CsaV3_6G033740 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G033740
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	peptidyl-prolyl cis-trans isomerase E
Location	chr6 : 18621949 .. 18624147 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAAATAAAACAACAAAGCGAAGCAAATTTACAGAAACGAAGAAGACGAAGAAAAAACATTCACAAACGCCTCTAATGGCGCAGGCCGTTCAGAAAAACACTCTATACGTCGGTGGTTTAGCGGAGGAGGTGAACGAATCTATTCTTCACGCAGCCTTCATTCCCTTCGGCGACATCAAAGACGTCAAGACGCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAAAAGGAAGATGCATCCGCTGCTATGGATAATATGGACGGTGCTGAGCTTTATGGTCGTGTGCTTACTGTTAACTATGCCCTCCCTGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCTCAACCTAGTAAGTTCCCTGATTCCTTAAACCCTAGTTCTCATCCTTTATTCATTCTCTGCATTTCTAATATGTTGTTTCTGTTGCTTCCCATTGAGGTGCATGTACTTCATTAATTACTAGTTTTGCTGTGATTTCATGCTTGTGATAGGAGTTCTTGAGAATGGGAATTTGAACTTAGAATGATGCTTGGGTGTGTAGGTGATCTTTTGTGTGTTTTTAATCTTTAATTTTCATTCTTTCAATTTCAATTGTTTTGTTAATGCAATGAAAAGTTCAGCCAAGGTGATTTCTAATTTTATTTCTAATCAAGTGCATCATCGTAAACCACGTGTTTGGATGCCATACTAAAGTTTAAAAAACAAAGACTGAAATTGGGTTTTATGCAAACATTAGAAATTGAACCAAAGCTTTGGTAAAAACTAAATTTTGGTGAAGTTTAGGGTCAAAATTAGATTCAAACTTGAAACCTTAGGACGTTCCATGTACAATGATTTGTTAAAGAATTGTGTAAATGCAAACTCTGGCAGTTATACTTATACTGCAGAAATGAGATTGAACCATACGATGTTATCAATTTCGAATAACCCAACTTTCGATGAGAAAAAAATGAGAGAATTTGGACGGAGTTTAATTTCAGAGGTTAGTTTGAAGTTATACTTACGACATGATTTGAAAAGGGGAGATTTAGGATTTATTTAGATTATGGCGGTGTGTCTAAATCTCCTACCTTGGATGCTGATTTTTTCCAGTTTTGAGATGAGAATCAATTGAGTATTTCTTCCTTTCCTGCCAAGATGAGCGTAATTTAGTAGTTAAGGTATCGACTTGTTGTCCTGACCTTTGAGGTTCAAATTTGCAGTCCTTCATTTGTTGTATTTGTACAAAACAAAAATTTATTCCATTTCCTTGACTGTCCTTTTATTTCTCTTTTTCCCCAATATTCATGTTCTCGGGTATCATCGCTACTTGTTCTTAATCTTTTATGAGTTGAGAATTGAGTGTATGAAGTTTTTCTGTATGTTTATTATCGAGTGCCTGGTTCACTCTGATTGCATCAACTCTTCAGAGTTGTCTTCTTAGCACTTAAGGACACAGTTGCACAACCTATTAAGACAGCTCCTGTTCAAGTAAGGACGTGTCTCAACCCGTGCATCTTGGTGATTGTGAATTGTTGACTGGTGTAAAGGCCTGTTATTGGCAATCAGTAGCCTTGTTTACTTCTCGTTCCTTCTCCATTTCACTGGACCATTTCGTATGATTGAAATATGTCAGATTGCAATATTGATCTTACAAATGGGTCAGAGTGAGCGATGCTTCCCATCTTCTTCTCCTAAACCTTACGAAATAAATGATTTTGCTTAATATTCCAGTTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGTCTTCAAGCTGAGAATCGAGCAGCTATGGAGGCTGCGGAGGAGCTGCACAGGAAGAAACTAGCGCAGGAACGAGAAGGGGAGAAAGACGAGGAGGTAGACACCAAGGTCGATCCCATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAGAACAGTTGAAAACCTACCATTCTGTGAGGTTCCTCTTCACAATGACATTCTCCTTCTGCTCCCGTAGTTAATTCCATTCACAAAGTATAGTTTTGATAAGCTGAAAAATATTCACATTTCATGAATTTTTGTAATCTTATTGGAAAAGAATACCTTAGAAAGTAGGAGTTTTAAATCTGGCAGCACTGTTGTTTTAGTTCACCCCTTCCTCCGCTTTGTTCTTTTAATTCCATTGAGTTTTTTTTTTTTTT

