CmoCh05G004780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G004780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Nucleic acid-binding/nucleotide-binding protein) (Peptidyl-prolyl cis-trans isomerase E)
Location	Cmo_Chr05 : 2228158 .. 2230150 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAAACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTAGTAAGTTCCCCTTTTCCTTAAACCCTAATTATTTTCATCTATTGTTTCTCTGCATTTGTGAAATTCCGCTTGTGTTACATCTCATTGTTGATTGATAACTTCTTGGCTGTGCTCCATTACCTGTTTTGCTCTAATTTCATGCTATGATAGGAGTCCTTGAAAATAGAAATAGAATTTATGCAATCTATTTGGTTGCATTGCATACAATAGTGGTTCGTTGGTTATATTCTAAATCTTCAATTTCATTCTTACAATTTCAAATGTTTTGTTAGTGCAATAAAAAATTTCAGTCTAGCCGATTTCTAATTTGATTTCAAATCAAATATATGTATCTGAAACTGATTTATATGCAAAATTCTGTGAAGGAACCAAAGCTAACAATTTAAAAAGTAAACTAAAATTTGGTTCATGTGGAAGTTCTGGACCAAAATTAGATTTAAACAGCTTATCATTTTCTGGTGCCGAAGTTTAATCCTTAGGACAAGTTTTGGAAATTGTTTTAAGATTTGGACTCGGTCATTTTAGGATTTATTTAGATTATGTTTGTGTATCTAAATCTCCTGCCCTGGTTGCTAATTACAAGTATTGCAATCTATGGCATTAGCATGCTGATAGTTTCCTCCATTCCTGCCAATATGAACCTAGCTTAGTAGTTAAAGCATCTATGAAGTTTGAGGTTCAAATTCTCGCAGCGTGTCGTATAAAACAAAAATATGTTCCATCTCCTTGACTGTTCTTTGATTTCTATTTCCCCTCAATGTTCTTGTGGGCTCCTGTATCATCACTACTTGTTCTGCATCTTTTGTGAGCTTAGAATTGAGTGATTAAAGCTTTACTGCACGTCTACTACCGAGTGGCTGGCACTGTCTGATTGCCTCAACTCCTTCGATTTTAGAACGTATCTTGGCACTTGTGTGTTATTGACTGGTGTAGAGGCCTACTAACTTGAAGTTAGCAGCCTCGTTCAGTTCCCATGGATAGTTGTATACTTTGTCTTTCATCATTCCCTTTCCATTTCACTGGACGTTTTTGTATGATTGAAATGTGTTGCATTGCTATAGTGATCTTGCAAATGGGTCTGAATGAGTGATTTTCCCCCTCTTCTTGTCCTAATTGTTACTAAACAAACGCCTTCCTTTAAATTATAGTTTGGGCCGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCTCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAAGAGACGAAGTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAACCTGCCGTTCGCTGAGCTTGCTATTGCTATTCACAATGCTGATATGCATGTTAAGCTTACGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCTTAGTTTGAAAAGCTGAACAACGCTTACCTTTGATGAAAACTTGTAATTTTATGGAAAGAAGATCTAGAAATCAGGAGTTTTTAATGCGACAGCATTGTTGTTTTAGTTCCC

mRNA sequence

AAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAAACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCCGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCTCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAAGAGACGAAGTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAACCTGCCGTTCGCTGAGCTTGCTATTGCTATTCACAATGCTGATATGCATGTTAAGCTTACGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCTTAGTTTGAAAAGCTGAACAACGCTTACCTTTGATGAAAACTTGTAATTTTATGGAAAGAAGATCTAGAAATCAGGAGTTTTTAATGCGACAGCATTGTTGTTTTAGTTCCC

Coding sequence (CDS)

ATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAAACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCCGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCTCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAA

Homology

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BLAST of CmoCh05G004780 vs. Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

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BLAST of CmoCh05G004780 vs. Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

