Carg05143 (gene) Silver-seed gourd

Overview
NameCarg05143
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionheterogeneous nuclear ribonucleoprotein 1
LocationCucurbita_argyrosperma_scaffold_010 : 92434 .. 97594 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTGATTTTCACAAATCAAATTCTGTAAGAAAAAGTTCGGGACATAATTTACAGAGAAAGGATGAAAATGCCATCTCTCGCTGTCCTTATCATCGTGCATCCTCTCAGATCTTAGCTTTGCCAGATTTGGCTTTCTGGGTCTTCGATAATCGGTCGGTTTTCTGGAAATCTGGACTTCATTTTTCGATCTTCTGAGGAATTCAATTCAGCTTGGATCCCGTTAATCCTTCTTTTGATTCAAATGTTTTCTGGGTTTCTCAGGTTTGTTGAATTTTCGGTCGAGCAATTGATCGACGATGGATCCAGTGTTCCCAAATTGATTTTTACAATATCTGTTCTCTCGGGATATACATTTCCTGGATTGCCTCTTGATTCAAATAAGGTACTGCTTCTGTTATTGATTTGTTATTCACCGGCATTTGATTCAATTTCCTCCTCCTCTTTGAGCTTCATGAACTTACGGATTACAATTCTTCAGCTTATGTTTATAAACCGATCTTCTACTAGATTGAATCGCCATAGCTGATTTTGTCCCCCCACGAATTTTGGTCGACCCCCAGTTCATTATATTAACATCTGCAATCGATATTGAGAGTTTAAAATTCTTTTTCCTTTTTTATTTGAATCGAGTGGAAATGTATGAATGCTAGGACATCTGAGTGATATGGCTTGTGTTGCTGTGGTCTGTAGGAAAAAGGAAATGCAAACTGATAGCGGCAAGTTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGAACGTCTTAAAGAGTATTTCAGTGCCTTTGGTGAGGTTGTAGAAGCTGTGATTATGAAGGATCGGATCACAGGTCGCGGTCGTGGCTTCGGCTTTATTGTTTTTGTTGATCCAAATGTTGCAGATAGAGTTGTAAGGGAGAAGCATAATATTGATGGAAGAATGGTGAGTGTTAAACCTTAGATGTGTATCTCAGGACCTGCAAAGATAGCTCATGACTCGAAACTCGAAACGTTTTGTTGAGTATTTATTCTCTTCCTTTTCGAAATTTTTGATTCCGTGAAGACTGAATTTCTTTTCCATATTAGCGTTTCAGCTTGCCTTCAATCACAATAGTCTGCATTCGCCATTTTTGTGCTATTTGAACTCGAGCTTCATTGTTGAGTTTTCTTCATCCTCAGGTTGAGGCTAAAAGGGCTGTTCCCAGGAATGACCAGAACATTGTAGGTAGAACCAGTGGTACCATTAATGTTTCTCCTAGTGCTGGACGAACTAAAAAGATATTTGTTGGGGGCTTAGCATCGACTGTTACAGAGAGCGAATTCAAGAGCTATTTTGATCAATTTGGGACAATTACAGATGTTGTGGTGATGTACGACCACAATACTCTTCGACCCAGAGGATTCGGGTTTATTACATATGATTCCGAAGACGCAGTAGATAAGGTTCTTATCAAGACTTTCCATGAACTGAATGGAAAAATGGTTGAAGTTAAGCGTGCAGTTCCGAAAGAGTTGTCACCAGGTCCTAGCCGTAGTCCACTTGGTGGATACAATTATGGTCAGAGTAGGGTCAATAGCTTCCTTAATGGTTACACTCAGGGGTACAGTTCGAGTACAATTGGAAGCTATGGTGTTAGAATGGATGGTAGATTTAGTCCGGTTTCTAGTGGTCGAAGTGTATTCACTCCATTTGGTTCAGGTTATGGAATGGGAGTGAACTTTGAGATTGGTTTAAACCCGGGGTACGGTGGAGCTTCCAATTTTGCCAATAATCTCAACTACGGGCGGGGACTGAGCCCGTATTATACTGGTAATTCTGATAGGTTTAGCAACATAGGTTTTGAAAGTGGCAATGGAGGAAACTCATCCTTCTTCAGCTCAGCAACTCAAAACTTGTGGGGAAGTGGAGGGCTCAACAATGGTTCAAACTCTGCCAATTCCAATGCTCATTTGGGATCAGCAAGCGGTATCATTGGAGGAAATGCATTTGCCAATTCTGGAGTTAACTGGAGTAGTTCTGGAATCTCGTCTCAAGCGGGAGGAAATCATATTTTTAGTAACTCCGGGAGTCTAAATTATGGAGGTGTTGACAGTGGTTATACTCTTGGAGCTGGAGGGTATGGGAGGAACAGTGGTACCGTCTTGCCTCCAACGTCATCATTTTCTACCTCTGTTGGTTTTGACGGGTCCTTGGCCGATTTCTACAGTGCTAATTACAGCGATCCCACGTGGGGACCTTCCAATTTTGAAAGAGATGGATCTGGACCCATTGGTTATGGACTTGGCAATGCTGCTTCAGATGTCTCATCCAGAAGCTCTCCTGGTTTCATTGGTGGTCAAAGCGTTAATAGGAGGCAGTCGAGCAGAGGTTAGAGCCAATGATTCAAAATTTATGCAATGCCTCTTTCAATTTGTTTTAGTCGTATCTCCCGATTTCTCTCGTCACGAATTTTGTTTTCCAAATGCTCTGATCATGAATTATATTTTGTTTTTGCATCTCACCGAAAGCTATCATCGCACATTTCAATTCTGCACTTGATGATCAAGATCTTAGATAGCACATTTCACTAGTATACATGAATGTTTTGAGTTGCCAACCAAGAAAACTCATATTGTTAAGTTAGCTGCCATATTTCTACATTTTCTTTTATATAGTCAGAGTGGGAAAGATGTATGCTCAATATTGTCCTTTTCGTTATAAGAATGTTTGGTAGCTCCCAATGAACCTTATCATGAATGTCGGGATGTAAGGACCCAAATCCACCGCTAGCAGATATTGTCCTTTTTGGGGTTTCCCTTCAAGGTTTTTAAAACTTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCTCAACCAACATGGGATCTCACACGGGAGATATTTGGTGCTTGGATCTTGTGTTTGATAATATATTGTCTAATGACGTTAGATATGAGGAATTAAAACATTATTCCTGCATGTTGGTTTGTATTATTGCAATGTCTGGCTTAAGTGGCTGTTTTCTTGGGTTACCAGAAAAAAGAAGGAAACATGATTTGCATCAATTCAAATGGTTTTTTTCTTTTTCATGGATAAGTTTATTTATCTCATTGCCTTGTATATGATGATTGAACTTTTATTGGTCCTGTTTGTATGCTCTGTGTTCACATGTGCATATATGCGAGCCTGAAGCCGTGCGGCTCACTCATTTTAACTCAACAAGTATTAGTATTTAACTAATTCTAGGACATTGGTAGAATTTTCGTCTTTGACACACACTAGTAAGCATGGTTGTTCCTTCAAACAGCCCAAGTCACCGCTAGCAGATATTATCCTTTTTGGGCTTTTCCTTACGGACTTTCTCTCGAAGTCTTTAAAACGTGTCTCCTAGGGAGAGGTTTCCACACCCTTATAAAGAATTCTAAGTTCTTCTCCCCAACCGATGTGGGATCTCACGATTCGCCTCCCTTCAAGGTTCAGCGTCCTCACTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACTCCCAATCCACCCCCCTTCAAGGCCTAGCGTCCTTGTTGGCACACCGCCTCGTGTCCACCTCCTTCGGGGTTCGACCTCCTCGCTGGCACATTGTCCGATATCTGGCTCTAACACTGTAACAGCCCAAACCACTAGCAGATATTGTCCTCTTTGGGATTTCCCTTTCGGACTTCCCCTTAAGATATTTAAAACGTGTCTCCTAGGGAAAGGTTTCAACACCCTTATAAAGAATGCTAAGTTCTCCTCCCCAACCGATGTGGGATCCCACGTCATCACTCAAACCTAAAGTTGAGTAGTGAAATTATGCCTTTAGAATGTCCTAACGAGCGTACTGGGCATTAAGTAAATTTAGTACAGCCTCTTGGAAAGCTTTCATTAACAAGTGTCAGCTGAAATCACAAAACGCTACCAGATTATCTGTGATGTTGAATTGAATTTAGGATACCGAAGCTGAATGATCTCGTTGTAGCGTTATTCTTATTCCTTCTTTTATATATATGTACTTTTATGGTAAAAAGGAAATGAGATGCATTAGAAATGGAGTGAGAGAATATTCTCTGATATTAACTGCAGTCTCCTCCTCATTTTTGCTTCAGGAAACACTACCTAGGAATGATCGGATATGTCAACATAGTAGATGAAGATAATTGGTGAAGCATGTGAAGTTGCGGGCCAATCATAGAATATTCAGTTCAATTACCCTACAAAAAAAAAAAGGAAAAAAGAAGAATTATCTAAAGCTAACTGAGTGCAGATGCTGAGAACCAATCTTAAAGGTATTTAGAGCCACTTGGGATTTTGTGTCCAGGTTTGAGTTTTGATTAGAATTTGTTTTTTCTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTTTCCTCTTATATATGAGTGAGATGTAAAATCAGATTGCGGCAGTATAGCAAAATATGTATCATCATCATGCATCTTCAGTGAGGTGGGCATCCACAAAATATGATAGACTAAGCCTTTTTCTTTTCCCCTTGAATTAAGGTCACCCTTCTTTATTTTCAAGGTCAAGTTCATCATAATTGTAGCAGTAACGCCTTAGGCAAAGTTGTGAGCTTTGTTGAGGAATGCTCTTTGTTCCATCATTTTGTTTTGTTTGTGAACAGATTGTATCAGAGTTCCTCTTTTTCTTGAACTGTTTGTGTGAAAAAAAAAAAACATTCAAGGGATATCCATCTCGGCTCCTTATTATAACCACAAATTCGTGACTTGAAATTCTTGTTTGATTGATGCTTTTAGTTTCTGCTGCTCTGAATGTTGATGATTTATGAAAGGTGGAACAGGAACAATCTCAGATTCTTCTCATCTGAGTGCCCTGTTTTGTGGGGTTCCTTTTGTGTTCTAACTTTCTGATATGTCTTTTGGAATCTGCTGAGCATGCGGTGTGGCTTGGAATAGGTATTGTGTCATGCACTAGGACATGTCTGCTGGCATTGAAAATGGGGCTGTGAAGAGGAAAATGAGGGCAGCCTCATCACTCTGTGGCTTCCCAGGTGAATCCCATTAAGGAACACTGTTTGTGAAGAACATGAACAGATTTGACAGCTCAAACAGAGCCTTGTTTGCTTCTCTCTCTAAATTGCTTTACATCTGATTCTTTTATGCTTCTTCC

