Carg04101 (gene) Silver-seed gourd

Overview
NameCarg04101
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S11
LocationCucurbita_argyrosperma_scaffold_044 : 182206 .. 184535 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTGTTCATGAACAAAACTAACTTTTTATACCAAATTTAAAAATAAATTATTTTAAAAGACTAAATTTAAGATTTATGGAGTGTATGTATTTATTAAAACTTCAAAAGAAAATTTTGGCCCATTTTCATATGGTAAGCCCAATTCTCCTGTAAAGCCCATCTATTGTCGTCTGCTCTATAACTCTCTGAAGCAGGTTTAGGGTTTCTGTAATCGAACTCTGCTCCTTCGGCCGCTCGAGCGAACCAGAACGCTTGCTCTCTTCGGAAGCCCTAATCATGGCGGAGCAGGTTTCTATTGAATTGGCGACATTCATTTCCTTTTTCATTTTAGTGACTTTAACATCTCTGTACTCTTCATCTTTTTTCCGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGGTAAACGAATTCAATTTTTTGTTTTTTGTTCAGTTTTTGAATGACGTGCTTTGGTGTTCTTATTTTTTGAATTGTTGTTCTGTTTTGCTTTTATATCTTGATTTGATTTTGTTTTTATGATTTGTGTTGTTCTAATTATTAATCTATTTCGTTTTCAAAATAGCTCTAAAAAGAGTGGGAAGGGGAAGAGACCTGGAAAGGGCGGGAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGTTCTGTTTTTCACAACTCTGATCACCTTATGTTTGTTGGCTTGCTAATATGAATGTTTTTAGTCTTTTTGTCTTTCGACTTTGCTCGAGTATCATACACTGGAAGCCAGACTCATTGTTTGCTCTGAACCTTCCCGTTGTACTCTTATCTCCAATAGAAAACCGTAATTTGATCATTTTTAACCTGGTATACAGCTTCATTGATTGTATTCTCTATTGGAAGTTAGTTATTAACTGTTTCCTATGAACATGATGAGATGGAGCTGCATCCTCATTGACATGAAATTAGCAGTCTTGTAGGATTGCTTATTCAATTGCTATTGTTCGAATGCTGAGAGGATACAACTTATTGAAAAAACATAATGAGCTGAAGGGATAGTTGTGTTGAGGACTTATCATCTTTTATTTAGAATAGGTGTATGTTTCTGCATTGATACAACAGTATCTACTAGATGGATCGTTGAGGGAGTCCAAAATATCAAGGAATTTTGTTGATGGAATGATGCCAAACTTAGTCCTCTGCAATCAATTATGTATGATTAAGAAAAATTGCCACAGCATTGCGTTTATCGAGAGATTCAAGATTGATTATTAGAATTCTAATGATGTATCCCCATTCTAGGCTTGGTATCCTCACTTACCCTATGTACTGTATTCATTCTTAGCAAGGCCCAATATTTAGGCGTATATTGCTCTCATGTCCTGTGAATTGTTGCTGCAAATAAGAATTCATCCCGTGAAGGGGAATTTCTTTGCAATATTGCATCCTCATTTACCCTATGTATTGTATGCATCCTTATCTCTAAATTTTAAGACCCTATTTAGGCATATCTTGCTATTATGTTCTTTTGAATTGTTGCTATTTACTTACTGATTATTCCAGTTCTGTTGCATTCATGCAGGAACATATATTGATAAGAAATGCCCCTTTACCGGAACTGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTGCTTTACTGAACTCCACCCTACCCACACACAGTCAGCACCACCGCCACTGCCATCTGATTTTTCTTTTCGCGGTTTTGACATATTTTGTTTCTTCTTTCTCCTTCAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATCGGCCAATGCAGGTACATTAAGATATGAAAAATTCTTTCCATTGATTGCTGTTATTATATCTTTTATTTTGTATTTTTTTTCCAAGACTTGTTTCACATTTACCGTGTTTGAATGAATTTCAGGCCATTGTCGAAGACAGTTAGGTTCAATGTATTGAAGGTCATTCCTGCTGGATCCTCAAGTAGTGGGAAGAAGGCTTTTGCGGGGATATAAATAACGTAGGCTTCCTCTTTTGATACAAAAACAGCAACTGTTTAGAGTTGTAAGCCATATTTAATTCAACAGAGTTTTGAAGACTTCTAGTCTGAATTTTGATTCGAGTATGAACTGTTTTATTGTGTTCTATTTGTTTTGATTTCTGGCAAATTTAGGTGGGTAATCTCAATGATTAATGTTAGATTGTTCATGTTTCAATTG

