CsaV3_6G009370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G009370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionheterogeneous nuclear ribonucleoprotein 1
Locationchr6 : 7542680 .. 7547391 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAAGTTGAAAGAGAGAGAAGCATTTTGAAAAAGAAGAAAAAAAAAAAAAAAGAGAAAAAGAAAACAGTTTTATTTGGTTCATTATTATTATTATTATTTTCTCCTCCCGTAAGTTTCTTAGTAAAGATCAAAATTAAAAGAAAAAAAAAGGAAAAAAAATTATATAAGGAAAGTGAGAGAAAATCTTCATCTTCCAGTTTCAAAGTTCTTATACATTTCTCACGCTAGACACCTTCAAGCTTCTGTTTTTTCACGTTCTCTTTGTTAGTGTACAGTTTTGTTTAAACATAAATAGAATTTCCCGATCTGCTTGGTAACTGAATTTGCTTTCGCATAATCAATCTCAAACACAACAATTCTGAAAGGCTTAAAAGCAAAGTTTGTGGTTTCAACCAACATATTTACACACAGAACAGAAGAAGAACAAGAAGGTTGAAGATGTCTCTCCTTATCATCCTCCATCCTCTCAGATCTTAGCTTTTCAAGATTTGGCTTTCTGGGTCTTCGCTAATCGGTCCGTTTTATGGGAATCTCCACTTTATTTTTCGATCTTCTCTGGAATTCTATTAACTTTGGATCCCCTTATTCCTTCTTTTTTGATTCAAATGCTTTCTGGGTTTTCTCAGGTTTGTTGAATTTTGGTCGAACAATTGATCGACGATGGATCCAGTGTTTCCAAATTGATTTATTTTTATTATCTCCTCTCTTGGGATATACATTTCCTCGATTGTCTCTTTGATTCAAAATAAAGGTACTGCTTCTCTTATTGATTTGTCATTCACCCGCATTTGATTCCATTTCCTTCTTCTCTTTCACCTTCAAGAGGTTACAGATTACAATTCTTCTTCTTATCTTTGTACACCGATCTTCTACTATAATGAATCCTCATACCTGATTTTATTCCCTTCATTTCATTTCTACATCACTCTCCTTAAAATTCGATCTTCAGCTCTGCAATGGATGTTCGGGAATTTAGATTTCTGTTGTGTTTTTTTTCCTTATCTGAATCGACTAGAAATGTATGGATGCTATCTGCATTTGATGGGTTTTGGACATCTCAATGATATATGGCTTCTGTTGCTGTGGTATGTAGGAAAAGGAAAATGCAAACTGATAGTGGCAAATTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGACCGTCTTAAAGAGTATTTCAATGCATATGGTGATGTTGTAGAAGCTGTCATTATGAAGGATCGGACCACAGGTCGTGGTCGAGGCTTTGGCTTCATTGTTTTTGCTGATCCAAGTGTTGCAGATAGAGTTATAAGGGAGAAGCATAATATTGATGGAAGAATGGTGAGTTTGTTAACCTCAAATGTGTTTCTTTGGACCTGCAGAGATAGCTCATTTCTTATTAGCTCGTGATTCGTAATGTATTGCTGAGCCGTTTATTTTTCATCCTTGGTGAAATTTCTAATTGTCTGAGGATTGAAAGTTCTTTTCCTGATTAGTTTCTCAGCTTGACTTCAATCACTATAGTCTGCATTTGCCATTTTAAGACTATTTGAACTCGACCTTCATTCTTCAATTTTCTTCATCCTCAGGTTGAGGCTAAAAGGGCTGTTCCTAGGAATGATCAGAACATTGTAGGTAGAACCAGTGGTAGCATTAATGTTTCTCCTGGTCCTGGACGAACTCGAAAGATATTTGTTGGGGGGTTAGCATCTACTGTTACAGAAAGTGAATTCAAGAATTATTTTGATCAATTCGGGACAATTACAGATGTTGTGGTGATGTACGACCACAATACTCTTCGACCCAGAGGATTTGGGTTTATTACATATGATTCTGAAGAAGCAGTAGAGAAAGTTCTTATCAAGACTTTCCATGAATTGAATGGCAAAATGGTTGAAGTCAAGCGGGCAGTTCCGAAAGAGTTGTCACCAGGCCCCAGCCGTAGTCCACTTGGTGGATACAATTATGGTCAGAGTAGGGTTAATAGCTTCCTTAATGGTTACACTCAGGGTTACAGTTCAAGTACAATTGGAGGCTATGGTGTTAGAGTGGATGGTAGATTTAGTCCAGTTTCCAGTGGTCGAAGTGTATTCACCCCATTTGGTTCAGGTTATGGAATGGGTGTGAACTTTGATATTGGCTTAAACCCAGGGTATGGGGGAAATTCTAATTTCGCCAGTAATCTCAACTATGGACGGGGACTGAGCCCTTATTATACTGGTAACTCAGATAGATTTGGCAATATAGGGTATGAAAGTGGCAATGGAGGAAACTCGTCCTTCTTCAGCTCAGAAACTCAAAACTTGTGGGGAAGTGGAGGGCTCAACAATGGAACAAACTCTGCCAATTCCAATGCTCATTTGGGATCAGCAACTGGTGGCAGCGTTGGGGGAACTGGATTTGCCAATTCTGGAGTTAGCTGGGGTAGTTCGGGAATCTCGTCTCAAGGTGGAGGAAACAATGTTTTTAGTAACTCTGGGAATCTTAATTATGGAGGTGTTGATAGTAGTTATAGTCTAGGAGCTGGAGGGTATGGGAGAAACAGTGGTACTGTTTTGCCTCCAACATCATCATTTCCTACCTCAACTGTCGGTTTTGACGGTCCCTTTGCTGATTTCTACAGTGCCGGTTATGGTGATCCCACGTGGCGTTCTTCCAACTTTGAAAGAGATGGATCTGGACCCTTTGGTTATGGGCTCGGCAGTGCTGCTTCGGATGTCTCAGCCAGAAGCTCTCCTGGTTTTATTGGTGGTCATAGTGTTAATAGGAGGCAGTCAAACAGAGGTTAGAGCCACTGTTTCAAAATTTATACAATGCCTCATTCATTATTTCAATAGTATCTCCTGATTTCTCTTATGAGAAATTTTGTTTTCCAAATGCTCCGATTATGAACAACCAATTGTAGAATTATATTTTTATTGATCTTGCAGAAAGTTGTCATAGCATCATCATCCATGCTAATTCTGCATTTGATGATCTAGATATTAGCTCATTTTGATACTAAATCACAATTATTTAGTTGCTAACCGAGCAAATTTATATTGTCTAGTTGGCTGACCTGTGTATACATTTTCTTTTACACTCAGTGTGGGAATGATATACGTTCAGTATGTGTCTGGTACAGCTGAAATGTGACATAGTATATTGTAAGAATATTTAGAGTTAGCTCCCAATGAACCTTTTTTGGTTGCCTGGATCTTGTTTCCAGGAACACGCTGTCTAAGGAATTAAAACACCATGTTGGTTTTGGCTGAGGTAGCACTCTTCTATAGTTGTTTTCTTGGGATTACTGGAAAAAGAAGGGAACAAGAGTAACTTATATAGTCATACTAATTGAATTTACTGAGTTATATAAATGAAGGGCATTCAAATATCAAACTTGCATAAACTACTCAACTGATCTTTTTTTTTTTTTTCAATGGAAAGGTGATTTCTCTCACTTTCACTACCTTGCATTTGGTGATTGAATTTTTATGGGTCCTGTACATAACCTCTGTGTTCACATGCACACATATGCTTGCAAACCTGCAATTGTGCAGCTCTCTCGTTTAAACTTGACAAGCTCAAGCATTTGGCTAGTTCTAGATCATCATAAATGTTTAACAACCTCATGCTTGTTGAATTCTCCTTGTCCATATATGAAAAAACTTGGATGTTTCTTTCTAGGCTCATTACAATGTCCTAAAATATATCCCTTTTCATTTTATCATGTGACTATTGAGGCATCGATTATATTTAGTACAGCCTTTTAAAATGTTTTAATTAACGAGTGTTACCCAAAATCACAAAATGGCACCAGATAATCTGTGATGTTGAATTGAAGTTTAGGATAATGAAGCTGTTAACCAAGACACACTACGGTGTTGTGTATCATTACGTCATTTCGTGTTAAATGCTCTGGTCATATAGTGTTATTCTTTTCCTCCTTTTATTTGTTGCCTATCTGATGAAAAGAAAATGGAGTGATAATATTCTCTGGTATTAATTGTCAAAAGCAGATTGTTAGATACTCAATCTCCTCGTTTTTTGCTTCAGGAAACACTACCTAGGAATGATCGGATATGTCGACATAGTAGATGAAGATAATTGGTGAAGCATATGAAGTTGCGGACCAATCAATAGAATATTCAGTTCAATTACCCAACAAAAAGGAAAAAAAGGGGAAAAGAAAGAAGAATTATCTAAAGCTAACTGAGTGCCGATGCTGAGAACCAAGCTTAGAGGTATTTAGCCACTTGGGATTTTGTGTTCAGGTTTGAGTTTTGATTAGAAATTTTTCTTTTGGTTTTGTTTTTTTTTTCTTCTTATATTTGAGTGAGATGTAAAATCAGATTGCGGCAGTATAGCAAAATACGTATCATCATGCATCTTCAGTGAGGTGGGGATCCACAAAGTTATAGACTATGCCTTGTTTTTTATTTAAGGTCAATCTTTTTAATTTTTAAAGTTCATCATAATTGTAGCAGTAATACCGGAGGCAAAGTTGTGAGCTTTGTTTAGGAATACTGTTTGTCCCATCATTTTGGTTTGTTTTTGAACAAATTTGTATCAGAGTTCCTCTTTTTTTGTTGAATTGTTAGTGTGAAAAACATTCAAGGGATATCCATCTAGGCTCTCCCTATGAATAAATAACCACAAATTCTTCGTCTTTTCTCTTTTCGAGTTAGCTTTCATAACAACATGAAAAATTCTTGTTTGATGCTTTTAGTTTCTGCTTTGAATAAAT

