CsaV3_6G017240 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G017240
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 12792053 .. 12792505 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGTTTGGGTGTAAGCGTGGGGGGTGGATACATATCAAGAATAATCTTCGAACATGGTCAAAAAGGTTCATCCTCTACTGATTCTTTCCCTTCTTCTTCTTCTAATGGTACCTCTGTCTCTCCAAATTCTTTTTATGATAATCAAACCCCACCAATTTCCACTTATCAAGACGCTGCTCCAGCATCCACGTCGTCGTTTTACTATGACGGTGGTTCACGATTGACCACATTTTCTGACACCGATACCTTGGTCGCCTCTAACTTGGCGACGTCGTCGTTTTACAAAGATGGCTTACCATTGACCGGTTTTCCACACAATGCTACCTCGGCGTCTAATGATTCCTCTGATGCACCCATCGACGATGTCTACCGTACGACTTCTTACGATGGTGATTCCACTACCCTACTTGATTCTGTGGTCGATGCTTTGTTCTCCTCTTTTTATTGA

mRNA sequence

ATGACGGGTTTGGGTGTAAGCGTGGGGGGTGGATACATATCAAGAATAATCTTCGAACATGGTCAAAAAGGTTCATCCTCTACTGATTCTTTCCCTTCTTCTTCTTCTAATGGTACCTCTGTCTCTCCAAATTCTTTTTATGATAATCAAACCCCACCAATTTCCACTTATCAAGACGCTGCTCCAGCATCCACGTCGTCGTTTTACTATGACGGTGGTTCACGATTGACCACATTTTCTGACACCGATACCTTGGTCGCCTCTAACTTGGCGACGTCGTCGTTTTACAAAGATGGCTTACCATTGACCGGTTTTCCACACAATGCTACCTCGGCGTCTAATGATTCCTCTGATGCACCCATCGACGATGTCTACCGTACGACTTCTTACGATGGTGATTCCACTACCCTACTTGATTCTGTGGTCGATGCTTTGTTCTCCTCTTTTTATTGA

Coding sequence (CDS)

ATGACGGGTTTGGGTGTAAGCGTGGGGGGTGGATACATATCAAGAATAATCTTCGAACATGGTCAAAAAGGTTCATCCTCTACTGATTCTTTCCCTTCTTCTTCTTCTAATGGTACCTCTGTCTCTCCAAATTCTTTTTATGATAATCAAACCCCACCAATTTCCACTTATCAAGACGCTGCTCCAGCATCCACGTCGTCGTTTTACTATGACGGTGGTTCACGATTGACCACATTTTCTGACACCGATACCTTGGTCGCCTCTAACTTGGCGACGTCGTCGTTTTACAAAGATGGCTTACCATTGACCGGTTTTCCACACAATGCTACCTCGGCGTCTAATGATTCCTCTGATGCACCCATCGACGATGTCTACCGTACGACTTCTTACGATGGTGATTCCACTACCCTACTTGATTCTGTGGTCGATGCTTTGTTCTCCTCTTTTTATTGA

Protein sequence

MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDAAPASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAPIDDVYRTTSYDGDSTTLLDSVVDALFSSFY

Homology

[Close]

BLAST of CsaV3_6G017240 vs. NCBI nr
Match: KGN47185.1 (hypothetical protein Csa_6G194690 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 1.7e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60
           MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA
Sbjct: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60

Query: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120
           APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP
Sbjct: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120

Query: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 151
           IDDVYRTTSYDGDSTTLLDSVVDALFSSFY
Sbjct: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 150

[Close]

BLAST of CsaV3_6G017240 vs. NCBI nr
Match: XP_008458456.1 (PREDICTED: uncharacterized protein LOC103497858 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 3.5e-11
Identity = 70/185 (37.84%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60
           M GL VSVGGGY+S++IFEHG KGSSST+S  SSS N          DNQ  PIST Q  
Sbjct: 183 MAGLLVSVGGGYLSKLIFEHGGKGSSSTNSLSSSSDN---------VDNQATPISTGQGP 242

Query: 61  APAS------------------------------------TSSFYYDGGSRLTTFSDTDT 120
           A A+                                       FY++G    +  SDTD 
Sbjct: 243 ATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFYHNG----SPVSDTDI 302

Query: 121 LVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAPIDDVYRTTSYDGDSTTLLDSVVDA 150
            VA +LA SSFY+D  PLT  P N          AP+++         D+T LL S+VD 
Sbjct: 303 FVAPDLA-SSFYEDDSPLTNLPWN----------APLEE---------DNTDLLHSMVDG 334

[Close]

BLAST of CsaV3_6G017240 vs. TrEMBL
Match: tr|A0A0A0KBV2|A0A0A0KBV2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194690 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.1e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60
           MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA
Sbjct: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60