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BLAST of CmoCh05G004780 vs. Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.8e-27
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW--------FERQQQE 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W         E  ++E
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 EEMQRIQAENRATMQAAEE 135
           E  +  +AE +    AA++
Sbjct: 122 EGSEPPKAETQEGEPAAKK 135

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BLAST of CmoCh05G004780 vs. Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW---FERQQQEEEMQR 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W   F  +  EE  + 
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 IQAE-NRATMQAAEELHRK 139
             +E  +A  Q  E + +K
Sbjct: 122 EGSEPPKAETQEGEPIAKK 135

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BLAST of CmoCh05G004780 vs. Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.2e-23
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 1


Query: 7   KNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAM 66
           K T+YVGGLA+EV E +L+ AFIPFGDI D++ P D  +Q+HR F F+ + + EDA+AA+
Sbjct: 5   KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query: 67  DNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQ-----QQEEEMQRI 126
           DNM+ +EL GR + VN A P R+K      + +PIWAD D W ++      Q E E +  
Sbjct: 65  DNMNDSELCGRTIRVNLAKPVRVKED----SFKPIWAD-DDWLQKHAGATLQPEGEPEAE 124

Query: 127 QAENRATMQAAEELHRKKVAQ 143
           + E  +T  A  E   K+  Q
Sbjct: 125 KVETPSTGPAVIEKAEKRNPQ 140

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BLAST of CmoCh05G004780 vs. TrEMBL
Match: A0A0A0KGY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366550 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.8e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

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BLAST of CmoCh05G004780 vs. TrEMBL
Match: A0A067LA00_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15732 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.0e-81
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 5   VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 64
           VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA
Sbjct: 12  VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 71

Query: 65  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAE 124
           AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQ+EEM+R+QAE
Sbjct: 72  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQQEEMERVQAE 131

Query: 125 NRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           NRA MQAAEELHRKK+A+EREGEKED V+ KDDPMA+AEAE L+QNS
Sbjct: 132 NRAAMQAAEELHRKKMAEEREGEKEDAVEVKDDPMARAEAEVLKQNS 178

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BLAST of CmoCh05G004780 vs. TrEMBL
Match: A0A061DK54_THECC (ATPase E1 OS=Theobroma cacao GN=TCM_001641 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-80
Identity = 155/169 (91.72%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A+EREGEKED+ + KDDPMA AEAE L+QN+
Sbjct: 124 AENQAAMRAAEELHRKKMAEEREGEKEDDTEMKDDPMAMAEAEVLKQNN 172

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BLAST of CmoCh05G004780 vs. TrEMBL
Match: D7U1R3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00560 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.5e-80
Identity = 155/171 (90.64%), Postives = 164/171 (95.91%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           M Q VQKNTLYVGGLAEEVNESILH+AFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MNQPVQKNTLYVGGLAEEVNESILHSAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DA+AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           IQAENRA MQAAEELHRKK+AQEREGEK++EV+ KDDPMA+ EAE L Q++
Sbjct: 121 IQAENRAAMQAAEELHRKKMAQEREGEKDEEVEGKDDPMARVEAEVLNQSN 171

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BLAST of CmoCh05G004780 vs. TrEMBL
Match: A0A0D2RAE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G060600 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 5.5e-80
Identity = 153/169 (90.53%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNETILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           +AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  AAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A+ER+GEKEDE + KDDPMA+AEAE  +QN+
Sbjct: 124 AENQAAMRAAEELHRKKMAEERQGEKEDETEMKDDPMARAEAEVSKQNN 172

[Close]

BLAST of CmoCh05G004780 vs. TAIR10
Match: AT1G13690.1 (AT1G13690.1 ATPase E1)

HSP 1 Score: 282.7 bits (722), Expect = 1.5e-76
Identity = 138/165 (83.64%), Postives = 158/165 (95.76%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QA+QKNTLYVGGLA+EVNESILHAAFIPFGDIKDVKTPLDQA QKHRSFGFVTFLE+EDA
Sbjct: 8   QAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDA 67