mRNA sequence

ATGGCGCAGGCCGTTCAGAAAAACACTCTATACGTCGGTGGTTTAGCGGAGGAGGTGAACGAATCTATTCTTCACGCAGCCTTCATTCCCTTCGGCGACATCAAAGACGTCAAGACGCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAAAAGGAAGATGCATCCGCTGCTATGGATAATATGGACGGTGCTGAGCTTTATGGTCGTGTGCTTACTGTTAACTATGCCCTCCCTGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCTCAACCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGTCTTCAAGCTGAGAATCGAGCAGCTATGGAGGCTGCGGAGGAGCTGCACAGGAAGAAACTAGCGCAGGAACGAGAAGGGGAGAAAGACGAGGAGGTAGACACCAAGGTCGATCCCATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAGAACAGTTGA

Coding sequence (CDS)

ATGGCGCAGGCCGTTCAGAAAAACACTCTATACGTCGGTGGTTTAGCGGAGGAGGTGAACGAATCTATTCTTCACGCAGCCTTCATTCCCTTCGGCGACATCAAAGACGTCAAGACGCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAAAAGGAAGATGCATCCGCTGCTATGGATAATATGGACGGTGCTGAGCTTTATGGTCGTGTGCTTACTGTTAACTATGCCCTCCCTGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCTCAACCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGTCTTCAAGCTGAGAATCGAGCAGCTATGGAGGCTGCGGAGGAGCTGCACAGGAAGAAACTAGCGCAGGAACGAGAAGGGGAGAAAGACGAGGAGGTAGACACCAAGGTCGATCCCATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAGAACAGTTGA

Protein sequence

MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRLQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS

Homology

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BLAST of CsaV3_6G033740 vs. NCBI nr
Match: XP_004144165.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 hypothetical protein Csa_6G366550 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 6.9e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

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BLAST of CsaV3_6G033740 vs. NCBI nr
Match: XP_008445441.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 2.2e-86
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTK DPMAKAEAEVLRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

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BLAST of CsaV3_6G033740 vs. NCBI nr
Match: XP_022132314.1 (peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 peptidyl-prolyl cis-trans isomerase E [Momordica charantia])

HSP 1 Score: 321.6 bits (823), Expect = 1.6e-84
Identity = 163/169 (96.45%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRLQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR+Q
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           AENRAAM+AAEELHRKKLAQEREGEK++E+DTK DPMAKAEAEVLRQNS
Sbjct: 124 AENRAAMQAAEELHRKKLAQEREGEKEDEIDTKDDPMAKAEAEVLRQNS 172

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BLAST of CsaV3_6G033740 vs. NCBI nr
Match: XP_022961878.1 (peptidyl-prolyl cis-trans isomerase E [Cucurbita moschata] >XP_022997282.1 peptidyl-prolyl cis-trans isomerase E [Cucurbita maxima] >XP_023545633.1 peptidyl-prolyl cis-trans isomerase E [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 2.1e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 171

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BLAST of CsaV3_6G033740 vs. NCBI nr
Match: XP_002265598.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Vitis vinifera] >CBI36679.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 308.9 bits (790), Expect = 1.1e-80
Identity = 156/171 (91.23%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           M Q VQKNTLYVGGLAEEVNESILH+AFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MNQPVQKNTLYVGGLAEEVNESILHSAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DA+AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           +QAENRAAM+AAEELHRKK+AQEREGEKDEEV+ K DPMA+ EAEVL Q++
Sbjct: 121 IQAENRAAMQAAEELHRKKMAQEREGEKDEEVEGKDDPMARVEAEVLNQSN 171