mRNA sequence

ATGCAAACTGATAGTGGCAAATTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGACCGTCTTAAAGAGTATTTCAATGCATATGGTGATGTTGTAGAAGCTGTCATTATGAAGGATCGGACCACAGGTCGTGGTCGAGGCTTTGGCTTCATTGTTTTTGCTGATCCAAGTGTTGCAGATAGAGTTATAAGGGAGAAGCATAATATTGATGGAAGAATGGTTGAGGCTAAAAGGGCTGTTCCTAGGAATGATCAGAACATTGTAGGTAGAACCAGTGGTAGCATTAATGTTTCTCCTGGTCCTGGACGAACTCGAAAGATATTTGTTGGGGGGTTAGCATCTACTGTTACAGAAAGTGAATTCAAGAATTATTTTGATCAATTCGGGACAATTACAGATGTTGTGGTGATGTACGACCACAATACTCTTCGACCCAGAGGATTTGGGTTTATTACATATGATTCTGAAGAAGCAGTAGAGAAAGTTCTTATCAAGACTTTCCATGAATTGAATGGCAAAATGGTTGAAGTCAAGCGGGCAGTTCCGAAAGAGTTGTCACCAGGCCCCAGCCGTAGTCCACTTGGTGGATACAATTATGGTCAGAGTAGGGTTAATAGCTTCCTTAATGGTTACACTCAGGGTTACAGTTCAAGTACAATTGGAGGCTATGGTGTTAGAGTGGATGGTAGATTTAGTCCAGTTTCCAGTGGTCGAAGTGTATTCACCCCATTTGGTTCAGGTTATGGAATGGGTGTGAACTTTGATATTGGCTTAAACCCAGGGTATGGGGGAAATTCTAATTTCGCCAGTAATCTCAACTATGGACGGGGACTGAGCCCTTATTATACTGGTAACTCAGATAGATTTGGCAATATAGGGTATGAAAGTGGCAATGGAGGAAACTCGTCCTTCTTCAGCTCAGAAACTCAAAACTTGTGGGGAAGTGGAGGGCTCAACAATGGAACAAACTCTGCCAATTCCAATGCTCATTTGGGATCAGCAACTGGTGGCAGCGTTGGGGGAACTGGATTTGCCAATTCTGGAGTTAGCTGGGGTAGTTCGGGAATCTCGTCTCAAGGTGGAGGAAACAATGTTTTTAGTAACTCTGGGAATCTTAATTATGGAGGTGTTGATAGTAGTTATAGTCTAGGAGCTGGAGGGTATGGGAGAAACAGTGGTACTGTTTTGCCTCCAACATCATCATTTCCTACCTCAACTGTCGGTTTTGACGGTCCCTTTGCTGATTTCTACAGTGCCGGTTATGGTGATCCCACGTGGCGTTCTTCCAACTTTGAAAGAGATGGATCTGGACCCTTTGGTTATGGGCTCGGCAGTGCTGCTTCGGATGTCTCAGCCAGAAGCTCTCCTGGTTTTATTGGTGGTCATAGTGTTAATAGGAGGCAGTCAAACAGAGGAAACACTACCTAG

Coding sequence (CDS)

ATGCAAACTGATAGTGGCAAATTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGACCGTCTTAAAGAGTATTTCAATGCATATGGTGATGTTGTAGAAGCTGTCATTATGAAGGATCGGACCACAGGTCGTGGTCGAGGCTTTGGCTTCATTGTTTTTGCTGATCCAAGTGTTGCAGATAGAGTTATAAGGGAGAAGCATAATATTGATGGAAGAATGGTTGAGGCTAAAAGGGCTGTTCCTAGGAATGATCAGAACATTGTAGGTAGAACCAGTGGTAGCATTAATGTTTCTCCTGGTCCTGGACGAACTCGAAAGATATTTGTTGGGGGGTTAGCATCTACTGTTACAGAAAGTGAATTCAAGAATTATTTTGATCAATTCGGGACAATTACAGATGTTGTGGTGATGTACGACCACAATACTCTTCGACCCAGAGGATTTGGGTTTATTACATATGATTCTGAAGAAGCAGTAGAGAAAGTTCTTATCAAGACTTTCCATGAATTGAATGGCAAAATGGTTGAAGTCAAGCGGGCAGTTCCGAAAGAGTTGTCACCAGGCCCCAGCCGTAGTCCACTTGGTGGATACAATTATGGTCAGAGTAGGGTTAATAGCTTCCTTAATGGTTACACTCAGGGTTACAGTTCAAGTACAATTGGAGGCTATGGTGTTAGAGTGGATGGTAGATTTAGTCCAGTTTCCAGTGGTCGAAGTGTATTCACCCCATTTGGTTCAGGTTATGGAATGGGTGTGAACTTTGATATTGGCTTAAACCCAGGGTATGGGGGAAATTCTAATTTCGCCAGTAATCTCAACTATGGACGGGGACTGAGCCCTTATTATACTGGTAACTCAGATAGATTTGGCAATATAGGGTATGAAAGTGGCAATGGAGGAAACTCGTCCTTCTTCAGCTCAGAAACTCAAAACTTGTGGGGAAGTGGAGGGCTCAACAATGGAACAAACTCTGCCAATTCCAATGCTCATTTGGGATCAGCAACTGGTGGCAGCGTTGGGGGAACTGGATTTGCCAATTCTGGAGTTAGCTGGGGTAGTTCGGGAATCTCGTCTCAAGGTGGAGGAAACAATGTTTTTAGTAACTCTGGGAATCTTAATTATGGAGGTGTTGATAGTAGTTATAGTCTAGGAGCTGGAGGGTATGGGAGAAACAGTGGTACTGTTTTGCCTCCAACATCATCATTTCCTACCTCAACTGTCGGTTTTGACGGTCCCTTTGCTGATTTCTACAGTGCCGGTTATGGTGATCCCACGTGGCGTTCTTCCAACTTTGAAAGAGATGGATCTGGACCCTTTGGTTATGGGCTCGGCAGTGCTGCTTCGGATGTCTCAGCCAGAAGCTCTCCTGGTTTTATTGGTGGTCATAGTGTTAATAGGAGGCAGTCAAACAGAGGAAACACTACCTAG

Protein sequence

MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRSVFTPFGSGYGMGVNFDIGLNPGYGGNSNFASNLNYGRGLSPYYTGNSDRFGNIGYESGNGGNSSFFSSETQNLWGSGGLNNGTNSANSNAHLGSATGGSVGGTGFANSGVSWGSSGISSQGGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSAGYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT
Homology
[Close]
BLAST of CsaV3_6G009370 vs. NCBI nr
Match: XP_004140014.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN46587.1 hypothetical protein Csa_6G110300 [Cucumis sativus])

HSP 1 Score: 724.9 bits (1870), Expect = 1.7e-205
Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
           XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA
Sbjct: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
           GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]
BLAST of CsaV3_6G009370 vs. NCBI nr
Match: XP_008464191.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 723.8 bits (1867), Expect = 3.9e-205
Identity = 475/476 (99.79%), Postives = 476/476 (100.00%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
           XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA
Sbjct: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
           GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]
BLAST of CsaV3_6G009370 vs. NCBI nr
Match: XP_022140537.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Momordica charantia])

