: 70..135
e-value: 2.0E-16
score: 205.0
IPR038655Ribosomal protein L27e superfamilyGENE3DG3DSA:2.30.30.770coord: 1..135
e-value: 1.3E-56
score: 192.4
NoneNo IPR availablePANTHERPTHR10497:SF460S RIBOSOMAL PROTEIN L27-1-RELATEDcoord: 1..135
NoneNo IPR availableCDDcd06090KOW_RPL27coord: 6..88
e-value: 2.19009E-36
score: 120.751
IPR018262Ribosomal protein L27e, conserved sitePROSITEPS01107RIBOSOMAL_L27Ecoord: 124..135
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 2..135

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G021820CSPI07G09770Wild cucumber (PI 183967)cpicucB414
CsaV3_7G021820Cucsa.007220Cucumber (Gy14) v1cgycucB132
CsaV3_7G021820CsGy7G009280Cucumber (Gy14) v2cgybcucB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G021820Silver-seed gourdcarcucB0944
CsaV3_7G021820Cucurbita maxima (Rimu)cmacucB0049
CsaV3_7G021820Cucurbita maxima (Rimu)cmacucB0597
CsaV3_7G021820Cucurbita moschata (Rifu)cmocucB0035
CsaV3_7G021820Cucurbita moschata (Rifu)cmocucB0584
CsaV3_7G021820Cucurbita pepo (Zucchini)cpecucB0727
CsaV3_7G021820Cucurbita pepo (Zucchini)cpecucB0988
CsaV3_7G021820Bottle gourd (USVL1VR-Ls)cuclsiB544
CsaV3_7G021820Melon (DHL92) v3.5.1cucmeB552
CsaV3_7G021820Melon (DHL92) v3.6.1cucmedB540
CsaV3_7G021820Watermelon (Charleston Gray)cucwcgB539
CsaV3_7G021820Watermelon (97103) v1cucwmB581
CsaV3_7G021820Watermelon (97103) v2cucwmbB585
CsaV3_7G021820Wax gourdcucwgoB717