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BLAST of CsaV3_6G033740 vs. TAIR10
Match: AT1G13690.1 (ATPase E1)

HSP 1 Score: 285.4 bits (729), Expect = 2.3e-77
Identity = 140/165 (84.85%), Postives = 157/165 (95.15%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QA+QKNTLYVGGLA+EVNESILHAAFIPFGDIKDVKTPLDQA QKHRSFGFVTFLE+EDA
Sbjct: 8   QAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDA 67

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRLQ 122
           SAAMDNMDGAELYGRVLTVNYALPE+IKGGEQGWAA P+WADADTWFERQQQE+E+ ++Q
Sbjct: 68  SAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAHPLWADADTWFERQQQEKEILKMQ 127

Query: 123 AENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVL 168
           AEN+AAME AEELHRKKLA++R+GE +E+ DTK DPMA+AEA+ L
Sbjct: 128 AENKAAMETAEELHRKKLAEDRQGEMEEDTDTKNDPMARAEADAL 172

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BLAST of CsaV3_6G033740 vs. TAIR10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 77.8 bits (190), Expect = 7.3e-15
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + L++GG+A  ++E  L  AF  +G++ D +  LD+ T + R FGFVTF   E A
Sbjct: 35  RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94

Query: 63  SAAMDNMDGAELYGRVLTVNYA 85
           S+A+  +DG +L+GRV+ VNYA
Sbjct: 95  SSAIQALDGRDLHGRVVKVNYA 116

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BLAST of CsaV3_6G033740 vs. TAIR10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 2   AQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKED 61
           + A   + L++GGL+  V+E  L  AF  FG++ +V+   D+ + + R FGFV F E+ D
Sbjct: 35  SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query: 62  ASAAMDNMDGAELYGRVLTVNYALPERIKGG 93
           A +A D MDG  L GR L +++AL ER++GG
Sbjct: 95  ALSAKDAMDGKGLLGRPLRISFAL-ERVRGG 124

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BLAST of CsaV3_6G033740 vs. TAIR10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2)

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10  LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNM 69
           L++GGL+   +++ L  AF  FGD+ D K  +D+ T + R FGFV F ++  A+AA+  M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 70  DGAELYGRVLTVNYA 85
           DG EL GR + VN A
Sbjct: 97  DGKELNGRHIRVNPA 111

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BLAST of CsaV3_6G033740 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + ++VGG++   +E  L  AF  +G++ D K  +D+ T + R F FVTF   E+A
Sbjct: 29  RCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA 88

Query: 63  SAAMDNMDGAELYGRVLTVNYA 85
           S AM  +DG +L+GR + VNYA
Sbjct: 89  SNAM-QLDGQDLHGRRIRVNYA 109

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BLAST of CsaV3_6G033740 vs. Swiss-Prot
Match: sp|A4FV72|PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

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BLAST of CsaV3_6G033740 vs. Swiss-Prot
Match: sp|Q9QZH3|PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of CsaV3_6G033740 vs. Swiss-Prot
Match: sp|Q5R723|PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-27
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW--------FERQQQE 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W         E  ++E
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 EEMQRLQAENRAAMEAAEE 135
           E  +  +AE +    AA++
Sbjct: 122 EGSEPPKAETQEGEPAAKK 135

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BLAST of CsaV3_6G033740 vs. Swiss-Prot
Match: sp|Q9UNP9|PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-25
Identity = 66/153 (43.14%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRLQA 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W  ++   + ++  + 
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWL-KKFSGKTLEENKE 121

Query: 124 ENRAAMEAAEELHRKKLAQEREGEKDEEVDTKV 157
           E  +    AE    + +A++        +D K+
Sbjct: 122 EEGSEPPKAETQEGEPIAKKARSNPQVYMDIKI 148

