CsaV3_7G007340 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTGTTTGATAAGCACAAAGAAAGATGTGCGTTTACTTGAGAAGGCAGGAATCATAGTCAACGATATCGATGGCAGCGATAAAGAAGTTTCAGAATTGTTTAACAATCTCAGTAAATTTGTGCGTAGGTCAAGTGATATTAGTGCGTATTTTGAGAAATATTTCAACTATATCAGCAAAGCTTTGTGTGAGAATAATCGTAATAGACAGTGGAAAAAGTTGAAAGGTCGTTCTTTGAAACATAACTATTTCAATACGCCATGGGCTGGTATCGCTATCTTTGTTGGAACCTTCATTATTATTCTCACTCTCCTTCAAACCATATTCTCTGTTATATCTACATTTCTTAGCTAACTGAGTTAATTTAAGTTGCGTATTTTCCAATAAATATGCAAATTTAATACAAGGCCATGCCATACACACACCTTTGTGGAAGAAAGATAAAAAAATACATCAGGTAACTTAGTTTATAAATTTAAACCAAAGATTGATCAAAATGACAAATTTGACGTTACAATTGCAACTTAATAAAATAATTAAAAAACTGATCTCCATTCGAGGAGGGTCAGATCGGAGTTTACCTCGAAACGTCAACGATGTGAACATTCGTACTTCAGCTGTGTATCATTTACGCGAAATGACAATTATCATATAA ATGGATTGTTTGATAAGCACAAAGAAAGATGTGCGTTTACTTGAGAAGGCAGGAATCATAGTCAACGATATCGATGGCAGCGATAAAGAAGTTTCAGAATTGTTTAACAATCTCAGTAAATTTGTGCGTAGGTCAAGTGATATTAGTGCGTATTTTGAGAAATATTTCAACTATATCAGCAAAGCTTTGTGTGAGAATAATCGTAATAGACAGTGGAAAAAGTTGAAAGGTCGTTCTTTGAAACATAACTATTTCAATACGCCATGGGCTGATCGGAGTTTACCTCGAAACGTCAACGATGTGAACATTCGTACTTCAGCTGTGTATCATTTACGCGAAATGACAATTATCATATAA ATGGATTGTTTGATAAGCACAAAGAAAGATGTGCGTTTACTTGAGAAGGCAGGAATCATAGTCAACGATATCGATGGCAGCGATAAAGAAGTTTCAGAATTGTTTAACAATCTCAGTAAATTTGTGCGTAGGTCAAGTGATATTAGTGCGTATTTTGAGAAATATTTCAACTATATCAGCAAAGCTTTGTGTGAGAATAATCGTAATAGACAGTGGAAAAAGTTGAAAGGTCGTTCTTTGAAACATAACTATTTCAATACGCCATGGGCTGATCGGAGTTTACCTCGAAACGTCAACGATGTGAACATTCGTACTTCAGCTGTGTATCATTTACGCGAAATGACAATTATCATATAA MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYISKALCENNRNRQWKKLKGRSLKHNYFNTPWADRSLPRNVNDVNIRTSAVYHLREMTIII
BLAST of CsaV3_7G007340 vs. NCBI nr
Match: KGN43803.1 (hypothetical protein Csa_7G068560 [Cucumis sativus]) HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_016899969.1 (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]) HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28 Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_011649818.1 (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus] >KGN62937.1 hypothetical protein Csa_2G381630 [Cucumis sativus]) HSP 1 Score: 123.2 bits (308), Expect = 5.8e-25 Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_022961913.1 (UPF0481 protein At3g47200-like [Cucurbita moschata]) HSP 1 Score: 100.5 bits (249), Expect = 4.0e-18 Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_023547064.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 99.8 bits (247), Expect = 6.8e-18 Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TAIR10
Match: AT3G50160.1 (Plant protein of unknown function (DUF247)) HSP 1 Score: 55.5 bits (132), Expect = 2.7e-08 Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TAIR10
Match: AT3G50130.1 (Plant protein of unknown function (DUF247)) HSP 1 Score: 53.9 bits (128), Expect = 7.8e-08 Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TAIR10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247)) HSP 1 Score: 51.2 bits (121), Expect = 5.0e-07 Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TAIR10
Match: AT3G47200.1 (Plant protein of unknown function (DUF247)) HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05 Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. Swiss-Prot
Match: sp|Q9SD53|Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04 Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TrEMBL
Match: tr|A0A0A0K2S5|A0A0A0K2S5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068560 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TrEMBL
Match: tr|A0A1S4DVF8|A0A1S4DVF8_CUCME (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488291 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 9.7e-29 Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TrEMBL
Match: tr|A0A0A0LQ64|A0A0A0LQ64_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381630 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25 Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TrEMBL
Match: tr|A0A1S3BD29|A0A1S3BD29_CUCME (LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488563 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17 Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 0
BLAST of CsaV3_7G007340 vs. TrEMBL
Match: tr|A0A1S3BDS2|A0A1S3BDS2_CUCME (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488564 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16 Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |