CSPI07G09770 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G09770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description60S ribosomal protein L27
LocationChr7 : 7751279 .. 7752440 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTCTCTTGAACTTCCCGGATCGTTGAGCGACCCGTTTAATCTAAAATCTCATAACAATATTTCTATAATTCAACTACCTTATCCATGCAAATGTTAAGTTTCACAGACACGCCCATAGTATATAGATGGACCAAGCCCAATTAGACACAAATAAGAACAAGCCCACTAACAATTTGAGGCCCAGGTCCAAATACAATTATTAGGGTTTCAGTCGAACTAAACCAATTACAAGTCAGCTGCTCCGCCATCTTGTTCTAGGTTTTACGATTTCATCGTCTCAACAGAACCAAACGGAGCATTTTTCGTAATCAAAGCTCCAATCGAGTTAAGAAATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCAAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGAGGGAATCATTTCAGGTGTTAGAGGTTTGTTTTTTCTTGATTCAAATTTGGAGAAACGATTTTGATTATGATGATGAATGAATTTGTTGATTTTATTTTTAGCTCTAAATGGGGAGAAGGAGGAAGAATGTAATCCAATGATTTTGAGTCGCTCAATCTCATTTAAATTTCTCATATTTGGATACAGATTCAATACCGATTGTTGATGAAAAAAACAAGAATTTTAGAGGATCAAATGGTACCTATTATTAGCGATCACATATAGTAGTAGTACATCTAGGGAGATTCTTTCACATTGTTCTTTCACGGGTTTGATTCAATCAGTCTCAATTTTTGTTATTTGTTTTTATATGAAAAGTGGATCCCTTTTGTTATTTCTGTTGTTCTTTACCTATTTTTGTAATCGTAATGAAGTTTCCTT

mRNA sequence

ATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCAAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAATTCATCAAGCCCAACAAAGCTGTTATCGTTCTTCAAGGCCGATATGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTGATTCGCAAAGATTCAAAGAAAAAGACAGAAAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAGAGTGTCGAAGGTATCGGCGTCAAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA
Homology
[Close]
BLAST of CSPI07G09770 vs. Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.4e-57
Identity = 108/135 (80.00%), Postives = 123/135 (91.11%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVI+LQGRYAG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQH+MPTRYTLDVDLKD V  D LQS+  KV+A KE KK LE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 5.7e-57
Identity = 107/135 (79.26%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQS+  KV+A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-55
Identity = 105/135 (77.78%), Postives = 121/135 (89.63%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+S+  KV+A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-52
Identity = 108/139 (77.70%), Postives = 117/139 (84.17%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           M KF+KPNKAVI+LQG+YAGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KVIRKDS K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVNVDCLQSRVSKVSASKEIKKR 120
           K  KKSRVKAFIKLVNY HIMPTRYTLD DL    KDVVN D LQ+R  KV+A +  K R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 120

Query: 121 LEDRFKTGKNRWFFTKLRF 136
           L +RFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]
BLAST of CSPI07G09770 vs. Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51
Identity = 97/135 (71.85%), Postives = 117/135 (86.67%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGRY G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + S+  KV+A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TrEMBL
Match: A0A0A0K3A4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_7G209560 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.3e-67
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TrEMBL
Match: A0A0A0L310_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G618420 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-66
Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TrEMBL
Match: W9SC93_9ROSA (60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-58
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVIVLQGRYAGRKAVI+R FDEGTRDR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVILRTFDEGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQH+MPTRYTLDVDLKDVV  D LQS+  KV+A KE KKRLE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTTDALQSKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TrEMBL
Match: A0A067JR88_JATCU (60S ribosomal protein L27 OS=Jatropha curcas GN=JCGZ_02471 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-58
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVIVLQGRYAGRKAVI+++FDEGTRDRPYGHCLVAG+KKYPSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIKSFDEGTRDRPYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLKDVV VD LQS+  KV+A+KE K R E+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDSLQSKEKKVAAAKETKARFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TrEMBL
Match: A0A0D2VUU3_GOSRA (60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_012G033800 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.1e-58
Identity = 113/135 (83.70%), Postives = 125/135 (92.59%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAV+VLQGRYAGRKAVIV++FDEGTRDRPYGHCLVAG+KKYPSKV+RKDS K
Sbjct: 1   MVKFLKPNKAVVVLQGRYAGRKAVIVKSFDEGTRDRPYGHCLVAGIKKYPSKVVRKDSSK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK F+KLVNYQH+MPTRYTLDVDLKDVV VD LQS+  KVSA K  K++LE+R
Sbjct: 61  KTAKKSRVKCFLKLVNYQHVMPTRYTLDVDLKDVVTVDSLQSKDKKVSACKATKQKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TAIR10
Match: AT4G15000.1 (AT4G15000.1 Ribosomal L27e protein family)

