Carg09261 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09261
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	peptidyl-prolyl cis-trans isomerase E
Location	Cucurbita_argyrosperma_scaffold_018 : 272092 .. 274061 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAGAAGAATCCTGAAGAAAAGAGCATAATCGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACATGCAGCCTTCATTCCCTTTGGCGACATCAAAGATGTAAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTAGTAAGTTCCCCTTTTCCTTAAACCCTAATTATTTTCATCTATTGTTTCTCTGCATTTGTGAAATTCCGCTTGTGTTACATCTCATTGTTGATTGATAACTTCTTGGCTGTGCTCGATTACCTGTTTTGCTCTAATTTCATGCTATGATAGGAGTCCTTGAAAATAGAAATAGAATTTATGCAATCTATTTGGTTGCATTGCATACAATAGTGGTTCGTTGGTTATATTCTAAATCTTCAATTTCATTCTTACAATTTCAAATGTTTTGTTAGTGCAATAAAAAGTTTCAGTCTAGCCGATTTCTAATTTGATTTCAAATCAAATATATGTATCTGAAACTGATTTATATGCAAAATTCTGTGAAGGAACCAAAGCTAACAATTTAAAAAGTAAACTAAAATTTGGTTCATGTGGAAGTTCTGGACCAAAATTAGATTTAAACAGCTTATCATTTTCTGGTGCCGAAGTTTAATCCTTAGGACAAGTTTTGGAAATTGTTTTAAGATTTGGACTCGGCCATTTTAGGATTTATTTAGATTATGTTTGTGTATCTAAATCTCCTGCCTTGGTTGCTAATTACAAGTATTGCAATCTATGGCATTAGCATGCTGATAGTTTCCTCCATTCCTGCCAATATGAACCTAGCTTAGTAGTTAAAGCATCTACGAAGTTTGAGGTTCAAATTCTCGCAGCGTGTCGTATAAAACAAAAATATGTTCCATCTCCTTGACTGTTCTTTGATTTCTATTTCCCCTCAATGTTCTTGTGGGCTCCTGTATCATCACTACTTGTTCTGCATCTTTTGTGAGCTTAGAATTGAGTGATTAAAGCTTTACTGCACGTCTACTACCGAGTGGCTGGCACTGTCTGATTGCCTCTATTCCTTCGATTTCAGAACGTATCTTGGCACTTGTGTGTTATTGACTGGTGTAGAGGCCTACTAACTTGAAGTTAGCAGCCTCGTTCAGTTCCCATGGATAGTTGTATACTTTGTCTTTCATCATTCCCTTTCCATTTCACTGGACGTTTTTGTATGATTGAAATGTATTGCATTGCTATAGTGATCTTGCAAATGGGTCTGAGTGAGTGATTTTCCCCCTCTTCTTGTCCTAATTGTTACTAAACAAACACCTTCCTTTAAATTATAGTCTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAAGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCCCAAGAGCGGGAAGGGGAGAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAAGAGACGAAGTTTAGTGAGATTTGTACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAACCTGCCGTTCTCTGAGCTTGCTATTGCTATTCACAATGCTGATGCATGTTAAGCTTCCGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCATAGTTTGAAAAGCTGAACAACGCTTACCTCTGCTGAAAACTTGTAATTTTATTGAAAGAAGAGCTAGAAATCAGGAGTTTTTAATGCGAC

mRNA sequence

AAGCAGAAGAATCCTGAAGAAAAGAGCATAATCGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACATGCAGCCTTCATTCCCTTTGGCGACATCAAAGATGTAAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATCTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAAGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCCCAAGAGCGGGAAGGGGAGAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAAGAGACGAAGTTTAGTGAGATTTGTACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAACCTGCCGTTCTCTGAGCTTGCTATTGCTATTCACAATGCTGATGCATGTTAAGCTTCCGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCATAGTTTGAAAAGCTGAACAACGCTTACCTCTGCTGAAAACTTGTAATTTTATTGAAAGAAGAGCTAGAAATCAGGAGTTTTTAATGCGAC

Coding sequence (CDS)

ATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACATGCAGCCTTCATTCCCTTTGGCGACATCAAAGATGTAAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATCTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAAGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCCCAAGAGCGGGAAGGGGAGAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAA

Protein sequence

MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS

Homology

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BLAST of Carg09261 vs. NCBI nr
Match: XP_022961878.1 (peptidyl-prolyl cis-trans isomerase E [Cucurbita moschata] >XP_022997282.1 peptidyl-prolyl cis-trans isomerase E [Cucurbita maxima] >XP_023545633.1 peptidyl-prolyl cis-trans isomerase E [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.0 bits (850), Expect = 1.2e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS
Sbjct: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 171

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BLAST of Carg09261 vs. NCBI nr
Match: XP_022132314.1 (peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 peptidyl-prolyl cis-trans isomerase E [Momordica charantia])

HSP 1 Score: 323.6 bits (828), Expect = 4.2e-85
Identity = 165/169 (97.63%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AENRA MQAAEELHRKK+AQEREGEKEDE+DTKDDPMAKAEAE LRQNS
Sbjct: 124 AENRAAMQAAEELHRKKLAQEREGEKEDEIDTKDDPMAKAEAEVLRQNS 172

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BLAST of Carg09261 vs. NCBI nr
Match: XP_008445441.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo])

HSP 1 Score: 320.5 bits (820), Expect = 3.5e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTKDDPMAKAEAE LRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

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BLAST of Carg09261 vs. NCBI nr
Match: XP_004144165.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 hypothetical protein Csa_6G366550 [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 7.9e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of Carg09261 vs. NCBI nr
Match: OMP01129.1 (hypothetical protein COLO4_12139 [Corchorus olitorius])

HSP 1 Score: 308.9 bits (790), Expect = 1.1e-80
Identity = 155/169 (91.72%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           +AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR+Q
Sbjct: 64  AAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRVQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A EREGEKED+ + KDDPMA+AEAEAL+QNS
Sbjct: 124 AENQAAMRAAEELHRKKMADEREGEKEDDTEMKDDPMARAEAEALKQNS 172

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BLAST of Carg09261 vs. TAIR10
Match: AT1G13690.1 (ATPase E1)

HSP 1 Score: 282.7 bits (722), Expect = 1.5e-76
Identity = 138/165 (83.64%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QA+QKNTLYVGGLA+EVNESILHAAFIPFGDIKDVKTPLDQA QKHRSFGFVTFLE+EDA
Sbjct: 8   QAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDA 67

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPE+IKGGEQGWAA P+WADADTWFERQQQE+E+ ++Q
Sbjct: 68  SAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAHPLWADADTWFERQQQEKEILKMQ 127

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEAL 168
           AEN+A M+ AEELHRKK+A++R+GE E++ DTK+DPMA+AEA+AL
Sbjct: 128 AENKAAMETAEELHRKKLAEDRQGEMEEDTDTKNDPMARAEADAL 172

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BLAST of Carg09261 vs. TAIR10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + L++GG+A  ++E  L  AF  +G++ D +  LD+ T + R FGFVTF   E A
Sbjct: 35  RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94

Query: 63  SAAMDNMDGAELYGRVLTVNYA 85
           S+A+  +DG +L+GRV+ VNYA
Sbjct: 95  SSAIQALDGRDLHGRVVKVNYA 116

[Close]

BLAST of Carg09261 vs. TAIR10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 2   AQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKED 61
           + A   + L++GGL+  V+E  L  AF  FG++ +V+   D+ + + R FGFV F E+ D
Sbjct: 35  SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query: 62  ASAAMDNMDGAELYGRVLTVNYALPERIKGG 93
           A +A D MDG  L GR L +++AL ER++GG
Sbjct: 95  ALSAKDAMDGKGLLGRPLRISFAL-ERVRGG 124

[Close]

BLAST of Carg09261 vs. TAIR10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2)

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10  LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNM 69
           L++GGL+   +++ L  AF  FGD+ D K  +D+ T + R FGFV F ++  A+AA+  M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 70  DGAELYGRVLTVNYA 85
           DG EL GR + VN A
Sbjct: 97  DGKELNGRHIRVNPA 111

[Close]

BLAST of Carg09261 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + ++VGG++   +E  L  AF  +G++ D K  +D+ T + R F FVTF   E+A
Sbjct: 29  RCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA 88

