CsaV3_7G001960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G001960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description40S ribosomal protein S11-like
Locationchr7 : 1596113 .. 1598386 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGATTGTCGTCTGATCTATAACACTCTGAACCTCAGGTTTAGGGTTTCTGTAATCAAGTCTCCTTCGGCCGCCTGAGCAAACCACAAATCCTCCTCTCTTCACAATCCCTAATCATGGCGGAACAGGTTTCTATTCAATCCGAAATTCCACTTCTTTTCTTTTCTCGTCTATTCTGTCTGTTTCCATTTTATTAACTTTAACTTTCCATCTCCCTACTCTTCCTTCTTTTTCTACAGACCGAGAAGGCCTTTTTGAAGCAACCTAAAGTGTTTCTCTGGTAAACCAATTGAAATTTTATTTTTGTTGTTTATTTGAATTGTTGTTCTGTTTACCGTAATCCTTCTTTAATTTCATGTTTATGATTTTTGTTCTTTTTCGATATCAAAATAGCTCTAAAAAGACTGCAAAAGGGAATAAACCTGGAAAGGGCGGGAACCGTTTCTGGAAGAATATTGGATTAGGATTCAAGACCCCAAGAGATGCCATTGAAGGTTCTGTCCTTCGATTTTTTACAACTCTGATTGTGTTTGTTGGATTGTTAAAATGAAAGTGTTTAGCCCTTTGATTTAGCTTAGTGTTTTGATCATTTTTAACCCGGCATGGAGCTTCATTGTATTATATTTGTATGCTTATTTTTTGTTTATTAATGCCTATAACACAATGAATTGGAGCTGCTTCTTCGTTGATACAATATCCGCAGGAAAGCTTATTTAACCACCATTTGTTCTAATGCTGAGAGTGTACAACTCCGTGATAGAATATATTGGAAAAATATTCTGAGCTGAAGGGATCGTTCTGCTGGGGATTTTAATAGCTTTTGTGTAGAATGAGTATTTTTTCTGCATAGATAGAACGATGGTCCCTATTTGATGGATGGTTGAAGGAATCCGATAAATCAAAGACTTAAGTTGATCAAATGATGCTTGTCTTTGTAGAGTCTCCACCAAATATGTATCATAAGAAGTAATCTTATAATAGCTTTGTGTTCATAAAGAGATTAAGATTGAATACTGGAATTCTAATGCCCCCCATCCACTTTCTAGACTTGGTCTCCTCACTTATCCTATGTACTGTGTTCATTTTTATCAAGGCCCAATATCTAGGCTTACATTGCAATCGTGTTCTTTGAATAAAGATGCAATCCAGCAAAGGGTAATTTCTAAGCAATATGGCATACTCTTTTACCATATGTATTGTATGCATCTTTATCTCCAAATTTCAAGCCCCTATACTTGGGCAATGCCTTGCCGTTGGTTTTTGAGTTGTTGCTGAATGTTAGAAGGCTATTTACTGACTGATTATTTCAATTCTACTGTATTCATGCAGGAACATATATTGATAAGAAATGCCCCTTCGCTGGAACCGTTTCCATCAGGGGACGTATTTTAGCTGGAACATGCCATAGCGCTAAGATGGTCAGGACCATTATTGTAAGGAGGAACTACCTACATTATGTTAAGAAGTATCAGAGGTACTTTCCTGATCCCCCACCTCCCATCCGAGCTGATTTGTTTCTTCGTGGTTCTGATATGCTTTGTTTCTTCTCTTCCCCTTCAGGTATGAGAAAAGGCACTCAAACATTCCTGCCCACATATCTCCTTGCTTTCGTGTGAAGGAAGGTGATCATGTTATTATTGGCCAATGCAGGTACATGATTTGACTGATTCTCTCCAATTCTTATTTTGTTTGTTTCTTTGAAGAAAAATTGTTAACATTTACTGTATGGACTTCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATTTAAATTATGATGTAGGGGTTTCCGCTTTTGATACAAAAAGAAAAGAAGCAAGAAAGAACTTTTGAGAGTTGTAGTAGGGGCCAATATTTGATGTAAGAGGGGTTTTGAAAGACTTAGCAGTCTGGATTTTGATATGAATATGGACTGTTTTATTATGTTCTATTTGCTGTGATTTCTTGTCTAATTTGGGTTTTTGGAAGTACCAACATCTCCTTCATCTCTATTAGGTCATTCTAATACATGTCAGTTTTATATTTATGAGGTTGTCTTTCCATTGCTTGTTTTCAGCATTTCATTTTTTATTCTTTCCACCTTGGAACAACAATTATGTTTGTGACTCACCAAGACCCTTGATTCAGTAAGGTAACCTTAAGAATTAATGTCACACCTCCTCTCTTTCAGTTTGCTTTTGTTTTAAAATTTGATTAAATCAAATAATTATTATTTTGG