mRNA sequence

AAGCTGTTCATGAACAAAACTAACTTTTTATACCAAATTTAAAAATAAATTATTTTAAAAGACTAAATTTAAGATTTATGGAGTGTATGTATTTATTAAAACTTCAAAAGAAAATTTTGGCCCATTTTCATATGGTAAGCCCAATTCTCCTGTAAAGCCCATCTATTGTCGTCTGCTCTATAACTCTCTGAAGCAGGTTTAGGGTTTCTGTAATCGAACTCTGCTCCTTCGGCCGCTCGAGCGAACCAGAACGCTTGCTCTCTTCGGAAGCCCTAATCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGCTCTAAAAAGAGTGGGAAGGGGAAGAGACCTGGAAAGGGCGGGAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGAACATATATTGATAAGAAATGCCCCTTTACCGGAACTGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATCGGCCAATGCAGGCCATTGTCGAAGACAGTTAGGTTCAATGTATTGAAGGTCATTCCTGCTGGATCCTCAAGTAGTGGGAAGAAGGCTTTTGCGGGGATATAAATAACGTAGGCTTCCTCTTTTGATACAAAAACAGCAACTGTTTAGAGTTGTAAGCCATATTTAATTCAACAGAGTTTTGAAGACTTCTAGTCTGAATTTTGATTCGAGTATGAACTGTTTTATTGTGTTCTATTTGTTTTGATTTCTGGCAAATTTAGGTGGGTAATCTCAATGATTAATGTTAGATTGTTCATGTTTCAATTG

Coding sequence (CDS)

ATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGCTCTAAAAAGAGTGGGAAGGGGAAGAGACCTGGAAAGGGCGGGAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGAACATATATTGATAAGAAATGCCCCTTTACCGGAACTGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATCGGCCAATGCAGGCCATTGTCGAAGACAGTTAGGTTCAATGTATTGAAGGTCATTCCTGCTGGATCCTCAAGTAGTGGGAAGAAGGCTTTTGCGGGGATATAA

Protein sequence

MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI
Homology
[Close]
BLAST of Carg04101 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 1.0e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of Carg04101 vs. NCBI nr
Match: XP_023554629.1 (40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.4 bits (825), Expect = 8.6e-85
Identity = 157/159 (98.74%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 159

[Close]
BLAST of Carg04101 vs. NCBI nr
Match: XP_008447825.1 (PREDICTED: 40S ribosomal protein S11-like [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 4.7e-83
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+ KGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of Carg04101 vs. NCBI nr
Match: XP_021276103.1 (40S ribosomal protein S11 [Herrania umbratica])

HSP 1 Score: 316.6 bits (810), Expect = 4.7e-83
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGL FKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLSFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM+RTIIVRRNYLHY+KKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of Carg04101 vs. NCBI nr
Match: PON46140.1 (Ribosomal protein [Parasponia andersonii] >PON71303.1 Ribosomal protein [Parasponia andersonii] >PON89846.1 Ribosomal protein [Trema orientalis])

HSP 1 Score: 316.6 bits (810), Expect = 4.7e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKS KGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of Carg04101 vs. TAIR10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 302.8 bits (774), Expect = 1.3e-82
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWK+IGLGFKTPREA++G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSS-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSSS GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of Carg04101 vs. TAIR10
Match: AT5G23740.1 (ribosomal protein S11-beta)