mRNA sequence

AATTTGATTTTCACAAATCAAATTCTGTAAGAAAAAGTTCGGGACATAATTTACAGAGAAAGGATGAAAATGCCATCTCTCGCTGTCCTTATCATCGTGCATCCTCTCAGATCTTAGCTTTGCCAGATTTGGCTTTCTGGGTCTTCGATAATCGGTTTGTTGAATTTTCGGTCGAGCAATTGATCGACGATGGATCCAGTGTTCCCAAATTGATTTTTACAATATCTGTTCTCTCGGGATATACATTTCCTGGATTGCCTCTTGATTCAAATAAGGAAAAAGGAAATGCAAACTGATAGCGGCAAGTTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGAACGTCTTAAAGAGTATTTCAGTGCCTTTGGTGAGGTTGTAGAAGCTGTGATTATGAAGGATCGGATCACAGGTCGCGGTCGTGGCTTCGGCTTTATTGTTTTTGTTGATCCAAATGTTGCAGATAGAGTTGTAAGGGAGAAGCATAATATTGATGGAAGAATGGTTGAGGCTAAAAGGGCTGTTCCCAGGAATGACCAGAACATTGTAGGTAGAACCAGTGGTACCATTAATGTTTCTCCTAGTGCTGGACGAACTAAAAAGATATTTGTTGGGGGCTTAGCATCGACTGTTACAGAGAGCGAATTCAAGAGCTATTTTGATCAATTTGGGACAATTACAGATGTTGTGGTGATGTACGACCACAATACTCTTCGACCCAGAGGATTCGGGTTTATTACATATGATTCCGAAGACGCAGTAGATAAGGTTCTTATCAAGACTTTCCATGAACTGAATGGAAAAATGGTTGAAGTTAAGCGTGCAGTTCCGAAAGAGTTGTCACCAGGTCCTAGCCGTAGTCCACTTGGTGGATACAATTATGGTCAGAGTAGGGTCAATAGCTTCCTTAATGGTTACACTCAGGGGTACAGTTCGAGTACAATTGGAAGCTATGGTGTTAGAATGGATGGTAGATTTAGTCCGGTTTCTAGTGGTCGAAGTGTATTCACTCCATTTGGTTCAGGTTATGGAATGGGAGTGAACTTTGAGATTGGTTTAAACCCGGGGTACGGTGGAGCTTCCAATTTTGCCAATAATCTCAACTACGGGCGGGGACTGAGCCCGTATTATACTGGTAATTCTGATAGGTTTAGCAACATAGGTTTTGAAAGTGGCAATGGAGGAAACTCATCCTTCTTCAGCTCAGCAACTCAAAACTTGTGGGGAAGTGGAGGGCTCAACAATGGTTCAAACTCTGCCAATTCCAATGCTCATTTGGGATCAGCAAGCGGTATCATTGGAGGAAATGCATTTGCCAATTCTGGAGTTAACTGGAGTAGTTCTGGAATCTCGTCTCAAGCGGGAGGAAATCATATTTTTAGTAACTCCGGGAGTCTAAATTATGGAGGTGTTGACAGTGGTTATACTCTTGGAGCTGGAGGGTATGGGAGGAACAGTGGTACCGTCTTGCCTCCAACGTCATCATTTTCTACCTCTGTTGGTTTTGACGGGTCCTTGGCCGATTTCTACAGTGCTAATTACAGCGATCCCACGTGGGGACCTTCCAATTTTGAAAGAGATGGATCTGGACCCATTGGTTATGGACTTGGCAATGCTGCTTCAGATGTCTCATCCAGAAGCTCTCCTGGTTTCATTGGTGGTCAAAGCGTTAATAGGAGGCAGTCGAGCAGAGGAAACACTACCTAGGAATGATCGGATATGTCAACATAGTAGATGAAGATAATTGGTGAAGCATGTGAAGTTGCGGGCCAATCATAGAATATTCAGTTCAATTACCCTACAAAAAAAAAAAGGAAAAAAGAAGAATTATCTAAAGCTAACTGAGTGCAGATGCTGAGAACCAATCTTAAAGGTATTGTGTCATGCACTAGGACATGTCTGCTGGCATTGAAAATGGGGCTGTGAAGAGGAAAATGAGGGCAGCCTCATCACTCTGTGGCTTCCCAGGTGAATCCCATTAAGGAACACTGTTTGTGAAGAACATGAACAGATTTGACAGCTCAAACAGAGCCTTGTTTGCTTCTCTCTCTAAATTGCTTTACATCTGATTCTTTTATGCTTCTTCC

Coding sequence (CDS)

ATGCAAACTGATAGCGGCAAGTTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGAACGTCTTAAAGAGTATTTCAGTGCCTTTGGTGAGGTTGTAGAAGCTGTGATTATGAAGGATCGGATCACAGGTCGCGGTCGTGGCTTCGGCTTTATTGTTTTTGTTGATCCAAATGTTGCAGATAGAGTTGTAAGGGAGAAGCATAATATTGATGGAAGAATGGTTGAGGCTAAAAGGGCTGTTCCCAGGAATGACCAGAACATTGTAGGTAGAACCAGTGGTACCATTAATGTTTCTCCTAGTGCTGGACGAACTAAAAAGATATTTGTTGGGGGCTTAGCATCGACTGTTACAGAGAGCGAATTCAAGAGCTATTTTGATCAATTTGGGACAATTACAGATGTTGTGGTGATGTACGACCACAATACTCTTCGACCCAGAGGATTCGGGTTTATTACATATGATTCCGAAGACGCAGTAGATAAGGTTCTTATCAAGACTTTCCATGAACTGAATGGAAAAATGGTTGAAGTTAAGCGTGCAGTTCCGAAAGAGTTGTCACCAGGTCCTAGCCGTAGTCCACTTGGTGGATACAATTATGGTCAGAGTAGGGTCAATAGCTTCCTTAATGGTTACACTCAGGGGTACAGTTCGAGTACAATTGGAAGCTATGGTGTTAGAATGGATGGTAGATTTAGTCCGGTTTCTAGTGGTCGAAGTGTATTCACTCCATTTGGTTCAGGTTATGGAATGGGAGTGAACTTTGAGATTGGTTTAAACCCGGGGTACGGTGGAGCTTCCAATTTTGCCAATAATCTCAACTACGGGCGGGGACTGAGCCCGTATTATACTGGTAATTCTGATAGGTTTAGCAACATAGGTTTTGAAAGTGGCAATGGAGGAAACTCATCCTTCTTCAGCTCAGCAACTCAAAACTTGTGGGGAAGTGGAGGGCTCAACAATGGTTCAAACTCTGCCAATTCCAATGCTCATTTGGGATCAGCAAGCGGTATCATTGGAGGAAATGCATTTGCCAATTCTGGAGTTAACTGGAGTAGTTCTGGAATCTCGTCTCAAGCGGGAGGAAATCATATTTTTAGTAACTCCGGGAGTCTAAATTATGGAGGTGTTGACAGTGGTTATACTCTTGGAGCTGGAGGGTATGGGAGGAACAGTGGTACCGTCTTGCCTCCAACGTCATCATTTTCTACCTCTGTTGGTTTTGACGGGTCCTTGGCCGATTTCTACAGTGCTAATTACAGCGATCCCACGTGGGGACCTTCCAATTTTGAAAGAGATGGATCTGGACCCATTGGTTATGGACTTGGCAATGCTGCTTCAGATGTCTCATCCAGAAGCTCTCCTGGTTTCATTGGTGGTCAAAGCGTTAATAGGAGGCAGTCGAGCAGAGGAAACACTACCTAG

Protein sequence

MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVADRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRSVFTPFGSGYGMGVNFEIGLNPGYGGASNFANNLNYGRGLSPYYTGNSDRFSNIGFESGNGGNSSFFSSATQNLWGSGGLNNGSNSANSNAHLGSASGIIGGNAFANSGVNWSSSGISSQAGGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANYSDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT
Homology
[Close]
BLAST of Carg05143 vs. NCBI nr
Match: XP_022948040.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 786.2 bits (2029), Expect = 6.3e-224
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES
Sbjct: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG 300
           VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360
           GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA
Sbjct: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360

Query: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANY 420
           GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANY
Sbjct: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANY 420

Query: 421 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
           SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT
Sbjct: 421 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 474

[Close]
BLAST of Carg05143 vs. NCBI nr
Match: XP_022970997.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 782.3 bits (2019), Expect = 9.1e-223
Identity = 472/474 (99.58%), Postives = 473/474 (99.79%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES
Sbjct: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSG+S
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGQS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG 300
           VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360
           GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA
Sbjct: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360

Query: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANY 420
           GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNS TVLPPTSSFSTSVGFDGSLADFYSANY
Sbjct: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSSTVLPPTSSFSTSVGFDGSLADFYSANY 420

Query: 421 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
           SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT
Sbjct: 421 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 474

[Close]
BLAST of Carg05143 vs. NCBI nr
Match: XP_023534493.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 778.1 bits (2008), Expect = 1.7e-221
Identity = 469/474 (98.95%), Postives = 470/474 (99.16%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES
Sbjct: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYD+EDAVDKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDNEDAVDKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG 300
           VFTPFGSGYGMGVNFEIGLNPGYGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NG
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360
           GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA
Sbjct: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360

Query: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANY 420
           GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANY
Sbjct: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTSVGFDGSLADFYSANY 420

Query: 421 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
           SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT
Sbjct: 421 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 474

[Close]
BLAST of Carg05143 vs. NCBI nr
Match: XP_022140537.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Momordica charantia])

