CsaV3_7G021720.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G021720.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 10398737 .. 10398997 (-)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

mRNA sequence

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

Coding sequence (CDS)

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

Protein sequence

WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVHHEELPLEEGAVESDDEKVLPSVGKKK

Homology

[Close]

BLAST of CsaV3_7G021720.1 vs. NCBI nr
Match: KGN44145.1 (hypothetical protein Csa_7G206960 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 2.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 60
           WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH
Sbjct: 34  WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 93

Query: 61  HEELPLEEGAVESDDEKVLPSVGKKK 87
           HEELPLEEGAVESDDEKVLPSVGKKK
Sbjct: 94  HEELPLEEGAVESDDEKVLPSVGKKK 119

[Close]

BLAST of CsaV3_7G021720.1 vs. TrEMBL
Match: tr|A0A0A0K393|A0A0A0K393_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 60
           WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH
Sbjct: 34  WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 93

Query: 61  HEELPLEEGAVESDDEKVLPSVGKKK 87
           HEELPLEEGAVESDDEKVLPSVGKKK
Sbjct: 94  HEELPLEEGAVESDDEKVLPSVGKKK 119

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44145.1	2.9e-42	100.00	hypothetical protein Csa_7G206960 [Cucumis sativus]	[more]

BLAST of CsaV3_7G021720.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K393\|A0A0A0K393_CUCSA	1.9e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G021720	CsaV3_7G021720	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021720.1.cds1	CsaV3_7G021720.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021720.1.exon1	CsaV3_7G021720.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021720.1	CsaV3_7G021720.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..86