HSP 1 Score: 301.2 bits (770), Expect = 3.7e-82
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK SGKGKRPGKGGNRFWK+IGLGFKTPREA++G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of Carg04101 vs. TAIR10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 299.7 bits (766), Expect = 1.1e-81
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWK+IGLGFKTPREA+EGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSSS GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

[Close]
BLAST of Carg04101 vs. Swiss-Prot
Match: sp|P25460|RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.6e-82
Identity = 146/156 (93.59%), Postives = 154/156 (98.72%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGK+PGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAF 157
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS+++GKKAF
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]
BLAST of Carg04101 vs. Swiss-Prot
Match: sp|Q9M5M1|RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.0e-81
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKGKRPGKGGNRFWKSIGLGFKTPREA++GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAF  I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]
BLAST of Carg04101 vs. Swiss-Prot
Match: sp|P16181|RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.3e-81
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWK+IGLGFKTPREA++G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSS-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSSS GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of Carg04101 vs. Swiss-Prot
Match: sp|P17093|RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-81
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL +KK+GKGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS  KKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]
BLAST of Carg04101 vs. Swiss-Prot
Match: sp|P42733|RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 301.2 bits (770), Expect = 6.7e-81
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK SGKGKRPGKGGNRFWK+IGLGFKTPREA++G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of Carg04101 vs. TrEMBL
Match: tr|A0A2P5DDD1|A0A2P5DDD1_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074430 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.1e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKS KGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of Carg04101 vs. TrEMBL
Match: tr|A0A2P5EWD1|A0A2P5EWD1_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_143690 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.1e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKS KGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of Carg04101 vs. TrEMBL
Match: tr|A0A1S3BHR3|A0A1S3BHR3_CUCME (40S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.1e-83
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+ KGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of Carg04101 vs. TrEMBL
Match: tr|A0A1S3BCY7|A0A1S3BCY7_CUCME (40S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 4.1e-83
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

[Close]
BLAST of Carg04101 vs. TrEMBL
Match: tr|A0A0A0LPP1|A0A0A0LPP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382430 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 4.1e-83
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAGGKKAFAGI 159

