CsaV3_6G017420 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G017420
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 12923294 .. 12924139 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACCCCAATTTTCTCTTCTCCTCAAACAATCATCTCTCGCCAAACCATTTTTTTTTTAAATTATAATAAAGTAAAAGAAACACTGCAAAGTTAAAAATAAAATGACGAAGAAGATGATGGCAGTGTTTCTATTGTGTATTCTGGTGCTGGCTGCACTTGAAATCTCCGCTGTTGCCGCCGGCGAGGAGGCTAACAATATCCCGAGGAAAAAGTCACTTTTTAGCCGCATCTTCGGTAAGTTCTATCACTTTTTTTTATTCTGAACTTTTTGGAAAGGTAACTTAAAAACATAGTGTGGTTTTCATCATCGTTGTTATTATTATTTTGTGTTCAAGAACGTATGAAATTTAAATCAAATAGATCAGTTTTCTTGGTGTTGATTCTTTTATAAAAAAAATGTTAGATTGTAACAAAGAACTATTCAATAGCCATCTTTCTTGATTGATTTATTTTGGTTGTGTGTGTTTTTTTGCAGATAAATTGGGCGTCGATATGCCCAAAAATAATTGATAATTGAGGATGAACAAGAGAAGAGTTCTCAAGAATGATGATGGGATTGATGTAAATGGTGATGTATGATTTTTTTAATGATTTTTTTTCCTTTATGAGAGGAATTTCTGAATGACCCTCCTTTGCCTTCTTTCATTTTTATTTTGTGATCTCTTTGTTTAATTAGTGATAATAGATAAAGAAAAAAAAGTTGGGTTTTTGCCTTTTTGGTAATGTTTGGGTCTGTTTTTTTCTCCCATGATTGTTCTTAGACCAACAAAATTCATTTGATTTATTTAACTGCACTGAAAACATTCAACTTTTCGATATTGCATTGATAATTCTACATCCAAAC

mRNA sequence

ATGACGAAGAAGATGATGGCAGTGTTTCTATTGTGTATTCTGGTGCTGGCTGCACTTGAAATCTCCGCTGTTGCCGCCGGCGAGGAGGCTAACAATATCCCGAGGAAAAAGTCACTTTTTAGCCGCATCTTCGATAAATTGGGCGTCGATATGCCCAAAAATAATTGA

Coding sequence (CDS)

ATGACGAAGAAGATGATGGCAGTGTTTCTATTGTGTATTCTGGTGCTGGCTGCACTTGAAATCTCCGCTGTTGCCGCCGGCGAGGAGGCTAACAATATCCCGAGGAAAAAGTCACTTTTTAGCCGCATCTTCGATAAATTGGGCGTCGATATGCCCAAAAATAATTGA

Protein sequence

MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN
Homology
[Close]
BLAST of CsaV3_6G017420 vs. NCBI nr
Match: KGN47207.1 (hypothetical protein Csa_6G200320 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 56
          MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN
Sbjct: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 55

[Close]
BLAST of CsaV3_6G017420 vs. TrEMBL
Match: tr|A0A0A0KFK4|A0A0A0KFK4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G200320 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 56
          MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN
Sbjct: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 55

The following BLAST results are available for this feature:
BLAST of CsaV3_6G017420 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47207.15.9e-20100.00hypothetical protein Csa_6G200320 [Cucumis sativus][more]
BLAST of CsaV3_6G017420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G017420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G017420 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KFK4|A0A0A0KFK4_CUCSA3.9e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G200320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G017420.1CsaV3_6G017420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G017420CSPI06G14950Wild cucumber (PI 183967)cpicucB364
CsaV3_6G017420Cla009328Watermelon (97103) v1cucwmB566
CsaV3_6G017420MELO3C021358Melon (DHL92) v3.5.1cucmeB450
CsaV3_6G017420MELO3C021358.2Melon (DHL92) v3.6.1cucmedB441
CsaV3_6G017420Cla97C06G114870Watermelon (97103) v2cucwmbB489
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G017420Cucurbita moschata (Rifu)cmocucB0986
CsaV3_6G017420Cucurbita pepo (Zucchini)cpecucB0783
CsaV3_6G017420Cucurbita pepo (Zucchini)cpecucB1073
CsaV3_6G017420Cucumber (Gy14) v2cgybcucB298
CsaV3_6G017420Cucurbita maxima (Rimu)cmacucB0999