CSPI06G14790 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G14790
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 12884190 .. 12884642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGTTTGGGTGTAAGCGTGGGGGGTGGATACATATCAAGAATAATCTTCCAACATGGTCAAAAAGGTTCATCCTCTACTGATTCTTTCCCTTCTTCTTCTTCTAATGGTACCTCTGTCTCTCCAAATTCTTTTTATGATAATCAAACCCCACCAATTTCCACTTATCAAGACGCTGCTCCAGCATCCACGTCGTCGTTTTACTATGACGGTGGTTCACGATTGACCACATTTTCTGACACCGATACCTTGGTCGCCTCTAACTTGGCGACGTCGTCGTTTTACAAAGATGGCTTACCATTGACCGGTTTTCCACACAATGCTACCTCGGCGTCTAATGATTCCTCTGATGCACCCATCGACGATGTCTACCGTACGACTTCTTACGATGGTGATTCCACTACCCTACTTGATTCTGTGGTCGATGCTTTGTTCTCCTCTTTTTATTGA

mRNA sequence

ATGACGGGTTTGGGTGTAAGCGTGGGGGGTGGATACATATCAAGAATAATCTTCCAACATGGTCAAAAAGGTTCATCCTCTACTGATTCTTTCCCTTCTTCTTCTTCTAATGGTACCTCTGTCTCTCCAAATTCTTTTTATGATAATCAAACCCCACCAATTTCCACTTATCAAGACGCTGCTCCAGCATCCACGTCGTCGTTTTACTATGACGGTGGTTCACGATTGACCACATTTTCTGACACCGATACCTTGGTCGCCTCTAACTTGGCGACGTCGTCGTTTTACAAAGATGGCTTACCATTGACCGGTTTTCCACACAATGCTACCTCGGCGTCTAATGATTCCTCTGATGCACCCATCGACGATGTCTACCGTACGACTTCTTACGATGGTGATTCCACTACCCTACTTGATTCTGTGGTCGATGCTTTGTTCTCCTCTTTTTATTGA

Coding sequence (CDS)

ATGACGGGTTTGGGTGTAAGCGTGGGGGGTGGATACATATCAAGAATAATCTTCCAACATGGTCAAAAAGGTTCATCCTCTACTGATTCTTTCCCTTCTTCTTCTTCTAATGGTACCTCTGTCTCTCCAAATTCTTTTTATGATAATCAAACCCCACCAATTTCCACTTATCAAGACGCTGCTCCAGCATCCACGTCGTCGTTTTACTATGACGGTGGTTCACGATTGACCACATTTTCTGACACCGATACCTTGGTCGCCTCTAACTTGGCGACGTCGTCGTTTTACAAAGATGGCTTACCATTGACCGGTTTTCCACACAATGCTACCTCGGCGTCTAATGATTCCTCTGATGCACCCATCGACGATGTCTACCGTACGACTTCTTACGATGGTGATTCCACTACCCTACTTGATTCTGTGGTCGATGCTTTGTTCTCCTCTTTTTATTGA

Homology

[Close]

BLAST of CSPI06G14790 vs. TrEMBL
Match: A0A0A0KBV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194690 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-74
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MTGLGVSVGGGYISRIIFQHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60
           MTGLGVSVGGGYISRIIF+HGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA
Sbjct: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60

Query: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120
           APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP
Sbjct: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120

Query: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 151
           IDDVYRTTSYDGDSTTLLDSVVDALFSSFY
Sbjct: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 150

[Close]

BLAST of CSPI06G14790 vs. NCBI nr
Match: gi|700191981|gb|KGN47185.1| (hypothetical protein Csa_6G194690 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 2.0e-74
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MTGLGVSVGGGYISRIIFQHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60
           MTGLGVSVGGGYISRIIF+HGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA
Sbjct: 1   MTGLGVSVGGGYISRIIFEHGQKGSSSTDSFPSSSSNGTSVSPNSFYDNQTPPISTYQDA 60

Query: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120
           APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP
Sbjct: 61  APASTSSFYYDGGSRLTTFSDTDTLVASNLATSSFYKDGLPLTGFPHNATSASNDSSDAP 120

Query: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 151
           IDDVYRTTSYDGDSTTLLDSVVDALFSSFY
Sbjct: 121 IDDVYRTTSYDGDSTTLLDSVVDALFSSFY 150