HSP 1 Score: 699.1 bits (1803), Expect = 1.0e-197
Identity = 437/476 (91.81%), Postives = 447/476 (93.91%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF+A+GDVVEAVIMKDRTTGRGRGFGFIVFAD S+A
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGDVVEAVIMKDRTTGRGRGFGFIVFADSSIA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VFTPFGSGYGMGVNF+IGLNPGYGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 301 GGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQ 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
              +NVFSN+GNLNYGGVDSSYSLGAGGYGRN+GTVLPPTSSFPTSTVGFDGPFADFYSA
Sbjct: 361 GGGSNVFSNTGNLNYGGVDSSYSLGAGGYGRNTGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
           GYGDPTWRSSNFERDGSGPFGYGLGSAASDVS+RSSPGFIG HSVNRRQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSSRSSPGFIGAHSVNRRQSNRGNTT 475

[Close]
BLAST of CsaV3_6G009370 vs. NCBI nr
Match: XP_022140538.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Momordica charantia])

HSP 1 Score: 693.0 bits (1787), Expect = 7.3e-196
Identity = 434/473 (91.75%), Postives = 444/473 (93.87%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF+A+GDVVEAVIMKDRTTGRGRGFGFIVFAD S+A
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGDVVEAVIMKDRTTGRGRGFGFIVFADSSIA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VFTPFGSGYGMGVNF+IGLNPGYGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 301 GGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQ 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
              +NVFSN+GNLNYGGVDSSYSLGAGGYGRN+GTVLPPTSSFPTSTVGFDGPFADFYSA
Sbjct: 361 GGGSNVFSNTGNLNYGGVDSSYSLGAGGYGRNTGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRG 474
           GYGDPTWRSSNFERDGSGPFGYGLGSAASDVS+RSSPGFIG HSVNRRQSNRG
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSSRSSPGFIGAHSVNRRQSNRG 472

[Close]
BLAST of CsaV3_6G009370 vs. NCBI nr
Match: XP_022948040.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 648.3 bits (1671), Expect = 2.1e-182
Identity = 406/476 (85.29%), Postives = 426/476 (89.50%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF+A+G+VVEAVIMKDR TGRGRGFGFIVF DP+VA
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRV+REKHNIDGRMVEAKRAVPRNDQNIVGRTSG+INVSP  GRT+KIFVGGLASTVTES
Sbjct: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFK+YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSE+AV+KVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIG YGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VFTPFGSGYGMGVNF+IGLNPGYGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGN 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 301 GGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQ 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
              N++FSNSG+LNYGGVDS Y+LGAGGYGRNSGTVLPPTSSF TS VGFDG  ADFYSA
Sbjct: 361 AGGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTS-VGFDGSLADFYSA 420

Query: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
            Y DPTW  SNFERDGSGP GYGLG+AASDVS+RSSPGFIGG SVNRRQS+RGNTT
Sbjct: 421 NYSDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 474

[Close]
BLAST of CsaV3_6G009370 vs. TAIR10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-127
Identity = 334/491 (68.02%), Postives = 382/491 (77.80%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQ+D+GKLF+GGISWDT+E+RLKEYF+++G+V+EAVI+KDRTTGR RGFGF+VFADP+VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRT-SGSINVSP-GPGRTRKIFVGGLASTVT 120
           + VI EKHNIDGR+VEAK+AVPR+DQN+V R+ S SI  SP GPGRTRKIFVGGL S+VT
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120

Query: 121 ESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEV 180
           ES+FK YF+QFGT TDVVVMYDHNT RPRGFGFITYDSEEAVEKVL+KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180

Query: 181 KRAVPKELSPGPSRSPLG-GYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSS 240
           KRAVPKELSPGPSRSPLG GY+YG +RVN+ LNGY QG++ + +GGYG+R+DGRFSPV +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240

Query: 241 GRSVFTPFGSGYGMGVNFDIGLNPGY-GGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           GRS F  + SGYGM VNFD GL  G+ GG XXXXXXXXXXXXXXXXXXXXX         
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTXXXXXXXXXXXXXXXXXXXXXRFGPAVGYE 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           
Sbjct: 301 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGPFGNSGVN 360

Query: 361 XXXXXXXNNVFSNSG-NLNYGG-VDSSYSLGAGGY-GRNSG-TVLPPTSSF----PTSTV 420
                  NN  SN      YGG  +S + LG GGY  RN G     P+SSF     T+  
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420

Query: 421 GFD-GPFADFYSAG--YGDPTWRSSNFERDGSGPFGYGLGSA--ASDVSAR-SSPGFIGG 474
           G+D    A+FY  G  Y DPTWRS   E +G  PF YG+G    +SDVSAR SSPG++G 
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480

[Close]
BLAST of CsaV3_6G009370 vs. TAIR10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 328.6 bits (841), Expect = 6.6e-90
Identity = 163/286 (56.99%), Postives = 210/286 (73.43%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M+ +S KLF+GGISW+T EDRL++YF+++G+V+EAVIMKDR TGR RGFGF+VFADP+VA
Sbjct: 1   MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60

Query: 61  DRVIREKHNIDGR----------------------MVEAKRAVPRNDQNIVGRTSGSINV 120
           +RV+  KH IDG+                      +VEAK+AVPR+D  +  +++ S+  
Sbjct: 61  ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG 120

Query: 121 SPGPGRTRKIFVGGLASTVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEE 180
           SPGP  ++KIFVGGLAS+VTE+EFK YF QFG ITDVVVMYDH T RPRGFGFI+YDSEE
Sbjct: 121 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 180

Query: 181 AVEKVLIKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSS 240
           AV+KVL KTFHELNGKMVEVK AVPK+++    R+ +   ++G SR++S LN YTQG+S 
Sbjct: 181 AVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 240

Query: 241 STIGGYGVRVDGRFSPVSSGRSVFTPFGSGYGMGVNFDIGLNPGYG 265
           S I GYGV+ + R+SP    R  F+PFG GYG+ +NF+      YG
Sbjct: 241 SPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYG 286