Query: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120
           APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP
Sbjct: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120

Query: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 151
           IDDVYRTTSYDGDSTTLLDSVVDALFSSFY
Sbjct: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 150

[Close]

BLAST of CsaV3_6G017240 vs. TrEMBL
Match: tr|A0A1S3C7E1|A0A1S3C7E1_CUCME (uncharacterized protein LOC103497858 OS=Cucumis melo OX=3656 GN=LOC103497858 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 70/185 (37.84%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60
           M GL VSVGGGY+S++IFEHG KGSSST+S  SSS N          DNQ  PIST Q  
Sbjct: 183 MAGLLVSVGGGYLSKLIFEHGGKGSSSTNSLSSSSDN---------VDNQATPISTGQGP 242

Query: 61  APAS------------------------------------TSSFYYDGGSRLTTFSDTDT 120
           A A+                                       FY++G    +  SDTD 
Sbjct: 243 ATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFYHNG----SPVSDTDI 302

Query: 121 LVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAPIDDVYRTTSYDGDSTTLLDSVVDA 150
            VA +LA SSFY+D  PLT  P N          AP+++         D+T LL S+VD 
Sbjct: 303 FVAPDLA-SSFYEDDSPLTNLPWN----------APLEE---------DNTDLLHSMVDG 334

The following BLAST results are available for this feature:

BLAST of CsaV3_6G017240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47185.1	1.7e-74	100.00	hypothetical protein Csa_6G194690 [Cucumis sativus]	[more]
XP_008458456.1	3.5e-11	37.84	PREDICTED: uncharacterized protein LOC103497858 [Cucumis melo]	[more]

BLAST of CsaV3_6G017240 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G017240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G017240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBV2\|A0A0A0KBV2_CUCSA	1.1e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194690 PE=4 SV=1	[more]
tr\|A0A1S3C7E1\|A0A1S3C7E1_CUCME	2.3e-11	37.84	uncharacterized protein LOC103497858 OS=Cucumis melo OX=3656 GN=LOC103497858 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G017240.1	CsaV3_6G017240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G017240	CSPI06G14790	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G017240	MELO3C021337	Melon (DHL92) v3.5.1	cucmeB450
CsaV3_6G017240	MELO3C021337.2	Melon (DHL92) v3.6.1	cucmedB441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G017240	Wax gourd	cucwgoB554
CsaV3_6G017240	Wax gourd	cucwgoB577
CsaV3_6G017240	Cucumber (Chinese Long) v3	cuccucB150
CsaV3_6G017240	Silver-seed gourd	carcucB0088
CsaV3_6G017240	Silver-seed gourd	carcucB0743
CsaV3_6G017240	Cucumber (Gy14) v2	cgybcucB153
CsaV3_6G017240	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G017240	Cucumber (Gy14) v1	cgycucB275
CsaV3_6G017240	Cucumber (Gy14) v1	cgycucB397
CsaV3_6G017240	Cucurbita maxima (Rimu)	cmacucB0453
CsaV3_6G017240	Cucurbita maxima (Rimu)	cmacucB0999
CsaV3_6G017240	Cucurbita maxima (Rimu)	cmacucB1076
CsaV3_6G017240	Cucurbita moschata (Rifu)	cmocucB0306
CsaV3_6G017240	Cucurbita moschata (Rifu)	cmocucB0446
CsaV3_6G017240	Cucurbita moschata (Rifu)	cmocucB0986
CsaV3_6G017240	Cucurbita moschata (Rifu)	cmocucB1058
CsaV3_6G017240	Cucurbita pepo (Zucchini)	cpecucB0177
CsaV3_6G017240	Cucurbita pepo (Zucchini)	cpecucB0407
CsaV3_6G017240	Cucurbita pepo (Zucchini)	cpecucB0783
CsaV3_6G017240	Cucurbita pepo (Zucchini)	cpecucB1073
CsaV3_6G017240	Wild cucumber (PI 183967)	cpicucB188
CsaV3_6G017240	Bottle gourd (USVL1VR-Ls)	cuclsiB426
CsaV3_6G017240	Bottle gourd (USVL1VR-Ls)	cuclsiB494
CsaV3_6G017240	Melon (DHL92) v3.5.1	cucmeB510
CsaV3_6G017240	Melon (DHL92) v3.6.1	cucmedB498
CsaV3_6G017240	Watermelon (Charleston Gray)	cucwcgB499
CsaV3_6G017240	Watermelon (97103) v1	cucwmB523
CsaV3_6G017240	Watermelon (97103) v1	cucwmB566
CsaV3_6G017240	Watermelon (97103) v2	cucwmbB485
CsaV3_6G017240	Watermelon (97103) v2	cucwmbB489