mRNA sequence

ATGGCGGAACAGACCGAGAAGGCCTTTTTGAAGCAACCTAAAGTGTTTCTCTGCTCTAAAAAGACTGCAAAAGGGAATAAACCTGGAAAGGGCGGGAACCGTTTCTGGAAGAATATTGGATTAGGATTCAAGACCCCAAGAGATGCCATTGAAGGAACATATATTGATAAGAAATGCCCCTTCGCTGGAACCGTTTCCATCAGGGGACGTATTTTAGCTGGAACATGCCATAGCGCTAAGATGGTCAGGACCATTATTGTAAGGAGGAACTACCTACATTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCAAACATTCCTGCCCACATATCTCCTTGCTTTCGTGTGAAGGAAGGTGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATTTAA

Coding sequence (CDS)

ATGGCGGAACAGACCGAGAAGGCCTTTTTGAAGCAACCTAAAGTGTTTCTCTGCTCTAAAAAGACTGCAAAAGGGAATAAACCTGGAAAGGGCGGGAACCGTTTCTGGAAGAATATTGGATTAGGATTCAAGACCCCAAGAGATGCCATTGAAGGAACATATATTGATAAGAAATGCCCCTTCGCTGGAACCGTTTCCATCAGGGGACGTATTTTAGCTGGAACATGCCATAGCGCTAAGATGGTCAGGACCATTATTGTAAGGAGGAACTACCTACATTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCAAACATTCCTGCCCACATATCTCCTTGCTTTCGTGTGAAGGAAGGTGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCPFAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Homology
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BLAST of CsaV3_7G001960 vs. NCBI nr
Match: XP_004153463.1 (PREDICTED: 40S ribosomal protein S11-like [Cucumis sativus] >KGN43351.1 hypothetical protein Csa_7G025720 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 9.3e-87
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

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BLAST of CsaV3_7G001960 vs. NCBI nr
Match: XP_008447825.1 (PREDICTED: 40S ribosomal protein S11-like [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 3.9e-85
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKTAKG +PGKGGNRFWK+IGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of CsaV3_7G001960 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 1.8e-82
Identity = 150/159 (94.34%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+ KG +PGKGGNRFWK+IGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

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BLAST of CsaV3_7G001960 vs. NCBI nr
Match: XP_023554629.1 (40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 1.2e-81
Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK  KG +PGKGGNRFWK+IGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 159

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BLAST of CsaV3_7G001960 vs. NCBI nr
Match: PON46140.1 (Ribosomal protein [Parasponia andersonii] >PON71303.1 Ribosomal protein [Parasponia andersonii] >PON89846.1 Ribosomal protein [Trema orientalis])

HSP 1 Score: 310.5 bits (794), Expect = 3.4e-81
Identity = 148/159 (93.08%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK++KG +PGKGGNRFWK+IGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

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BLAST of CsaV3_7G001960 vs. TAIR10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 295.8 bits (756), Expect = 1.6e-80
Identity = 141/160 (88.12%), Postives = 151/160 (94.38%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+ KG +PGKGGNRFWKNIGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of CsaV3_7G001960 vs. TAIR10
Match: AT5G23740.1 (ribosomal protein S11-beta)

