CsaV3_7G021720 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G021720
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 10398737 .. 10398997 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

mRNA sequence

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

Coding sequence (CDS)

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

Protein sequence

WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVHHEELPLEEGAVESDDEKVLPSVGKKK

Homology

[Close]

BLAST of CsaV3_7G021720 vs. NCBI nr
Match: KGN44145.1 (hypothetical protein Csa_7G206960 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 2.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 60
           WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH
Sbjct: 34  WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 93

Query: 61  HEELPLEEGAVESDDEKVLPSVGKKK 87
           HEELPLEEGAVESDDEKVLPSVGKKK
Sbjct: 94  HEELPLEEGAVESDDEKVLPSVGKKK 119

[Close]

BLAST of CsaV3_7G021720 vs. TrEMBL
Match: tr|A0A0A0K393|A0A0A0K393_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 60
           WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH
Sbjct: 34  WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 93

Query: 61  HEELPLEEGAVESDDEKVLPSVGKKK 87
           HEELPLEEGAVESDDEKVLPSVGKKK
Sbjct: 94  HEELPLEEGAVESDDEKVLPSVGKKK 119

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44145.1	2.9e-42	100.00	hypothetical protein Csa_7G206960 [Cucumis sativus]	[more]

BLAST of CsaV3_7G021720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K393\|A0A0A0K393_CUCSA	1.9e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G021720.1	CsaV3_7G021720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G021720	CSPI07G09630	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G021720	CsGy7G009190	Cucumber (Gy14) v2	cgybcucB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G021720	Bottle gourd (USVL1VR-Ls)	cuclsiB544
CsaV3_7G021720	Melon (DHL92) v3.5.1	cucmeB552
CsaV3_7G021720	Melon (DHL92) v3.6.1	cucmedB540
CsaV3_7G021720	Watermelon (Charleston Gray)	cucwcgB539
CsaV3_7G021720	Watermelon (97103) v1	cucwmB581
CsaV3_7G021720	Watermelon (97103) v2	cucwmbB585
CsaV3_7G021720	Wax gourd	cucwgoB717
CsaV3_7G021720	Cucumber (Gy14) v1	cgycucB354
CsaV3_7G021720	Cucurbita maxima (Rimu)	cmacucB0591
CsaV3_7G021720	Cucurbita moschata (Rifu)	cmocucB0580