Query: 63  SAAMDNMDGAELYGRVLTVNYA 85
           S AM  +DG +L+GR + VNYA
Sbjct: 89  SNAM-QLDGQDLHGRRIRVNYA 109

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BLAST of Carg09261 vs. Swiss-Prot
Match: sp|A4FV72|PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of Carg09261 vs. Swiss-Prot
Match: sp|Q9QZH3|PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of Carg09261 vs. Swiss-Prot
Match: sp|Q5R723|PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-27
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW--------FERQQQE 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W         E  ++E
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 EEMQRIQAENRATMQAAEE 135
           E  +  +AE +    AA++
Sbjct: 122 EGSEPPKAETQEGEPAAKK 135

[Close]

BLAST of Carg09261 vs. Swiss-Prot
Match: sp|Q9UNP9|PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-26
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW---FERQQQEEEMQR 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W   F  +  EE  + 
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 IQAE-NRATMQAAEELHRK 139
             +E  +A  Q  E + +K
Sbjct: 122 EGSEPPKAETQEGEPIAKK 135

[Close]

BLAST of Carg09261 vs. Swiss-Prot
Match: sp|Q9V3G3|PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp33 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-23
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 7   KNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAM 66
           K T+YVGGLA+EV E +L+ AFIPFGDI D++ P D  +Q+HR F F+ + + EDA+AA+
Sbjct: 5   KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query: 67  DNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQ-----QQEEEMQRI 126
           DNM+ +EL GR + VN A P R+K      + +PIWAD D W ++      Q E E +  
Sbjct: 65  DNMNDSELCGRTIRVNLAKPVRVKED----SFKPIWAD-DDWLQKHAGATLQPEGEPEAE 124

Query: 127 QAENRATMQAAEELHRKKVAQ 143
           + E  +T  A  E   K+  Q
Sbjct: 125 KVETPSTGPAVIEKAEKRNPQ 140

[Close]

BLAST of Carg09261 vs. TrEMBL
Match: tr|A0A1S3BCQ8|A0A1S3BCQ8_CUCME (peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.3e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTKDDPMAKAEAE LRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of Carg09261 vs. TrEMBL
Match: tr|A0A0A0KGY3|A0A0A0KGY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 5.2e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of Carg09261 vs. TrEMBL
Match: tr|A0A1R3K211|A0A1R3K211_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12139 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 7.0e-81
Identity = 155/169 (91.72%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           +AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR+Q
Sbjct: 64  AAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRVQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A EREGEKED+ + KDDPMA+AEAEAL+QNS
Sbjct: 124 AENQAAMRAAEELHRKKMADEREGEKEDDTEMKDDPMARAEAEALKQNS 172

[Close]

BLAST of Carg09261 vs. TrEMBL
Match: tr|A0A067LA00|A0A067LA00_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15732 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 9.2e-81
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 5   VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 64
           VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA
Sbjct: 12  VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 71

Query: 65  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAE 124
           AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQ+EEM+R+QAE
Sbjct: 72  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQQEEMERVQAE 131

Query: 125 NRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           NRA MQAAEELHRKK+A+EREGEKED V+ KDDPMA+AEAE L+QNS
Sbjct: 132 NRAAMQAAEELHRKKMAEEREGEKEDAVEVKDDPMARAEAEVLKQNS 178

[Close]

BLAST of Carg09261 vs. TrEMBL
Match: tr|A0A2I4H8C6|A0A2I4H8C6_9ROSI (peptidyl-prolyl cis-trans isomerase E OS=Juglans regia OX=51240 GN=LOC109014389 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.2e-80
Identity = 155/169 (91.72%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNT+YVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEK+DA
Sbjct: 4   QAVQKNTVYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKDDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           +AAMDNMDGAELYGRVLTVNYALPE+IKGGEQGWAA PIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  AAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAHPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AENRATMQAAE+LHRKK+AQEREGEKEDE+  KDDPMA+AEAE L QN+
Sbjct: 124 AENRATMQAAEDLHRKKLAQEREGEKEDEIAIKDDPMARAEAEVLEQNN 172

The following BLAST results are available for this feature:

