CsaV3_7G018580.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018580.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 8506149 .. 8506340 (+)
Sequence length192
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACTGGATGATGAACAACTGAACTACAAACACGTTAAGCATGGCACCAACAAACTAATTATGGAAATAGACAAATCGAGTGAGGCAGGCGAGATCAAAGTACCAGCCCAATATGCGAGCCAAGTGTTGAAGTTTCTTGATGAGTTGGGAGCAAGAGATAAGAAAAAGAAAGCAGAAGAGGATAAGTAG

mRNA sequence

ATGCGACTGGATGATGAACAACTGAACTACAAACACGTTAAGCATGGCACCAACAAACTAATTATGGAAATAGACAAATCGAGTGAGGCAGGCGAGATCAAAGTACCAGCCCAATATGCGAGCCAAGTGTTGAAGTTTCTTGATGAGTTGGGAGCAAGAGATAAGAAAAAGAAAGCAGAAGAGGATAAGTAG

Coding sequence (CDS)

ATGCGACTGGATGATGAACAACTGAACTACAAACACGTTAAGCATGGCACCAACAAACTAATTATGGAAATAGACAAATCGAGTGAGGCAGGCGAGATCAAAGTACCAGCCCAATATGCGAGCCAAGTGTTGAAGTTTCTTGATGAGTTGGGAGCAAGAGATAAGAAAAAGAAAGCAGAAGAGGATAAGTAG

Protein sequence

MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAEEDK
Homology
[Close]
BLAST of CsaV3_7G018580.1 vs. NCBI nr
Match: KGN59098.1 (hypothetical protein Csa_3G769640 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60
          MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE
Sbjct: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60

Query: 61 EDK 64
          EDK
Sbjct: 61 EDK 63

[Close]
BLAST of CsaV3_7G018580.1 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-05
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDK 56
          M+LDD+  +YKHVKHGT+K+I+   +SSE G          QVLKFLDELGA D+
Sbjct: 1  MQLDDDYTSYKHVKHGTDKVILGKGESSETG----------QVLKFLDELGAGDR 45

[Close]
BLAST of CsaV3_7G018580.1 vs. TrEMBL
Match: tr|A0A0A0LBC4|A0A0A0LBC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769640 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60
          MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE
Sbjct: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDKKKKAE 60

Query: 61 EDK 64
          EDK
Sbjct: 61 EDK 63

[Close]
BLAST of CsaV3_7G018580.1 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-05
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 1  MRLDDEQLNYKHVKHGTNKLIMEIDKSSEAGEIKVPAQYASQVLKFLDELGARDK 56
          M+LDD+  +YKHVKHGT+K+I+   +SSE G          QVLKFLDELGA D+
Sbjct: 1  MQLDDDYTSYKHVKHGTDKVILGKGESSETG----------QVLKFLDELGAGDR 45

The following BLAST results are available for this feature:
BLAST of CsaV3_7G018580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59098.18.2e-26100.00hypothetical protein Csa_3G769640 [Cucumis sativus][more]
KGN49573.13.6e-0554.55hypothetical protein Csa_5G003650 [Cucumis sativus][more]
BLAST of CsaV3_7G018580.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018580.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018580.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBC4|A0A0A0LBC4_CUCSA5.4e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769640 PE=4 SV=1[more]
tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA2.4e-0554.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G018580CsaV3_7G018580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G018580.1.exon1CsaV3_7G018580.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G018580.1.cds1CsaV3_7G018580.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G018580.1CsaV3_7G018580.1-proteinpolypeptide