CsaV3_7G018580 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G018580
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 8506149 .. 8506340 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACTGGATGATGAACAACTGAACTACAAACACGTTAAGCATGGCACCAACAAACTAATTATGGAAATAGACAAATCGAGTGAGGCAGGCGAGATCAAAGTACCAGCCCAATATGCGAGCCAAGTGTTGAAGTTTCTTGATGAGTTGGGAGCAAGAGATAAGAAAAAGAAAGCAGAAGAGGATAAGTAG

mRNA sequence

ATGCGACTGGATGATGAACAACTGAACTACAAACACGTTAAGCATGGCACCAACAAACTAATTATGGAAATAGACAAATCGAGTGAGGCAGGCGAGATCAAAGTACCAGCCCAATATGCGAGCCAAGTGTTGAAGTTTCTTGATGAGTTGGGAGCAAGAGATAAGAAAAAGAAAGCAGAAGAGGATAAGTAG

Coding sequence (CDS)

ATGCGACTGGATGATGAACAACTGAACTACAAACACGTTAAGCATGGCACCAACAAACTAATTATGGAAATAGACAAATCGAGTGAGGCAGGCGAGATCAAAGTACCAGCCCAATATGCGAGCCAAGTGTTGAAGTTTCTTGATGAGTTGGGAGCAAGAGATAAGAAAAAGAAAGCAGAAGAGGATAAGTAG

Protein sequence

MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAEEDK

Homology

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BLAST of CsaV3_7G018580 vs. NCBI nr
Match: KGN59098.1 (hypothetical protein Csa_3G769640 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60
          MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE
Sbjct: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60

Query: 61 EDK 64
          EDK
Sbjct: 61 EDK 63

[Close]

BLAST of CsaV3_7G018580 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-05
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDK 56
          M+LDD+  +YKHVKHGT+K+I+   +SSE G          QVLKFLDELGA D+
Sbjct: 1  MQLDDDYTSYKHVKHGTDKVILGKGESSETG----------QVLKFLDELGAGDR 45

[Close]

BLAST of CsaV3_7G018580 vs. TrEMBL
Match: tr|A0A0A0LBC4|A0A0A0LBC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769640 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60
          MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE
Sbjct: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60

Query: 61 EDK 64
          EDK
Sbjct: 61 EDK 63

[Close]

BLAST of CsaV3_7G018580 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-05
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDK 56
          M+LDD+  +YKHVKHGT+K+I+   +SSE G          QVLKFLDELGA D+
Sbjct: 1  MQLDDDYTSYKHVKHGTDKVILGKGESSETG----------QVLKFLDELGAGDR 45

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59098.1	8.2e-26	100.00	hypothetical protein Csa_3G769640 [Cucumis sativus]	[more]
KGN49573.1	3.6e-05	54.55	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]

BLAST of CsaV3_7G018580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBC4\|A0A0A0LBC4_CUCSA	5.4e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769640 PE=4 SV=1	[more]
tr\|A0A0A0KJ65\|A0A0A0KJ65_CUCSA	2.4e-05	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018580.1	CsaV3_7G018580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G018580	CSPI03G34600	Wild cucumber (PI 183967)	cpicucB196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G018580	Silver-seed gourd	carcucB0924
CsaV3_7G018580	Silver-seed gourd	carcucB0946
CsaV3_7G018580	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G018580	Cucumber (Gy14) v1	cgycucB431
CsaV3_7G018580	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G018580	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G018580	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G018580	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G018580	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G018580	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G018580	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G018580	Melon (DHL92) v3.5.1	cucmeB556
CsaV3_7G018580	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G018580	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G018580	Watermelon (97103) v1	cucwmB594
CsaV3_7G018580	Watermelon (97103) v2	cucwmbB595
CsaV3_7G018580	Wax gourd	cucwgoB734