[Close]

BLAST of CSPI06G14790 vs. NCBI nr
Match: gi|659117166|ref|XP_008458456.1| (PREDICTED: uncharacterized protein LOC103497858 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 71/176 (40.34%), Postives = 91/176 (51.70%), Query Frame = 1


Query: 1   MTGLGVSVGGGYISRIIFQHGQKGSSSTDSFPSSSSN---------------------GT 60
           M GL VSVGGGY+S++IF+HG KGSSST+S  SSS N                      T
Sbjct: 183 MAGLLVSVGGGYLSKLIFEHGGKGSSSTNSLSSSSDNVDNQATPISTGQGPATATIDQAT 242

Query: 61  SVSPNSFYDNQT----PPISTYQDAAPAS--TSSFYYDGGSRLTTFSDTDTLVASNLATS 120
            +S   +    T     PIST QDAA  +   +SFY++G    +  SDTD  VA +LA S
Sbjct: 243 LISTGEYAATDTIDPATPISTVQDAAAGTFDLASFYHNG----SPVSDTDIFVAPDLA-S 302

Query: 121 SFYKDGLPLTGFPHNATSASNDSSDAPIDDVYRTTSYDGDSTTLLDSVVDALFSSF 150
           SFY+D  PLT  P N          AP+++         D+T LL S+VD + SSF
Sbjct: 303 SFYEDDSPLTNLPWN----------APLEE---------DNTDLLHSMVDGVLSSF 334

The following BLAST results are available for this feature:

BLAST of CSPI06G14790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G14790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBV2_CUCSA	1.4e-74	99.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194690 PE=4 SV=1	[more]

BLAST of CSPI06G14790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G14790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191981\|gb\|KGN47185.1\|	2.0e-74	99.33	hypothetical protein Csa_6G194690 [Cucumis sativus]	[more]
gi\|659117166\|ref\|XP_008458456.1\|	5.6e-13	40.34	PREDICTED: uncharacterized protein LOC103497858 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G14790.1	CSPI06G14790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G14790	Csa6G194690	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G14790	CsaV3_6G017240	Cucumber (Chinese Long) v3	cpicucB364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G14790	Wild cucumber (PI 183967)	cpicpiB137
CSPI06G14790	Cucumber (Gy14) v1	cgycpiB270
CSPI06G14790	Cucumber (Gy14) v1	cgycpiB392
CSPI06G14790	Cucurbita maxima (Rimu)	cmacpiB385
CSPI06G14790	Cucurbita maxima (Rimu)	cmacpiB863
CSPI06G14790	Cucurbita maxima (Rimu)	cmacpiB927
CSPI06G14790	Cucurbita moschata (Rifu)	cmocpiB374
CSPI06G14790	Cucurbita moschata (Rifu)	cmocpiB906
CSPI06G14790	Cucumber (Chinese Long) v2	cpicuB294
CSPI06G14790	Melon (DHL92) v3.5.1	cpimeB439
CSPI06G14790	Melon (DHL92) v3.5.1	cpimeB501
CSPI06G14790	Watermelon (Charleston Gray)	cpiwcgB505
CSPI06G14790	Watermelon (97103) v1	cpiwmB515
CSPI06G14790	Watermelon (97103) v1	cpiwmB560
CSPI06G14790	Cucurbita pepo (Zucchini)	cpecpiB155
CSPI06G14790	Cucurbita pepo (Zucchini)	cpecpiB327
CSPI06G14790	Bottle gourd (USVL1VR-Ls)	cpilsiB406
CSPI06G14790	Bottle gourd (USVL1VR-Ls)	cpilsiB474
CSPI06G14790	Melon (DHL92) v3.6.1	cpimedB437
CSPI06G14790	Melon (DHL92) v3.6.1	cpimedB489
CSPI06G14790	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G14790	Silver-seed gourd	carcpiB0084
CSPI06G14790	Silver-seed gourd	carcpiB0740
CSPI06G14790	Cucumber (Chinese Long) v3	cpicucB345
CSPI06G14790	Watermelon (97103) v2	cpiwmbB494
CSPI06G14790	Watermelon (97103) v2	cpiwmbB497
CSPI06G14790	Wax gourd	cpiwgoB542
CSPI06G14790	Wax gourd	cpiwgoB564