[Close]
BLAST of CsaV3_6G009370 vs. TAIR10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-86
Identity = 212/490 (43.27%), Postives = 262/490 (53.47%), Query Frame = 0 

Query: 3   TDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADR 62
           +D GKLF+GGISWDTDE+RL+EYF  YGD+VEAVIM+DRTTGR RGFGFIVFADPSVA+R
Sbjct: 12  SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71

Query: 63  VIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSIN-VSP------GPGRTRKIFVGGLAS 122
           VI +KH IDGR VEAK+AVPR+DQ ++ R +  ++ +SP      G  RT+KIFVGGL S
Sbjct: 72  VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131

Query: 123 TVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKM 182
           ++TE+EFKNYFDQFGTI DVVVMYDHNT RPRGFGFIT+DSEE+V+ VL KTFHELNGKM
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191

Query: 183 VEVKRAVPKEL-SPGPSRSPLGGY--NYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRF 242
           VEVKRAVPKEL S  P+RSPL GY  NYG                            GRF
Sbjct: 192 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVXXXXXXXXXXXXXXXXXXXXXXXSA-GRF 251

Query: 243 SPVSSGRSVFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXX 302
           SP+ SGR+ F    S +G+G+N ++ LN  + GN                          
Sbjct: 252 SPIGSGRNAF----SSFGLGLNQELNLNSNFDGNTLGYSRIPGNQYFNSASPNRYNSPIG 311

Query: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
                                                                       
Sbjct: 312 YNRGDSAYNPSNRDLWGNRSDSSGPGWNLGV----------------------------- 371

Query: 363 XXXXXXXXXXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDG 422
                       +V +N GN     V S  +     YG  SG       SF  +T GFDG
Sbjct: 372 ------------SVGNNRGNWGLSSVVSDNNGYGRSYGAGSGL---SGLSFAGNTNGFDG 431

Query: 423 PFADFY--SAGYGDPTWR------SSNFERDG-SGPFGYGLGSAASDVSARSSPGFIGGH 474
              + Y  S+ Y D TW+       S+ E DG S  +G+G+ +  SD SA +S G+ G +
Sbjct: 432 SIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNY 452

[Close]
BLAST of CsaV3_6G009370 vs. TAIR10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 308.9 bits (790), Expect = 5.4e-84
Identity = 214/499 (42.89%), Postives = 269/499 (53.91%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M++D GKLF+GGISWDTDE+RL++YF+ YGDVVEAVIM+DR TGR RGFGFIVFADP V+
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSIN----VSPGPGRTRKIFVGGLAST 120
           +RVI +KH IDGR VEAK+AVPR+DQ ++ R +  I+    V  G GRT+KIFVGGL S+
Sbjct: 61  ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120

Query: 121 VTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMV 180
           +TE EFKNYFDQFGTI DVVVMYDHNT RPRGFGFIT+DS++AV++VL KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180

Query: 181 EVKRAVPKELSPGPS-RSPL-GGYNYG----QSRVNSFLNGYTQGYS-SSTIGGYGVRVD 240
           EVKRAVPKE+SP  + RSPL  G NYG    +   NS+ N +  G    +++G  G    
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVG---- 240

Query: 241 GRFSPV-SSGRSVFTPFGSGYGMGVNFD--IGLNPGYGGNXXXXXXXXXXXXXXXXXXXX 300
            RFSPV  SGR+      S +G+G+N D  + LNP   G                     
Sbjct: 241 RRFSPVIGSGRNAV----SAFGLGLNHDLSLNLNPSCDGT-------------------- 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                                                                       
Sbjct: 301 ----------------------SSTFGYNRIPSNPYFNGASPNRYTSPIGHNRTESPYNS 360

Query: 361 XXXXXXXXXXXXXXXXXNNVFSNSGNLNYGGVDSSYSLG--AGGYGRNSGTVLPPTSSFP 420
                            N   SN  N    G+ SS ++     G+GRN GT     SS P
Sbjct: 361 NNRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGT-SSGLSSSP 420

Query: 421 TSTVGFDGPFADFYSAG--YGDPTWR------SSNFERDG-SGPFGYGLGSAASDVSARS 475
            +  GF+G   + Y  G  Y D TW+       S+ E D  S  +GY + +  SD SA  
Sbjct: 421 FN--GFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSAND 446

[Close]
BLAST of CsaV3_6G009370 vs. TAIR10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-65
Identity = 113/194 (58.25%), Postives = 155/194 (79.90%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M +D GKLFVGGISW+TDED+L+E+F  YG+V +A++M+D+ TGR RGFGF++F+DPSV 
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPG-----RTRKIFVGGLAS 120
           DRV++EKH+ID R V+ KRA+ R +Q + GRT G++N S   G     +T+KIFVGGL  
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRT-GNLNTSRSSGGDAYNKTKKIFVGGLPP 120

Query: 121 TVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKM 180
           T+T+ EF+ YF+ +G +TDV +MYD  T RPRGFGF+++DSE+AV+ VL KTFH+L+GK 
Sbjct: 121 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 180

Query: 181 VEVKRAVPKELSPG 190
           VEVKRA+PK+ +PG
Sbjct: 181 VEVKRALPKDANPG 193

[Close]
BLAST of CsaV3_6G009370 vs. Swiss-Prot
Match: sp|Q8W034|RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-64
Identity = 113/194 (58.25%), Postives = 155/194 (79.90%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M +D GKLFVGGISW+TDED+L+E+F  YG+V +A++M+D+ TGR RGFGF++F+DPSV 
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPG-----RTRKIFVGGLAS 120
           DRV++EKH+ID R V+ KRA+ R +Q + GRT G++N S   G     +T+KIFVGGL  
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRT-GNLNTSRSSGGDAYNKTKKIFVGGLPP 120

Query: 121 TVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKM 180
           T+T+ EF+ YF+ +G +TDV +MYD  T RPRGFGF+++DSE+AV+ VL KTFH+L+GK 
Sbjct: 121 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 180