The following BLAST results are available for this feature:
BLAST of Carg04101 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952178.11.0e-85100.0040S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma... [more]
XP_023554629.18.6e-8598.7440S ribosomal protein S11-like [Cucurbita pepo subsp. pepo][more]
XP_008447825.14.7e-8396.23PREDICTED: 40S ribosomal protein S11-like [Cucumis melo][more]
XP_021276103.14.7e-8395.6040S ribosomal protein S11 [Herrania umbratica][more]
PON46140.14.7e-8396.23Ribosomal protein [Parasponia andersonii] >PON71303.1 Ribosomal protein [Paraspo... [more]
BLAST of Carg04101 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48930.11.3e-8291.25Nucleic acid-binding, OB-fold-like protein[more]
AT5G23740.13.7e-8290.57ribosomal protein S11-beta[more]
AT4G30800.11.1e-8190.57Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Carg04101 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P25460|RS11_MAIZE3.6e-8293.5940S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1[more]
sp|Q9M5M1|RS11_EUPES1.0e-8191.8240S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1[more]
sp|P16181|RS111_ARATH2.3e-8191.2540S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1[more]
sp|P17093|RS11_SOYBN3.0e-8191.8240S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2[more]
sp|P42733|RS113_ARATH6.7e-8190.5740S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2[more]
BLAST of Carg04101 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5DDD1|A0A2P5DDD1_PARAD3.1e-8396.23Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074430 PE=3 SV=... [more]
tr|A0A2P5EWD1|A0A2P5EWD1_9ROSA3.1e-8396.23Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_143690 PE=3 SV=1[more]
tr|A0A1S3BHR3|A0A1S3BHR3_CUCME3.1e-8396.2340S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1[more]
tr|A0A1S3BCY7|A0A1S3BCY7_CUCME4.1e-8396.2340S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1[more]
tr|A0A0A0LPP1|A0A0A0LPP1_CUCSA4.1e-8396.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382430 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR019979Ribosomal_S17_CS
IPR028333Ribosomal_S17_arc-typ
IPR032440Ribosomal_S11_N
IPR000266Ribosomal_S17/S11
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04101-RACarg04101-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 131..138
score: 73.25
coord: 121..131
score: 60.91
coord: 88..111
score: 37.33
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 74..142
e-value: 1.8E-25
score: 88.7
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..159
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 70..140
e-value: 3.0E-34
score: 360.0
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 4..72
e-value: 1.9E-31
score: 108.1
NoneNo IPR availableGENE3DG3DSA:2.40.50.1000coord: 1..159
e-value: 4.1E-81
score: 272.1
NoneNo IPR availablePANTHERPTHR10744:SF1740S RIBOSOMAL PROTEIN S11-1-RELATEDcoord: 1..159
IPR028333Ribosomal protein S17, archaeal/eukaryoticTIGRFAMTIGR03630TIGR03630coord: 54..143
e-value: 6.4E-34
score: 114.0
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 121..133
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 68..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg04101Cla015738Watermelon (97103) v1carwmB0194
Carg04101Csa7G025720Cucumber (Chinese Long) v2carcuB0228
Carg04101MELO3C013245Melon (DHL92) v3.5.1carmeB0201
Carg04101ClCG02G003370Watermelon (Charleston Gray)carwcgB0194
Carg04101Cucsa.099770Cucumber (Gy14) v1carcgyB0237
Carg04101CmaCh19G008020Cucurbita maxima (Rimu)carcmaB0279
Carg04101CmoCh19G008240Cucurbita moschata (Rifu)carcmoB0286
Carg04101Lsi11G012930Bottle gourd (USVL1VR-Ls)carlsiB174
Carg04101CsGy7G001820Cucumber (Gy14) v2carcgybB0217
Carg04101MELO3C013245.2Melon (DHL92) v3.6.1carmedB0206
Carg04101CsaV3_7G001960Cucumber (Chinese Long) v3carcucB0232
Carg04101Cla97C02G029920Watermelon (97103) v2carwmbB0202
Carg04101Bhi05G001351Wax gourdcarwgoB0251
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg04101Silver-seed gourdcarcarB232
Carg04101Silver-seed gourdcarcarB237
Carg04101Silver-seed gourdcarcarB242
Carg04101Cucumber (Gy14) v2carcgybB0216
Carg04101Cucumber (Gy14) v1carcgyB0240
Carg04101Cucurbita maxima (Rimu)carcmaB0272
Carg04101Cucurbita maxima (Rimu)carcmaB0280
Carg04101Cucurbita maxima (Rimu)carcmaB0281
Carg04101Cucurbita moschata (Rifu)carcmoB0276
Carg04101Cucurbita moschata (Rifu)carcmoB0287
Carg04101Cucurbita moschata (Rifu)carcmoB0288
Carg04101Cucurbita pepo (Zucchini)carcpeB0281
Carg04101Cucurbita pepo (Zucchini)carcpeB0282
Carg04101Cucurbita pepo (Zucchini)carcpeB0288
Carg04101Wild cucumber (PI 183967)carcpiB0234
Carg04101Wild cucumber (PI 183967)carcpiB0235
Carg04101Cucumber (Chinese Long) v2carcuB0227
Carg04101Cucumber (Chinese Long) v3carcucB0231
Carg04101Bottle gourd (USVL1VR-Ls)carlsiB173
Carg04101Melon (DHL92) v3.5.1carmeB0197
Carg04101Melon (DHL92) v3.6.1carmedB0201
Carg04101Watermelon (Charleston Gray)carwcgB0195