CsaV3_7G001780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G001780
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 1471522 .. 1472254 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGATGGAAGCTAATGAATCAGTTAAATTCGGTGGTAATCACCTGGTACATATTTGTGCTCATTTCACCTTATAGCCAAAAGGGTACCGATGCCACAACTAACCTCGACGAAGAAGGAAACTGTGTAAACTCCGCAAACCCAAATGGAAGAAAGGCAAGAAGAGTAAATGGAAATCAAAGTTTCAAAAATACTAATAAGATACTGATAAATTTTGGAGAGAAGCGGGAATCACGAATCAAACTTTGAATATAGTCATAAAACCATTCAAACATTAACGGAAATGGAGATGATAGCAGCTACTCCCAACCAAAAAGAAAAAAAAAATCAGAGAAATCGCCATTAGAATCAAGAAGAAAACAGAGCCACAGAACGACCGAATAGTCAATAAACGACGCCGTAGAGCTTCATCAAAACTGATTGGTCACAGAGACGAAAGAAAGGAATTCCCTTACCCGAATCAGGAATAAACCCTAGAGAACTGTGCAGCAGAAGCACGGGGAAGGCACGTGACTTGGGGAGTCCCGTGCGTCCCGTCAGCGTCCCACTACGACGGAGGGGAAGAAAATTTTGCCAATTGCTAACCTCCAAATTCCAATACACCTCTATCCTTATCGTCTCTTTATATCAATTCCTTTCACCATCAAAGCTTGAGCTAGCGATCTTCGTCACTCTCGGTCAGAATGACGCACATCGTCCACCGTTGCGGCCGGTCGCCGGCGTTGCTTGA

mRNA sequence

ATGGAAGGATGGAAGCTAATGAATCAGTTAAATTCGGTGGTAATCACCTGGTACATATTTGTGCTCATTTCACCTTATAGCCAAAAGGGTACCGATGCCACAACTAACCTCGACGAAGAAGGAAACTGTGTAAACTCCGCAAACCCAAATGGAAGAAAGGCAAGAAGAAGACGAAAGAAAGGAATTCCCTTACCCGAATCAGGAATAAACCCTAGAGAACTGTGCAGCAGAAGCACGGGGAAGGCACGTGACTTGGGGAGTCCCGTGCGTCCCGTCAGCGTCCCACTACGACGGAGGGGAAGAAAATTTTGCCAATTGCTAACCTCCAAATTCCAATACACCTCTATCCTTATCGTCTCTTTATATCAATTCCTTTCACCATCAAAGCTTGAGCTAGCGATCTTCGTCACTCTCGGTCAGAATGACGCACATCGTCCACCGTTGCGGCCGGTCGCCGGCGTTGCTTGA

Coding sequence (CDS)

ATGGAAGGATGGAAGCTAATGAATCAGTTAAATTCGGTGGTAATCACCTGGTACATATTTGTGCTCATTTCACCTTATAGCCAAAAGGGTACCGATGCCACAACTAACCTCGACGAAGAAGGAAACTGTGTAAACTCCGCAAACCCAAATGGAAGAAAGGCAAGAAGAAGACGAAAGAAAGGAATTCCCTTACCCGAATCAGGAATAAACCCTAGAGAACTGTGCAGCAGAAGCACGGGGAAGGCACGTGACTTGGGGAGTCCCGTGCGTCCCGTCAGCGTCCCACTACGACGGAGGGGAAGAAAATTTTGCCAATTGCTAACCTCCAAATTCCAATACACCTCTATCCTTATCGTCTCTTTATATCAATTCCTTTCACCATCAAAGCTTGAGCTAGCGATCTTCGTCACTCTCGGTCAGAATGACGCACATCGTCCACCGTTGCGGCCGGTCGCCGGCGTTGCTTGA

Protein sequence

MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKKGIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVSLYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA
Homology
[Close]
BLAST of CsaV3_7G001780 vs. NCBI nr
Match: KGN43331.1 (hypothetical protein Csa_7G024050 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60
           MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK
Sbjct: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60

Query: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120
           GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS
Sbjct: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120

Query: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 156
           LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA
Sbjct: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 155

[Close]
BLAST of CsaV3_7G001780 vs. TrEMBL
Match: tr|A0A0A0K670|A0A0A0K670_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024050 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 7.6e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60
           MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK
Sbjct: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60

Query: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120
           GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS
Sbjct: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120

Query: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 156
           LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA
Sbjct: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 155

The following BLAST results are available for this feature:
BLAST of CsaV3_7G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43331.11.1e-81100.00hypothetical protein Csa_7G024050 [Cucumis sativus][more]
BLAST of CsaV3_7G001780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G001780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G001780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K670|A0A0A0K670_CUCSA7.6e-82100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024050 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G001780.1CsaV3_7G001780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..91