Query: 181 VEVKRAVPKELSPG 190
           VEVKRA+PK+ +PG
Sbjct: 181 VEVKRALPKDANPG 193

[Close]
BLAST of CsaV3_6G009370 vs. Swiss-Prot
Match: sp|Q9C652|RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-46
Identity = 96/199 (48.24%), Postives = 135/199 (67.84%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M  D  KLFVGGI+ +T E+ LK+YF+ YG V+EAV+ K++ TG+ RGFGF+ FA+    
Sbjct: 1   MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRND-----------QNIVGRTSGSINVSPGPG---RTR 120
            + +R+ H I G+ V+ ++A+ +++           +  V + +G +      G   RT+
Sbjct: 61  VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120

Query: 121 KIFVGGLASTVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIK 180
           KIFVGGL+S  TE EFK+YF++FG  TDVVVM+D  T RPRGFGF+TYDSE++VE V+  
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180

Query: 181 TFHELNGKMVEVKRAVPKE 186
            FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199

[Close]
BLAST of CsaV3_6G009370 vs. Swiss-Prot
Match: sp|Q98SJ2|DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.3e-46
Identity = 102/239 (42.68%), Postives = 142/239 (59.41%), Query Frame = 0 

Query: 6   GKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRVIR 65
           GKLFVGG+ W T ++ L+ YF+ YG+VV+ VIMKD+TT + RGFGF+ F DP+    V+ 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 66  EK-HNIDGRMVEAKRAVPRNDQNIVGR-TSGSINVSPGP--GRTRKIFVGGLASTVTESE 125
            + H +DGR ++ K   PR  Q    R   G     P     R+ KIFVGG+     E+E
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129

Query: 126 FKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRA 185
            K YF++FG +T+VV++YD    RPRGFGFIT++ E++V++ +   FH++ GK VEVKRA
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 189

Query: 186 VPKELSPGPSRSPLGGYNYGQSRVNSFLNGYT-------QGYS--------SSTIGGYG 226
            P++ S   +  P G   +G   + S  NG+T       QGYS          TIGGYG
Sbjct: 190 EPRD-SKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGYG 247

[Close]
BLAST of CsaV3_6G009370 vs. Swiss-Prot
Match: sp|O94432|YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.6e-45
Identity = 78/181 (43.09%), Postives = 124/181 (68.51%), Query Frame = 0 

Query: 4   DSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRV 63
           + GK+F+GG++W+T +D L++YF  +G+V++  +M+D TTGR RGFGF+ F +P   + V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220

Query: 64  IREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEFK 123
           + ++H++DG++++ KRA+PR +Q                 +T K+FVGG+    TE EF+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFR 280

Query: 124 NYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVP 183
           N+F+QFG + D  +M D +T RPRGFGF+TY++E AVE  + + +  ++GK VEVKRA P
Sbjct: 281 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 325

Query: 184 K 185
           K
Sbjct: 341 K 325

[Close]
BLAST of CsaV3_6G009370 vs. Swiss-Prot
Match: sp|Q9VVE5|MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 181.4 bits (459), Expect = 2.3e-44
Identity = 87/184 (47.28%), Postives = 122/184 (66.30%), Query Frame = 0 

Query: 4   DSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRV 63
           D GK+F+GG+SW T  + L++YF  YGD+ EA++MKD TT R RGFGF+ F+DP+  D+V
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 64  IRE-KHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEF 123
           + +  H +DG+ V+ K A PR     +              RT+KIFVGGL++  T  + 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPRRAHPKM------------VTRTKKIFVGGLSAPTTLEDV 146

Query: 124 KNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAV 183
           K+YF+QFG I D ++M+D  T R RGFGF+T+ SE+ V+KV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 198

Query: 184 PKEL 187
           PKE+
Sbjct: 207 PKEV 198

[Close]
BLAST of CsaV3_6G009370 vs. TrEMBL
Match: tr|A0A0A0KDX2|A0A0A0KDX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110300 PE=4 SV=1)

HSP 1 Score: 724.9 bits (1870), Expect = 1.1e-205
Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
           XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA
Sbjct: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
           GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]
BLAST of CsaV3_6G009370 vs. TrEMBL
Match: tr|A0A1S3CKY6|A0A1S3CKY6_CUCME (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103502128 PE=4 SV=1)

HSP 1 Score: 723.8 bits (1867), Expect = 2.6e-205
Identity = 475/476 (99.79%), Postives = 476/476 (100.00%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
           XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA
Sbjct: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
           GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]
BLAST of CsaV3_6G009370 vs. TrEMBL
Match: tr|A0A1Q3C2Z2|A0A1Q3C2Z2_CEPFO (RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18075 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 3.9e-153
Identity = 306/475 (64.42%), Postives = 351/475 (73.89%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQ+D+GKLF+GGISWDT+E+RLK+YF+A+G+V+EAVIMKDRTTGR RGFGF+VFADP+VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKDYFSAFGEVMEAVIMKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DRVI+EKHNIDGRMVEAK+AVPR+DQN++ R S SI  SPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIKEKHNIDGRMVEAKKAVPRDDQNMMSRNSSSIQGSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EF+ YFDQFGTITDVVVMYDHNT RPRGFGFITYDSEEAV+KVL+KTFHELNGKMVEVKR
Sbjct: 121 EFRKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYG SRVNSFL+GYTQGY+ S IGGYG+R+DGRFSPV  GRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGMSRVNSFLSGYTQGYTPSAIGGYGLRMDGRFSPVPGGRS 240

Query: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
            F PFG+GYG+G+NF+ GL+  Y GN                                  
Sbjct: 241 GFPPFGNGYGIGMNFEPGLSSSYEGNANFNSNLSYGRGLNPYFIGNANRLVNSIGYDGSN 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                                XXXXXXXXXXXXXXXXXXXX                   
Sbjct: 301 GGNTSFFSSVTRNLWGNGDLNXXXXXXXXXXXXXXXXXXXXGSNFGNSGANLRSSAILPQ 360