[Close]

BLAST of CsaV3_6G033740 vs. Swiss-Prot
Match: sp|Q9V3G3|PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp33 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.7e-22
Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = 0


Query: 7   KNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAM 66
           K T+YVGGLA+EV E +L+ AFIPFGDI D++ P D  +Q+HR F F+ + + EDA+AA+
Sbjct: 5   KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query: 67  DNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQ---------QQEEE 126
           DNM+ +EL GR + VN A P R+K      + +PIWAD D W ++          + E E
Sbjct: 65  DNMNDSELCGRTIRVNLAKPVRVKED----SFKPIWAD-DDWLQKHAGATLQPEGEPEAE 124

Query: 127 MQRLQAENRAAMEAAEELHRKKLAQEREGEKD 150
                +   A +E AE+ + +     R G  D
Sbjct: 125 KVETPSTGPAVIEKAEKRNPQVFFDIRIGGND 151

[Close]

BLAST of CsaV3_6G033740 vs. TrEMBL
Match: tr|A0A0A0KGY3|A0A0A0KGY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 4.6e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of CsaV3_6G033740 vs. TrEMBL
Match: tr|A0A1S3BCQ8|A0A1S3BCQ8_CUCME (peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTK DPMAKAEAEVLRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of CsaV3_6G033740 vs. TrEMBL
Match: tr|D7U1R3|D7U1R3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0102g00560 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 7.1e-81
Identity = 156/171 (91.23%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           M Q VQKNTLYVGGLAEEVNESILH+AFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MNQPVQKNTLYVGGLAEEVNESILHSAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DA+AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           +QAENRAAM+AAEELHRKK+AQEREGEKDEEV+ K DPMA+ EAEVL Q++
Sbjct: 121 IQAENRAAMQAAEELHRKKMAQEREGEKDEEVEGKDDPMARVEAEVLNQSN 171

[Close]

BLAST of CsaV3_6G033740 vs. TrEMBL
Match: tr|A0A2R6PBP1|A0A2R6PBP1_ACTCH (Peptidyl-prolyl cis-trans isomerase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc31447 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 9.2e-81
Identity = 156/171 (91.23%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           M QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLE+E
Sbjct: 1   MNQAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLERE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DA AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DAIAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           +QAENRAAMEAAEELHRKK+AQEREGEK+++  TKVDPMA AEAE L+ NS
Sbjct: 121 IQAENRAAMEAAEELHRKKMAQEREGEKEDDTATKVDPMAMAEAEALKPNS 171

[Close]

BLAST of CsaV3_6G033740 vs. TrEMBL
Match: tr|A0A067LA00|A0A067LA00_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15732 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 4.6e-80
Identity = 153/167 (91.62%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 5   VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 64
           VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA
Sbjct: 12  VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 71

Query: 65  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRLQAE 124
           AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQ+EEM+R+QAE
Sbjct: 72  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQQEEMERVQAE 131

Query: 125 NRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 172
           NRAAM+AAEELHRKK+A+EREGEK++ V+ K DPMA+AEAEVL+QNS
Sbjct: 132 NRAAMQAAEELHRKKMAEEREGEKEDAVEVKDDPMARAEAEVLKQNS 178

The following BLAST results are available for this feature:

BLAST of CsaV3_6G033740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144165.1	6.9e-88	100.00	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 h...	[more]
XP_008445441.1	2.2e-86	98.83	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo]	[more]
XP_022132314.1	1.6e-84	96.45	peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 pept...	[more]
XP_022961878.1	2.1e-84	95.32	peptidyl-prolyl cis-trans isomerase E [Cucurbita moschata] >XP_022997282.1 pepti...	[more]
XP_002265598.1	1.1e-80	91.23	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Vitis vinifera] >CBI36679.3 un...	[more]

BLAST of CsaV3_6G033740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13690.1	2.3e-77	84.85	ATPase E1	[more]
AT5G61030.1	7.3e-15	41.46	glycine-rich RNA-binding protein 3	[more]
AT3G08000.1	1.6e-14	41.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.1	9.8e-12	44.00	glycine-rich RNA-binding protein 2	[more]
AT1G74230.1	1.7e-11	39.02	glycine-rich RNA-binding protein 5	[more]