BLAST of Carg09261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961878.1	1.2e-87	100.00	peptidyl-prolyl cis-trans isomerase E [Cucurbita moschata] >XP_022997282.1 pepti...	[more]
XP_022132314.1	4.2e-85	97.63	peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 pept...	[more]
XP_008445441.1	3.5e-84	95.32	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo]	[more]
XP_004144165.1	7.9e-84	95.32	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 h...	[more]
OMP01129.1	1.1e-80	91.72	hypothetical protein COLO4_12139 [Corchorus olitorius]	[more]

BLAST of Carg09261 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13690.1	1.5e-76	83.64	ATPase E1	[more]
AT5G61030.1	7.2e-15	41.46	glycine-rich RNA-binding protein 3	[more]
AT3G08000.1	1.6e-14	41.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.1	9.8e-12	44.00	glycine-rich RNA-binding protein 2	[more]
AT1G74230.1	1.7e-11	39.02	glycine-rich RNA-binding protein 5	[more]

BLAST of Carg09261 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A4FV72\|PPIE_BOVIN	5.5e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1	[more]
sp\|Q9QZH3\|PPIE_MOUSE	5.5e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2	[more]
sp\|Q5R723\|PPIE_PONAB	7.9e-27	48.20	Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1	[more]
sp\|Q9UNP9\|PPIE_HUMAN	3.0e-26	48.92	Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1	[more]
sp\|Q9V3G3\|PPIE_DROME	5.3e-23	43.97	Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp3...	[more]

BLAST of Carg09261 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCQ8\|A0A1S3BCQ8_CUCME	2.3e-84	95.32	peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE...	[more]
tr\|A0A0A0KGY3\|A0A0A0KGY3_CUCSA	5.2e-84	95.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV=1	[more]
tr\|A0A1R3K211\|A0A1R3K211_9ROSI	7.0e-81	91.72	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12139 PE=4 SV=1	[more]
tr\|A0A067LA00\|A0A067LA00_JATCU	9.2e-81	92.81	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15732 PE=4 SV=1	[more]
tr\|A0A2I4H8C6\|A0A2I4H8C6_9ROSI	1.2e-80	91.72	peptidyl-prolyl cis-trans isomerase E OS=Juglans regia OX=51240 GN=LOC109014389 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003755	peptidyl-prolyl cis-trans isomerase activity
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034168	PPIE_RRM
IPR024936	Cyclophilin-type_PPIase
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09261-RA	Carg09261-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..171
None	No IPR available	PANTHER	PTHR11071:SF319	SUBFAMILY NOT NAMED	coord: 9..131
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 3.2E-23 score: 93.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 e-value: 3.7E-19 score: 68.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 18.189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..98 e-value: 1.3E-25 score: 91.9
IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 9..131
IPR034168	Peptidyl-prolyl cis-trans isomerase E, RNA recognition motif	CDD	cd12347	RRM_PPIE	coord: 10..82 e-value: 2.59167E-43 score: 139.665
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 6..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09261	Cla022032	Watermelon (97103) v1	carwmB0134
Carg09261	Csa6G366550	Cucumber (Chinese Long) v2	carcuB0158
Carg09261	MELO3C011414	Melon (DHL92) v3.5.1	carmeB0142
Carg09261	ClCG08G010490	Watermelon (Charleston Gray)	carwcgB0138
Carg09261	CSPI06G19740	Wild cucumber (PI 183967)	carcpiB0163
Carg09261	Cucsa.327930	Cucumber (Gy14) v1	carcgyB0175
Carg09261	CmaCh05G004520	Cucurbita maxima (Rimu)	carcmaB0189
Carg09261	CmoCh05G004780	Cucurbita moschata (Rifu)	carcmoB0196
Carg09261	Lsi08G009020	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09261	Cp4.1LG11g03860	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09261	CsGy6G019290	Cucumber (Gy14) v2	carcgybB0156
Carg09261	MELO3C011414.2	Melon (DHL92) v3.6.1	carmedB0146
Carg09261	CsaV3_6G033740	Cucumber (Chinese Long) v3	carcucB0166
Carg09261	Cla97C08G153340	Watermelon (97103) v2	carwmbB0150
Carg09261	Bhi04G000923	Wax gourd	carwgoB0177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09261	Silver-seed gourd	carcarB164
Carg09261	Cucurbita maxima (Rimu)	carcmaB0185
Carg09261	Cucurbita moschata (Rifu)	carcmoB0194
Carg09261	Cucurbita pepo (Zucchini)	carcpeB0207