Query: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420
              NN  +N+ N  YGG ++S+ LG G YGRNSGT + PTSS+  S  GFDG F+D Y +
Sbjct: 361 GGGNNATNNNINFEYGGGENSFGLGTGEYGRNSGTNVAPTSSYAGSNSGFDGAFSDLYES 420

Query: 421 G--YGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRG 474
           G  YGD TWRSSN E D SG FGYG G+A SDV+ +SSPG++GG+SVN+RQSNRG
Sbjct: 421 GSVYGDSTWRSSNSEHDASGSFGYGFGNATSDVATKSSPGYVGGYSVNKRQSNRG 475

[Close]
BLAST of CsaV3_6G009370 vs. TrEMBL
Match: tr|A0A0B0MSK2|A0A0B0MSK2_GOSAR (RNA-binding Musashi OS=Gossypium arboreum OX=29729 GN=F383_27058 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 9.2e-147
Identity = 326/474 (68.78%), Postives = 367/474 (77.43%), Query Frame = 0 

Query: 5   SGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRVI 64
           +GKLF+GGISWDT+E+RLKEYF+ +G+VVEAVIMKDRTTGR RGFGF+VF+DP+VA+RVI
Sbjct: 4   NGKLFIGGISWDTNEERLKEYFSTFGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAERVI 63

Query: 65  REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEFKN 124
            EKHNIDGRMVEAK+AVPR+DQNI+ R++ S + SPGPGRT+KIFVGGLASTVTES+FK 
Sbjct: 64  LEKHNIDGRMVEAKKAVPRDDQNIMSRSTSSTHGSPGPGRTKKIFVGGLASTVTESDFKK 123

Query: 125 YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVPK 184
           YFDQFG ITDVVVMYDHNT RPRGFGFITYD EEAVEKVL+K FHELNGKMVEVKRAVPK
Sbjct: 124 YFDQFGNITDVVVMYDHNTQRPRGFGFITYDLEEAVEKVLLKNFHELNGKMVEVKRAVPK 183

Query: 185 ELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRSVFTP 244
           ELSPGPSRSPL GYNYG +RVNSFLNGYTQGY+ S++GGYG+R+DGRFSP++ GRSVF P
Sbjct: 184 ELSPGPSRSPLSGYNYGLNRVNSFLNGYTQGYTPSSVGGYGLRMDGRFSPIAGGRSVFPP 243

Query: 245 FGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 304
           FGSGYGMG+NF+ GLNP     XXXXXXXXXXXXXX                        
Sbjct: 244 FGSGYGMGMNFEPGLNP-XXXXXXXXXXXXXXXXXXSPYYIGNNNRFGSPIGCGGTTGGN 303

Query: 305 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 364
                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         N
Sbjct: 304 TSFFSSVTRNLWGNGGLNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAISSQVGGN 363

Query: 365 NVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSAG--Y 424
           NV SNS N  YG  D+S+ LG  GYGRNSGT + PTSS+     G+DG FAD Y     Y
Sbjct: 364 NVSSNSANFAYGTGDNSFGLGTAGYGRNSGTNVAPTSSYVALNGGYDGAFADIYGGASVY 423

Query: 425 GDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
           GD TWRSS  E+D SG FGY LG AASDVS +SSPG++GG+SVNRRQSNRG T+
Sbjct: 424 GDTTWRSSTSEQDDSGSFGYVLGGAASDVSGKSSPGYVGGYSVNRRQSNRGKTS 476

[Close]
BLAST of CsaV3_6G009370 vs. TrEMBL
Match: tr|A0A1U8LC95|A0A1U8LC95_GOSHI (heterogeneous nuclear ribonucleoprotein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107924715 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 4.6e-146
Identity = 325/474 (68.57%), Postives = 364/474 (76.79%), Query Frame = 0 

Query: 5   SGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRVI 64
           +GKLF+GGISWDT E+ LKEYF+ +G+VVEAVIMKDRTTGR RGFGF+VF+DP+VA+RVI
Sbjct: 4   NGKLFIGGISWDTKEESLKEYFSTFGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAERVI 63

Query: 65  REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEFKN 124
            EKHNIDGRMVEAK+AVPR+DQNI+ R++ S + SPGPGRT+KIFVGGLASTVTES+FK 
Sbjct: 64  LEKHNIDGRMVEAKKAVPRDDQNIMSRSTSSTHGSPGPGRTKKIFVGGLASTVTESDFKK 123

Query: 125 YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVPK 184
           YFDQFG ITDVVVMYDHNT RPRGFGFITYD EEAVEKVL+K FHELNGKMVEVKRAVPK
Sbjct: 124 YFDQFGNITDVVVMYDHNTQRPRGFGFITYDLEEAVEKVLLKNFHELNGKMVEVKRAVPK 183

Query: 185 ELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRSVFTP 244
           ELSPGPSRSPL GYNYG +RVNSFLNGYTQGY+ S++GGYG+R+DGRFSP++ GRSVF P
Sbjct: 184 ELSPGPSRSPLSGYNYGLNRVNSFLNGYTQGYTPSSVGGYGLRMDGRFSPIAGGRSVFPP 243

Query: 245 FGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 304
           FGSGYGMG+NF+ GLNP     XXXXXXXXXXXXXX                        
Sbjct: 244 FGSGYGMGMNFEPGLNP-XXXXXXXXXXXXXXXXXXSPYYIGNNNRFGSPIGCGGTTGGN 303

Query: 305 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 364
                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
Sbjct: 304 TSFFSSVTRNLWGNGGLNYNTNAGSSGAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 363

Query: 365 NVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSAG--Y 424
           NV SNS N  YG  D+S+ LG  GYGRNSGT + PTSS+  S  G+DG FAD Y     Y
Sbjct: 364 NVSSNSANFAYGTGDNSFGLGTAGYGRNSGTNVAPTSSYVASNGGYDGAFADIYGGASVY 423