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPE+IKGGEQGWAA P+WADADTWFERQQQE+E+ ++Q
Sbjct: 68  SAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAHPLWADADTWFERQQQEKEILKMQ 127

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEAL 168
           AEN+A M+ AEELHRKK+A++R+GE E++ DTK+DPMA+AEA+AL
Sbjct: 128 AENKAAMETAEELHRKKLAEDRQGEMEEDTDTKNDPMARAEADAL 172

[Close]

BLAST of CmoCh05G004780 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + L++GG+A  ++E  L  AF  +G++ D +  LD+ T + R FGFVTF   E A
Sbjct: 35  RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQG 96
           S+A+  +DG +L+GRV+ VNYA  +R  GG  G
Sbjct: 95  SSAIQALDGRDLHGRVVKVNYA-NDRTSGGGFG 126

[Close]

BLAST of CmoCh05G004780 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 2   AQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKED 61
           + A   + L++GGL+  V+E  L  AF  FG++ +V+   D+ + + R FGFV F E+ D
Sbjct: 35  SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query: 62  ASAAMDNMDGAELYGRVLTVNYALPERIKGG 93
           A +A D MDG  L GR L +++AL ER++GG
Sbjct: 95  ALSAKDAMDGKGLLGRPLRISFAL-ERVRGG 124

[Close]

BLAST of CmoCh05G004780 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-12
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 11 YVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMD 70
          +VGGLA   N+  L   F  FGD+ D K   D+ + + R FGFVTF +++    A++ M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 71 GAELYGRVLTVNYALPERIKGGEQG 96
          G EL GRV+TVN A      GG  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGG 93

[Close]

BLAST of CmoCh05G004780 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 10  LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNM 69
           L++GGL+   +++ L  AF  FGD+ D K  +D+ T + R FGFV F ++  A+AA+  M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 70  DGAELYGRVLTVNYA 85
           DG EL GR + VN A
Sbjct: 97  DGKELNGRHIRVNPA 111

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: gi|659089315|ref|XP_008445441.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo])

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTKDDPMAKAEAE LRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: gi|449452837|ref|XP_004144165.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 4.0e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: gi|1009154457|ref|XP_015895181.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Ziziphus jujuba])

HSP 1 Score: 312.0 bits (798), Expect = 6.5e-82
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLE+EDA
Sbjct: 6   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDA 65

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 66  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 125

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQN 171
           AENRA MQ AEELHRKK+AQEREGEKEDE + KDDPMA+AEAE L+QN
Sbjct: 126 AENRAAMQEAEELHRKKMAQEREGEKEDETEVKDDPMARAEAEVLKQN 173

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: gi|802568590|ref|XP_012067811.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Jatropha curcas])

HSP 1 Score: 308.5 bits (789), Expect = 7.1e-81
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 5   VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 64
           VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA
Sbjct: 12  VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 71

Query: 65  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAE 124
           AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQ+EEM+R+QAE
Sbjct: 72  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQQEEMERVQAE 131

Query: 125 NRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           NRA MQAAEELHRKK+A+EREGEKED V+ KDDPMA+AEAE L+QNS
Sbjct: 132 NRAAMQAAEELHRKKMAEEREGEKEDAVEVKDDPMARAEAEVLKQNS 178

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: gi|590709608|ref|XP_007048600.1| (ATPase E1 [Theobroma cacao])

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80
Identity = 155/169 (91.72%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A+EREGEKED+ + KDDPMA AEAE L+QN+
Sbjct: 124 AENQAAMRAAEELHRKKMAEEREGEKEDDTEMKDDPMAMAEAEVLKQNN 172

The following BLAST results are available for this feature:

BLAST of CmoCh05G004780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPIE_MOUSE	5.4e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=1 SV=2	[more]
PPIE_BOVIN	5.4e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1	[more]
PPIE_PONAB	7.8e-27	48.20	Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1	[more]
PPIE_HUMAN	2.9e-26	48.92	Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1	[more]
PPIE_DROME	5.2e-23	43.97	Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 S...	[more]