BLAST of CsaV3_6G033740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A4FV72\|PPIE_BOVIN	5.5e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1	[more]
sp\|Q9QZH3\|PPIE_MOUSE	5.5e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2	[more]
sp\|Q5R723\|PPIE_PONAB	7.9e-27	48.20	Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1	[more]
sp\|Q9UNP9\|PPIE_HUMAN	3.3e-25	43.14	Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1	[more]
sp\|Q9V3G3\|PPIE_DROME	7.7e-22	40.79	Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp3...	[more]

BLAST of CsaV3_6G033740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGY3\|A0A0A0KGY3_CUCSA	4.6e-88	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV=1	[more]
tr\|A0A1S3BCQ8\|A0A1S3BCQ8_CUCME	1.5e-86	98.83	peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE...	[more]
tr\|D7U1R3\|D7U1R3_VITVI	7.1e-81	91.23	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0102g00560 PE=4 SV=...	[more]
tr\|A0A2R6PBP1\|A0A2R6PBP1_ACTCH	9.2e-81	91.23	Peptidyl-prolyl cis-trans isomerase OS=Actinidia chinensis var. chinensis OX=159...	[more]
tr\|A0A067LA00\|A0A067LA00_JATCU	4.6e-80	91.62	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15732 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003755	peptidyl-prolyl cis-trans isomerase activity
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034168	PPIE_RRM
IPR024936	Cyclophilin-type_PPIase
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G033740.1	CsaV3_6G033740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..162
None	No IPR available	PANTHER	PTHR11071:SF319	SUBFAMILY NOT NAMED	coord: 9..131
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 3.2E-23 score: 93.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 e-value: 3.7E-19 score: 68.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 18.189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..98 e-value: 1.3E-25 score: 91.9
IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 9..131
IPR034168	Peptidyl-prolyl cis-trans isomerase E, RNA recognition motif	CDD	cd12347	RRM_PPIE	coord: 10..82 e-value: 2.79526E-43 score: 139.665
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 6..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G033740	CSPI06G19740	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G033740	Cucsa.327930	Cucumber (Gy14) v1	cgycucB508
CsaV3_6G033740	CmaCh05G004520	Cucurbita maxima (Rimu)	cmacucB0950
CsaV3_6G033740	CmoCh05G004780	Cucurbita moschata (Rifu)	cmocucB0937
CsaV3_6G033740	CsGy6G019290	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G033740	Carg09261	Silver-seed gourd	carcucB0166
CsaV3_6G033740	Cla022032	Watermelon (97103) v1	cucwmB481
CsaV3_6G033740	MELO3C011414	Melon (DHL92) v3.5.1	cucmeB475
CsaV3_6G033740	ClCG08G010490	Watermelon (Charleston Gray)	cucwcgB514
CsaV3_6G033740	Lsi08G009020	Bottle gourd (USVL1VR-Ls)	cuclsiB500
CsaV3_6G033740	MELO3C011414.2	Melon (DHL92) v3.6.1	cucmedB465
CsaV3_6G033740	Cla97C08G153340	Watermelon (97103) v2	cucwmbB505
CsaV3_6G033740	Bhi04G000923	Wax gourd	cucwgoB594
CsaV3_6G033740	Bhi08G000916	Wax gourd	cucwgoB660

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_6G033740	CsaV3_1G005980	Cucumber (Chinese Long) v3	cuccucB047

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G033740	Silver-seed gourd	carcucB0685
CsaV3_6G033740	Cucurbita maxima (Rimu)	cmacucB0220
CsaV3_6G033740	Cucurbita moschata (Rifu)	cmocucB0208
CsaV3_6G033740	Cucurbita pepo (Zucchini)	cpecucB0131
CsaV3_6G033740	Cucurbita pepo (Zucchini)	cpecucB1031