Query: 425 GDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 477
           GD TWRSS  E+D SG FGY LG AASDVS +SSPG++GG+SVNRRQSNRG  T
Sbjct: 424 GDTTWRSSTSEQDDSGSFGYVLGGAASDVSGKSSPGYVGGYSVNRRQSNRGIAT 476

The following BLAST results are available for this feature:
BLAST of CsaV3_6G009370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140014.11.7e-205100.00PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN46587... [more]
XP_008464191.13.9e-20599.79PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo][more]
XP_022140537.11.0e-19791.81heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Momordica charantia][more]
XP_022140538.17.3e-19691.75heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Momordica charantia][more]
XP_022948040.12.1e-18285.29heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata][more]
BLAST of CsaV3_6G009370 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07810.21.4e-12768.02RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G47620.46.6e-9056.99RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.11.2e-8643.27RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G55550.35.4e-8442.89RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G14300.11.1e-6558.25RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CsaV3_6G009370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8W034|RNP1_ARATH2.0e-6458.25Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
sp|Q9C652|RBP1_ARATH3.3e-4648.24RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1[more]
sp|Q98SJ2|DAZP1_XENLA7.3e-4642.68DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1[more]
sp|O94432|YHKF_SCHPO3.6e-4543.09Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
sp|Q9VVE5|MSIR6_DROME2.3e-4447.28RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
BLAST of CsaV3_6G009370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDX2|A0A0A0KDX2_CUCSA1.1e-205100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110300 PE=4 SV=1[more]
tr|A0A1S3CKY6|A0A1S3CKY6_CUCME2.6e-20599.79heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350212... [more]
tr|A0A1Q3C2Z2|A0A1Q3C2Z2_CEPFO3.9e-15364.42RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18... [more]
tr|A0A0B0MSK2|A0A0B0MSK2_GOSAR9.2e-14768.78RNA-binding Musashi OS=Gossypium arboreum OX=29729 GN=F383_27058 PE=4 SV=1[more]
tr|A0A1U8LC95|A0A1U8LC95_GOSHI4.6e-14668.57heterogeneous nuclear ribonucleoprotein 1-like OS=Gossypium hirsutum OX=3635 GN=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034131DAZAP1_RRM2
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G009370.1CsaV3_6G009370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..78
e-value: 5.0E-24
score: 95.8
coord: 107..179
e-value: 7.0E-23
score: 92.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 108..165
e-value: 3.5E-15
score: 55.5
coord: 8..69
e-value: 1.1E-15
score: 57.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 106..183
score: 17.523
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..82
score: 17.302
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 103..181
e-value: 1.5E-24
score: 88.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..89
e-value: 2.2E-25
score: 90.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 462..476
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 444..476
NoneNo IPR availablePANTHERPTHR44291FAMILY NOT NAMEDcoord: 1..475
NoneNo IPR availablePANTHERPTHR44291:SF2RNA RECOGNITION MOTIF-CONTAINING PROTEINcoord: 1..475
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 8..78
e-value: 6.71842E-35
score: 124.235
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 104..183
e-value: 5.47467E-44
score: 149.823
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 3..102
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 99..204

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G009370CSPI06G09000Wild cucumber (PI 183967)cpicucB364
CsaV3_6G009370Cucsa.120420Cucumber (Gy14) v1cgycucB159
CsaV3_6G009370CmaCh20G006660Cucurbita maxima (Rimu)cmacucB0667
CsaV3_6G009370CmaCh02G002150Cucurbita maxima (Rimu)cmacucB0741
CsaV3_6G009370CmoCh20G006690Cucurbita moschata (Rifu)cmocucB0653
CsaV3_6G009370CmoCh02G002220Cucurbita moschata (Rifu)cmocucB0730
CsaV3_6G009370Cp4.1LG16g03810Cucurbita pepo (Zucchini)cpecucB0361
CsaV3_6G009370Cp4.1LG05g14060Cucurbita pepo (Zucchini)cpecucB0935
CsaV3_6G009370CsGy6G009120Cucumber (Gy14) v2cgybcucB298
CsaV3_6G009370Carg16091Silver-seed gourdcarcucB0382
CsaV3_6G009370Carg05143Silver-seed gourdcarcucB0847
CsaV3_6G009370Cla001412Watermelon (97103) v1cucwmB553
CsaV3_6G009370MELO3C025991Melon (DHL92) v3.5.1cucmeB431
CsaV3_6G009370ClCG02G009430Watermelon (Charleston Gray)cucwcgB471
CsaV3_6G009370Lsi10G000600Bottle gourd (USVL1VR-Ls)cuclsiB441
CsaV3_6G009370MELO3C025991.2Melon (DHL92) v3.6.1cucmedB421
CsaV3_6G009370Cla97C02G035780Watermelon (97103) v2cucwmbB460
CsaV3_6G009370Bhi10G001038Wax gourdcucwgoB629
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G009370Cucumber (Chinese Long) v3cuccucB214
CsaV3_6G009370Silver-seed gourdcarcucB0231
CsaV3_6G009370Cucurbita maxima (Rimu)cmacucB0632
CsaV3_6G009370Cucurbita moschata (Rifu)cmocucB0617
CsaV3_6G009370Cucurbita pepo (Zucchini)cpecucB0316
CsaV3_6G009370Wild cucumber (PI 183967)cpicucB411
CsaV3_6G009370Bottle gourd (USVL1VR-Ls)cuclsiB455
CsaV3_6G009370Melon (DHL92) v3.5.1cucmeB469
CsaV3_6G009370Melon (DHL92) v3.6.1cucmedB459
CsaV3_6G009370Watermelon (Charleston Gray)cucwcgB464
CsaV3_6G009370Watermelon (97103) v1cucwmB541
CsaV3_6G009370Watermelon (97103) v2cucwmbB450
CsaV3_6G009370Wax gourdcucwgoB579