BLAST of CmoCh05G004780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGY3_CUCSA	2.8e-84	95.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366550 PE=4 SV=1	[more]
A0A067LA00_JATCU	5.0e-81	92.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15732 PE=4 SV=1	[more]
A0A061DK54_THECC	1.1e-80	91.72	ATPase E1 OS=Theobroma cacao GN=TCM_001641 PE=4 SV=1	[more]
D7U1R3_VITVI	2.5e-80	90.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00560 PE=4 SV=...	[more]
A0A0D2RAE8_GOSRA	5.5e-80	90.53	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G060600 PE=4 SV=1	[more]

BLAST of CmoCh05G004780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13690.1	1.5e-76	83.64	ATPase E1	[more]
AT5G61030.1	1.5e-15	40.86	glycine-rich RNA-binding protein 3	[more]
AT3G08000.1	1.6e-14	41.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G39260.1	7.5e-12	42.35	cold, circadian rhythm, and RNA binding 1	[more]
AT4G13850.1	9.8e-12	44.00	glycine-rich RNA-binding protein 2	[more]

BLAST of CmoCh05G004780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089315\|ref\|XP_008445441.1\|	1.8e-84	95.32	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo]	[more]
gi\|449452837\|ref\|XP_004144165.1\|	4.0e-84	95.32	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus]	[more]
gi\|1009154457\|ref\|XP_015895181.1\|	6.5e-82	94.05	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Ziziphus jujuba]	[more]
gi\|802568590\|ref\|XP_012067811.1\|	7.1e-81	92.81	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Jatropha curcas]	[more]
gi\|590709608\|ref\|XP_007048600.1\|	1.6e-80	91.72	ATPase E1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR024936	Cyclophilin-type_PPIase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004780.1	CmoCh05G004780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 score: 3.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 score: 3.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 8..86 score: 18
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..94 score: 3.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 6..95 score: 1.63
IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 3..74 score: 1.8
None	No IPR available	unknown	Coil	Coil	coord: 111..138 scor
None	No IPR available	PANTHER	PTHR11071:SF274	SUBFAMILY NOT NAMED	coord: 3..74 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G004780	Cucsa.327930	Cucumber (Gy14) v1	cgycmoB0907
CmoCh05G004780	CmaCh05G004520	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G004780	Cla022032	Watermelon (97103) v1	cmowmB746
CmoCh05G004780	Csa6G366550	Cucumber (Chinese Long) v2	cmocuB796
CmoCh05G004780	MELO3C011414	Melon (DHL92) v3.5.1	cmomeB715
CmoCh05G004780	ClCG08G010490	Watermelon (Charleston Gray)	cmowcgB713
CmoCh05G004780	CSPI06G19740	Wild cucumber (PI 183967)	cmocpiB800
CmoCh05G004780	Lsi08G009020	Bottle gourd (USVL1VR-Ls)	cmolsiB728
CmoCh05G004780	MELO3C011414.2	Melon (DHL92) v3.6.1	cmomedB812
CmoCh05G004780	CsaV3_6G033740	Cucumber (Chinese Long) v3	cmocucB0937
CmoCh05G004780	Cla97C08G153340	Watermelon (97103) v2	cmowmbB800
CmoCh05G004780	Bhi04G000923	Wax gourd	cmowgoB0941
CmoCh05G004780	CsGy6G019290	Cucumber (Gy14) v2	cgybcmoB825
CmoCh05G004780	Carg09261	Silver-seed gourd	carcmoB0196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G004780	Silver-seed gourd	carcmoB0894
CmoCh05G004780	Wax gourd	cmowgoB0951
CmoCh05G004780	Cucurbita moschata (Rifu)	cmocmoB150
CmoCh05G004780	Cucurbita maxima (Rimu)	cmacmoB192
CmoCh05G004780	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G004780	Cucurbita pepo (Zucchini)	cmocpeB744