CsGy7G001600 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G001600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 1447909 .. 1448641 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGATGGAAGCTAATGAATCAGTTAAATTCGGTGGTAATCACCTGGTACATATTTGTGCTCATTTCACCTTATAGCCAAAAGGGTACCGATGCCACAACTAACCTCGACGAAGAAGGAAACTGTGTAAACTCCGCAAACCCAAATGGAAGAAAGGCAAGAAGAGTAAATGGAAATCAAAGTTTCAAAAATACTAATAAGATACTGATAAATTTTGGAGAGAAGCGGGAATCACGAATCAAACTTTGAATATAGTCATAAAACCATTCAAACATTAACGGAAATGGAGATGATAGCAGCTACTCCCAACCAAAAAGAAAAAAAAAATCAGAGAAATCGCCATTAGAATCAAGAAGAAAACAGAGCCACAGAACGACCGAATAGTCAATAAACGACGCCGTAGAGCTTCATCAAAACTGATTGGTCACAGAGACGAAAGAAAGGAATTCCCTTACCCGAATCAGGAATAAACCCTAGAGAACTGTGCAGCAGAAGCACGGGGAAGGCACGTGACTTGGGGAGTCCCGTGCGTCCCGTCAGCGTCCCACTACGACGGAGGGGAAGAAAATTTTGCCAATTGCTAACCTCCAAATTCCAATACACCTCTATCCTTATCGTCTCTTTATATCAATTCCTTTCACCATCAAAGCTTGAGCTAGCGATCTTCGTCACTCTCGGTCAGAATGACGCACATCGTCCACCGTTGCGGCCGGTCGCCGGCGTTGCTTGA

mRNA sequence

ATGGAAGGATGGAAGCTAATGAATCAGTTAAATTCGGTGGTAATCACCTGGTACATATTTGTGCTCATTTCACCTTATAGCCAAAAGGGTACCGATGCCACAACTAACCTCGACGAAGAAGGAAACTGTGTAAACTCCGCAAACCCAAATGGAAGAAAGGCAAGAAGAAGACGAAAGAAAGGAATTCCCTTACCCGAATCAGGAATAAACCCTAGAGAACTGTGCAGCAGAAGCACGGGGAAGGCACGTGACTTGGGGAGTCCCGTGCGTCCCGTCAGCGTCCCACTACGACGGAGGGGAAGAAAATTTTGCCAATTGCTAACCTCCAAATTCCAATACACCTCTATCCTTATCGTCTCTTTATATCAATTCCTTTCACCATCAAAGCTTGAGCTAGCGATCTTCGTCACTCTCGGTCAGAATGACGCACATCGTCCACCGTTGCGGCCGGTCGCCGGCGTTGCTTGA

Coding sequence (CDS)

ATGGAAGGATGGAAGCTAATGAATCAGTTAAATTCGGTGGTAATCACCTGGTACATATTTGTGCTCATTTCACCTTATAGCCAAAAGGGTACCGATGCCACAACTAACCTCGACGAAGAAGGAAACTGTGTAAACTCCGCAAACCCAAATGGAAGAAAGGCAAGAAGAAGACGAAAGAAAGGAATTCCCTTACCCGAATCAGGAATAAACCCTAGAGAACTGTGCAGCAGAAGCACGGGGAAGGCACGTGACTTGGGGAGTCCCGTGCGTCCCGTCAGCGTCCCACTACGACGGAGGGGAAGAAAATTTTGCCAATTGCTAACCTCCAAATTCCAATACACCTCTATCCTTATCGTCTCTTTATATCAATTCCTTTCACCATCAAAGCTTGAGCTAGCGATCTTCGTCACTCTCGGTCAGAATGACGCACATCGTCCACCGTTGCGGCCGGTCGCCGGCGTTGCTTGA

Protein sequence

MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKKGIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVSLYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA

Homology

[Close]

BLAST of CsGy7G001600 vs. NCBI nr
Match: KGN43331.1 (hypothetical protein Csa_7G024050 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 1.9e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60
           MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK
Sbjct: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60

Query: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120
           GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS
Sbjct: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120

Query: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 156
           LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA
Sbjct: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 155

[Close]

BLAST of CsGy7G001600 vs. TrEMBL
Match: tr|A0A0A0K670|A0A0A0K670_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024050 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.3e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60
           MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK
Sbjct: 1   MEGWKLMNQLNSVVITWYIFVLISPYSQKGTDATTNLDEEGNCVNSANPNGRKARRRRKK 60

Query: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120
           GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS
Sbjct: 61  GIPLPESGINPRELCSRSTGKARDLGSPVRPVSVPLRRRGRKFCQLLTSKFQYTSILIVS 120

Query: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 156
           LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA
Sbjct: 121 LYQFLSPSKLELAIFVTLGQNDAHRPPLRPVAGVA 155

The following BLAST results are available for this feature:

BLAST of CsGy7G001600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43331.1	1.9e-81	100.00	hypothetical protein Csa_7G024050 [Cucumis sativus]	[more]

BLAST of CsGy7G001600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G001600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G001600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K670\|A0A0A0K670_CUCSA	1.3e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024050 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G001600.1	CsGy7G001600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G001600	Csa7G024050	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G001600	ClCG02G003520	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G001600	CSPI07G01670	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G001600	CsaV3_7G001780	Cucumber (Chinese Long) v3	cgybcucB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G001600	Cucurbita maxima (Rimu)	cgybcmaB899
CsGy7G001600	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G001600	Cucurbita maxima (Rimu)	cgybcmaB957
CsGy7G001600	Cucurbita maxima (Rimu)	cgybcmaB959
CsGy7G001600	Cucurbita moschata (Rifu)	cgybcmoB877
CsGy7G001600	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G001600	Cucurbita moschata (Rifu)	cgybcmoB938
CsGy7G001600	Cucurbita moschata (Rifu)	cgybcmoB942
CsGy7G001600	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G001600	Cucurbita pepo (Zucchini)	cgybcpeB921
CsGy7G001600	Cucurbita pepo (Zucchini)	cgybcpeB964
CsGy7G001600	Cucurbita pepo (Zucchini)	cgybcpeB978
CsGy7G001600	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G001600	Melon (DHL92) v3.5.1	cgybmeB469
CsGy7G001600	Melon (DHL92) v3.6.1	cgybmedB466
CsGy7G001600	Watermelon (97103) v1	cgybwmB566
CsGy7G001600	Silver-seed gourd	carcgybB0217
CsGy7G001600	Silver-seed gourd	carcgybB0361
CsGy7G001600	Silver-seed gourd	carcgybB0846
CsGy7G001600	Silver-seed gourd	carcgybB1049
CsGy7G001600	Watermelon (97103) v2	cgybwmbB502
CsGy7G001600	Wax gourd	cgybwgoB641