CsaV3_6G017420.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G017420.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 12923294 .. 12924139 (-)
Sequence length	168

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCCAATTTTCTCTTCTCCTCAAACAATCATCTCTCGCCAAACCATTTTTTTTTTAAATTATAATAAAGTAAAAGAAACACTGCAAAGTTAAAAATAAAATGACGAAGAAGATGATGGCAGTGTTTCTATTGTGTATTCTGGTGCTGGCTGCACTTGAAATCTCCGCTGTTGCCGCCGGCGAGGAGGCTAACAATATCCCGAGGAAAAAGTCACTTTTTAGCCGCATCTTCGGTAAGTTCTATCACTTTTTTTTATTCTGAACTTTTTGGAAAGGTAACTTAAAAACATAGTGTGGTTTTCATCATCGTTGTTATTATTATTTTGTGTTCAAGAACGTATGAAATTTAAATCAAATAGATCAGTTTTCTTGGTGTTGATTCTTTTATAAAAAAAATGTTAGATTGTAACAAAGAACTATTCAATAGCCATCTTTCTTGATTGATTTATTTTGGTTGTGTGTGTTTTTTTGCAGATAAATTGGGCGTCGATATGCCCAAAAATAATTGATAATTGAGGATGAACAAGAGAAGAGTTCTCAAGAATGATGATGGGATTGATGTAAATGGTGATGTATGATTTTTTTAATGATTTTTTTTCCTTTATGAGAGGAATTTCTGAATGACCCTCCTTTGCCTTCTTTCATTTTTATTTTGTGATCTCTTTGTTTAATTAGTGATAATAGATAAAGAAAAAAAAGTTGGGTTTTTGCCTTTTTGGTAATGTTTGGGTCTGTTTTTTTCTCCCATGATTGTTCTTAGACCAACAAAATTCATTTGATTTATTTAACTGCACTGAAAACATTCAACTTTTCGATATTGCATTGATAATTCTACATCCAAAC

mRNA sequence

ATGACGAAGAAGATGATGGCAGTGTTTCTATTGTGTATTCTGGTGCTGGCTGCACTTGAAATCTCCGCTGTTGCCGCCGGCGAGGAGGCTAACAATATCCCGAGGAAAAAGTCACTTTTTAGCCGCATCTTCGATAAATTGGGCGTCGATATGCCCAAAAATAATTGA

Coding sequence (CDS)

ATGACGAAGAAGATGATGGCAGTGTTTCTATTGTGTATTCTGGTGCTGGCTGCACTTGAAATCTCCGCTGTTGCCGCCGGCGAGGAGGCTAACAATATCCCGAGGAAAAAGTCACTTTTTAGCCGCATCTTCGATAAATTGGGCGTCGATATGCCCAAAAATAATTGA

Protein sequence

MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN

Homology

[Close]

BLAST of CsaV3_6G017420.1 vs. NCBI nr
Match: KGN47207.1 (hypothetical protein Csa_6G200320 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 56
          MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN
Sbjct: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 55

[Close]

BLAST of CsaV3_6G017420.1 vs. TrEMBL
Match: tr|A0A0A0KFK4|A0A0A0KFK4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G200320 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 56
          MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN
Sbjct: 1  MTKKMMAVFLLCILVLAALEISAVAAGEEANNIPRKKSLFSRIFDKLGVDMPKNN 55

The following BLAST results are available for this feature:

BLAST of CsaV3_6G017420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47207.1	5.9e-20	100.00	hypothetical protein Csa_6G200320 [Cucumis sativus]	[more]

BLAST of CsaV3_6G017420.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G017420.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G017420.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFK4\|A0A0A0KFK4_CUCSA	3.9e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G200320 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G017420	CsaV3_6G017420	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G017420.1.cds2	CsaV3_6G017420.1.cds2	CDS
CsaV3_6G017420.1.cds1	CsaV3_6G017420.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G017420.1.exon2	CsaV3_6G017420.1.exon2	exon
CsaV3_6G017420.1.exon1	CsaV3_6G017420.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G017420.1	CsaV3_6G017420.1-protein	polypeptide