HSP 1 Score: 295.8 bits (756), Expect = 1.6e-80
Identity = 140/159 (88.05%), Postives = 149/159 (93.71%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK + KG +PGKGGNRFWKNIGLGFKTPR+AI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of CsaV3_7G001960 vs. TAIR10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 294.3 bits (752), Expect = 4.6e-80
Identity = 140/159 (88.05%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+ KG +PGKGGNRFWKNIGLGFKTPR+AIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSSS GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

[Close]
BLAST of CsaV3_7G001960 vs. Swiss-Prot
Match: sp|P25460|RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.4e-80
Identity = 142/156 (91.03%), Postives = 150/156 (96.15%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+ KG KPGKGGNRFWK+IGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAF 157
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS++ GKKAF
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]
BLAST of CsaV3_7G001960 vs. Swiss-Prot
Match: sp|Q9M5M1|RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.5e-80
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKT KG +PGKGGNRFWK+IGLGFKTPR+AI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAF  I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]
BLAST of CsaV3_7G001960 vs. Swiss-Prot
Match: sp|P17093|RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-79
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL +KKT KG +PGKGGNRFWK+IGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F G VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS  KKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]
BLAST of CsaV3_7G001960 vs. Swiss-Prot
Match: sp|P16181|RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-79
Identity = 141/160 (88.12%), Postives = 151/160 (94.38%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+ KG +PGKGGNRFWKNIGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of CsaV3_7G001960 vs. Swiss-Prot
Match: sp|P42733|RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-79
Identity = 140/159 (88.05%), Postives = 149/159 (93.71%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK + KG +PGKGGNRFWKNIGLGFKTPR+AI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of CsaV3_7G001960 vs. TrEMBL
Match: tr|A0A0A0K691|A0A0A0K691_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025720 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 6.2e-87
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of CsaV3_7G001960 vs. TrEMBL
Match: tr|A0A1S3BHR3|A0A1S3BHR3_CUCME (40S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.6e-85
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKTAKG +PGKGGNRFWK+IGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of CsaV3_7G001960 vs. TrEMBL
Match: tr|A0A2P5DDD1|A0A2P5DDD1_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074430 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.3e-81
Identity = 148/159 (93.08%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK++KG +PGKGGNRFWK+IGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of CsaV3_7G001960 vs. TrEMBL
Match: tr|A0A2P5EWD1|A0A2P5EWD1_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_143690 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.3e-81
Identity = 148/159 (93.08%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK++KG +PGKGGNRFWK+IGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of CsaV3_7G001960 vs. TrEMBL
Match: tr|A0A1S3BCY7|A0A1S3BCY7_CUCME (40S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.0e-81
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+ KG +PGKGGNRFWK+IGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