HSP 1 Score: 221.5 bits (563), Expect = 3.2e-58
Identity = 107/135 (79.26%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQS+  KV+A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TAIR10
Match: AT3G22230.1 (AT3G22230.1 Ribosomal L27e protein family)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-56
Identity = 105/135 (77.78%), Postives = 121/135 (89.63%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGRYAG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+S+  KV+A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. TAIR10
Match: AT2G32220.1 (AT2G32220.1 Ribosomal L27e protein family)

HSP 1 Score: 203.8 bits (517), Expect = 7.0e-53
Identity = 97/135 (71.85%), Postives = 117/135 (86.67%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGRY G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + S+  KV+A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. NCBI nr
Match: gi|659129420|ref|XP_008464678.1| (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 2.7e-67
Identity = 131/135 (97.04%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT+KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. NCBI nr
Match: gi|778725645|ref|XP_011658974.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 4.7e-67
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. NCBI nr
Match: gi|778695465|ref|XP_004145994.2| (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.3e-66
Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. NCBI nr
Match: gi|658043732|ref|XP_008357506.1| (PREDICTED: 60S ribosomal protein L27-like [Malus domestica])

HSP 1 Score: 238.4 bits (607), Expect = 7.2e-60
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVI LQGRYAGRKAVIVR FDEGTRDRPYGHCLVAG+KKYP+KVIRKDS K
Sbjct: 1   MVKFLKPNKAVINLQGRYAGRKAVIVRAFDEGTRDRPYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQH+MPTRYTLDVDLKDVVNV+CLQ++  KV+A KE+KKR E+R
Sbjct: 61  KTAKKSRVKAFIKLVNYQHLMPTRYTLDVDLKDVVNVECLQTKDKKVTALKEVKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]
BLAST of CSPI07G09770 vs. NCBI nr
Match: gi|702320778|ref|XP_010052670.1| (PREDICTED: 60S ribosomal protein L27-like [Eucalyptus grandis])

HSP 1 Score: 238.0 bits (606), Expect = 9.4e-60
Identity = 115/135 (85.19%), Postives = 127/135 (94.07%), Query Frame = 1 

Query: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KP KAVIVLQGRYAGRKAVI+RNFD+GTRDRPYGHCLVAG+KKYPSKVI+KDS K
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIIRNFDDGTRDRPYGHCLVAGIKKYPSKVIKKDSTK 60

Query: 61  KTEKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLEDR 120
           KT KKSRVK F+KLVNY+H+MPTRYTLDVDLKDVVN DCLQS+  KV+A+KE KKRLE+R
Sbjct: 61  KTGKKSRVKTFVKLVNYRHLMPTRYTLDVDLKDVVNPDCLQSKDKKVTAAKETKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:
BLAST of CSPI07G09770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL27_PEA4.4e-5780.0060S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1[more]
RL273_ARATH5.7e-5779.2660S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2[more]
RL272_ARATH2.4e-5577.7860S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2[more]
RL27_SOLTU1.1e-5277.7060S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1[more]
RL271_ARATH1.2e-5171.8560S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1[more]
BLAST of CSPI07G09770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3A4_CUCSA3.3e-6797.0460S ribosomal protein L27 OS=Cucumis sativus GN=Csa_7G209560 PE=3 SV=1[more]
A0A0A0L310_CUCSA1.6e-6694.8160S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G618420 PE=3 SV=1[more]
W9SC93_9ROSA1.2e-5885.9360S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1[more]
A0A067JR88_JATCU1.6e-5884.4460S ribosomal protein L27 OS=Jatropha curcas GN=JCGZ_02471 PE=3 SV=1[more]
A0A0D2VUU3_GOSRA2.1e-5883.7060S ribosomal protein L27 OS=Gossypium raimondii GN=B456_012G033800 PE=3 SV=1[more]
BLAST of CSPI07G09770 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15000.13.2e-5879.26 Ribosomal L27e protein family[more]
AT3G22230.11.4e-5677.78 Ribosomal L27e protein family[more]
AT2G32220.17.0e-5371.85 Ribosomal L27e protein family[more]
BLAST of CSPI07G09770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129420|ref|XP_008464678.1|2.7e-6797.04PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo][more]
gi|778725645|ref|XP_011658974.1|4.7e-6797.04PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus][more]
gi|778695465|ref|XP_004145994.2|2.3e-6694.81PREDICTED: 60S ribosomal protein L27-3-like [Cucumis sativus][more]
gi|658043732|ref|XP_008357506.1|7.2e-6086.67PREDICTED: 60S ribosomal protein L27-like [Malus domestica][more]
gi|702320778|ref|XP_010052670.1|9.4e-6085.19PREDICTED: 60S ribosomal protein L27-like [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001141Ribosomal_L27e
IPR005824KOW
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
IPR018262Ribosomal_L27e_CS
IPR001141Ribosomal_L27e
IPR005824KOW
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
IPR018262Ribosomal_L27e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G09770.2CSPI07G09770.2mRNA
CSPI07G09770.1CSPI07G09770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001141Ribosomal protein L27ePRODOMPD009396coord: 70..135
score: 2.0
IPR001141Ribosomal protein L27ePANTHERPTHR1049760S RIBOSOMAL PROTEIN L27coord: 2..135
score: 1.3
IPR001141Ribosomal protein L27ePFAMPF01777Ribosomal_L27ecoord: 52..135
score: 7.7
IPR005824KOWSMARTSM00739kow_9coord: 4..31
score: 0.
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 2..135
score: 7.52
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 3..118
score: 4.3
IPR018262Ribosomal protein L27e, conserved sitePROSITEPS01107RIBOSOMAL_L27Ecoord: 124..135
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G09770Csa7G209560Cucumber (Chinese Long) v2cpicuB354
CSPI07G09770CsaV3_7G021820Cucumber (Chinese Long) v3cpicucB414
CSPI07G09770Cucsa.007220Cucumber (Gy14) v1cgycpiB128
CSPI07G09770CsGy7G009280Cucumber (Gy14) v2cgybcpiB331
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G09770Silver-seed gourdcarcpiB0943
CSPI07G09770Watermelon (97103) v2cpiwmbB588
CSPI07G09770Wax gourdcpiwgoB705
CSPI07G09770Cucurbita maxima (Rimu)cmacpiB040
CSPI07G09770Cucurbita maxima (Rimu)cmacpiB503
CSPI07G09770Cucurbita moschata (Rifu)cmocpiB030
CSPI07G09770Cucurbita moschata (Rifu)cmocpiB494
CSPI07G09770Melon (DHL92) v3.5.1cpimeB542
CSPI07G09770Watermelon (Charleston Gray)cpiwcgB545
CSPI07G09770Watermelon (97103) v1cpiwmB573
CSPI07G09770Cucurbita pepo (Zucchini)cpecpiB587
CSPI07G09770Cucurbita pepo (Zucchini)cpecpiB797
CSPI07G09770Bottle gourd (USVL1VR-Ls)cpilsiB524
CSPI07G09770Melon (DHL92) v3.6.1cpimedB527