The following BLAST results are available for this feature:
BLAST of CsaV3_7G001960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004153463.19.3e-87100.00PREDICTED: 40S ribosomal protein S11-like [Cucumis sativus] >KGN43351.1 hypothet... [more]
XP_008447825.13.9e-8598.11PREDICTED: 40S ribosomal protein S11-like [Cucumis melo][more]
XP_022952178.11.8e-8294.3440S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma... [more]
XP_023554629.11.2e-8193.7140S ribosomal protein S11-like [Cucurbita pepo subsp. pepo][more]
PON46140.13.4e-8193.08Ribosomal protein [Parasponia andersonii] >PON71303.1 Ribosomal protein [Paraspo... [more]
BLAST of CsaV3_7G001960 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48930.11.6e-8088.13Nucleic acid-binding, OB-fold-like protein[more]
AT5G23740.11.6e-8088.05ribosomal protein S11-beta[more]
AT4G30800.14.6e-8088.05Nucleic acid-binding, OB-fold-like protein[more]
BLAST of CsaV3_7G001960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P25460|RS11_MAIZE4.4e-8091.0340S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1[more]
sp|Q9M5M1|RS11_EUPES7.5e-8089.3140S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1[more]
sp|P17093|RS11_SOYBN2.2e-7989.3140S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2[more]
sp|P16181|RS111_ARATH2.9e-7988.1340S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1[more]
sp|P42733|RS113_ARATH2.9e-7988.0540S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2[more]
BLAST of CsaV3_7G001960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K691|A0A0A0K691_CUCSA6.2e-87100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025720 PE=3 SV=1[more]
tr|A0A1S3BHR3|A0A1S3BHR3_CUCME2.6e-8598.1140S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1[more]
tr|A0A2P5DDD1|A0A2P5DDD1_PARAD2.3e-8193.08Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074430 PE=3 SV=... [more]
tr|A0A2P5EWD1|A0A2P5EWD1_9ROSA2.3e-8193.08Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_143690 PE=3 SV=1[more]
tr|A0A1S3BCY7|A0A1S3BCY7_CUCME3.0e-8193.7140S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR019979Ribosomal_S17_CS
IPR032440Ribosomal_S11_N
IPR028333Ribosomal_S17_arc-typ
IPR000266Ribosomal_S17/S11
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0001510 RNA methylation
cellular_component GO:0005840 ribosome
cellular_component GO:0016020 membrane
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G001960.1CsaV3_7G001960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 156..159
NoneNo IPR availableGENE3DG3DSA:2.40.50.1000coord: 1..159
e-value: 1.9E-80
score: 270.0
NoneNo IPR availablePANTHERPTHR10744:SF1740S RIBOSOMAL PROTEIN S11-1-RELATEDcoord: 1..159
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 131..138
score: 73.25
coord: 121..131
score: 60.91
coord: 88..111
score: 37.33
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 74..142
e-value: 1.8E-25
score: 88.7
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..159
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 70..140
e-value: 2.0E-34
score: 362.0
IPR028333Ribosomal protein S17, archaeal/eukaryoticTIGRFAMTIGR03630TIGR03630coord: 55..143
e-value: 7.5E-34
score: 113.8
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 4..72
e-value: 1.0E-31
score: 109.0
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 121..133
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 68..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G001960CSPI07G01860Wild cucumber (PI 183967)cpicucB415
CsaV3_7G001960Cucsa.099770Cucumber (Gy14) v1cgycucB116
CsaV3_7G001960CmaCh19G008020Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G001960CmoCh19G008240Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G001960CsGy7G001820Cucumber (Gy14) v2cgybcucB348
CsaV3_7G001960Carg04101Silver-seed gourdcarcucB0232
CsaV3_7G001960Cla015738Watermelon (97103) v1cucwmB634
CsaV3_7G001960MELO3C013245Melon (DHL92) v3.5.1cucmeB549
CsaV3_7G001960ClCG02G003370Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G001960Lsi11G012930Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G001960MELO3C013245.2Melon (DHL92) v3.6.1cucmedB537
CsaV3_7G001960Cla97C02G029920Watermelon (97103) v2cucwmbB549
CsaV3_7G001960Bhi05G001351Wax gourdcucwgoB695
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G001960Cucumber (Chinese Long) v3cuccucB187
CsaV3_7G001960Cucumber (Chinese Long) v3cuccucB214
CsaV3_7G001960Silver-seed gourdcarcucB0386
CsaV3_7G001960Silver-seed gourdcarcucB1114
CsaV3_7G001960Cucumber (Gy14) v2cgybcucB196
CsaV3_7G001960Cucumber (Gy14) v2cgybcucB306
CsaV3_7G001960Cucumber (Gy14) v1cgycucB160
CsaV3_7G001960Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G001960Cucurbita maxima (Rimu)cmacucB0687
CsaV3_7G001960Cucurbita maxima (Rimu)cmacucB0766
CsaV3_7G001960Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G001960Cucurbita moschata (Rifu)cmocucB0671
CsaV3_7G001960Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G001960Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G001960Wild cucumber (PI 183967)cpicucB375
CsaV3_7G001960Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G001960Melon (DHL92) v3.5.1cucmeB534
CsaV3_7G001960Melon (DHL92) v3.6.1cucmedB521