HSP 1 Score: 704.9 bits (1818), Expect = 1.8e-199
Identity = 431/475 (90.74%), Postives = 449/475 (94.53%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQTDSGKLFVGGISWDTDEERLKEYFSAFG+VVEAVIMKDR TGRGRGFGFIVF D ++A
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGDVVEAVIMKDRTTGRGRGFGFIVFADSSIA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRV+REKHNIDGRMVEAKRAVPRNDQNIVGRTSG+INVSP  GRT+KIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EFK+YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSE+AV+KVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIG YGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG 300
           VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 300

Query: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360
           GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SQ 
Sbjct: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQG 360

Query: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTS-VGFDGSLADFYSAN 420
           GG+++FSN+G+LNYGGVDS Y+LGAGGYGRN+GTVLPPTSSF TS VGFDG  ADFYSA 
Sbjct: 361 GGSNVFSNTGNLNYGGVDSSYSLGAGGYGRNTGTVLPPTSSFPTSTVGFDGPFADFYSAG 420

Query: 421 YSDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
           Y DPTW  SNFERDGSGP GYGLG+AASDVSSRSSPGFIG  SVNRRQS+RGNTT
Sbjct: 421 YGDPTWRSSNFERDGSGPFGYGLGSAASDVSSRSSPGFIGAHSVNRRQSNRGNTT 475

[Close]
BLAST of Carg05143 vs. NCBI nr
Match: XP_022140538.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Momordica charantia])

HSP 1 Score: 699.1 bits (1803), Expect = 1.0e-197
Identity = 428/472 (90.68%), Postives = 446/472 (94.49%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQTDSGKLFVGGISWDTDEERLKEYFSAFG+VVEAVIMKDR TGRGRGFGFIVF D ++A
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGDVVEAVIMKDRTTGRGRGFGFIVFADSSIA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRV+REKHNIDGRMVEAKRAVPRNDQNIVGRTSG+INVSP  GRT+KIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EFK+YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSE+AV+KVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIG YGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGNG 300
           VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 300

Query: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQA 360
           GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SQ 
Sbjct: 301 GNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQG 360

Query: 361 GGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTS-VGFDGSLADFYSAN 420
           GG+++FSN+G+LNYGGVDS Y+LGAGGYGRN+GTVLPPTSSF TS VGFDG  ADFYSA 
Sbjct: 361 GGSNVFSNTGNLNYGGVDSSYSLGAGGYGRNTGTVLPPTSSFPTSTVGFDGPFADFYSAG 420

Query: 421 YSDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRG 472
           Y DPTW  SNFERDGSGP GYGLG+AASDVSSRSSPGFIG  SVNRRQS+RG
Sbjct: 421 YGDPTWRSSNFERDGSGPFGYGLGSAASDVSSRSSPGFIGAHSVNRRQSNRG 472

[Close]
BLAST of Carg05143 vs. TAIR10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 436.4 bits (1121), Expect = 2.2e-122
Identity = 306/491 (62.32%), Postives = 361/491 (73.52%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQ+D+GKLF+GGISWDT+EERLKEYFS+FGEV+EAVI+KDR TGR RGFGF+VF DP VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRT-SGTINVSPSA-GRTKKIFVGGLASTVT 120
           + V+ EKHNIDGR+VEAK+AVPR+DQN+V R+ S +I  SP   GRT+KIFVGGL S+VT
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120

Query: 121 ESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEV 180
           ES+FK+YF+QFGT TDVVVMYDHNT RPRGFGFITYDSE+AV+KVL+KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180

Query: 181 KRAVPKELSPGPSRSPLG-GYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSS 240
           KRAVPKELSPGPSRSPLG GY+YG +RVN+ LNGY QG++ + +G YG+RMDGRFSPV +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240

Query: 241 GRSVFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXES 300
           GRS F  + SGYGM VNF+ GL  G+ G  XXXXXXXXXXXXXXXXXXXXX         
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTXXXXXXXXXXXXXXXXXXXXXRFGPAVGYE 300

Query: 301 GNGGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIS 360
           G                      XXXXXXXXXXXXXXXXXXXXXXXXXX        G++
Sbjct: 301 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGPFGNSGVN 360

Query: 361 --SQAGGNHIFSNSG-SLNYGG-VDSGYTLGAGGY-GRNSG-TVLPPTSSFST-----SV 420
             +  GGN+  SN      YGG  +SG+ LG GGY  RN G     P+SSFS+     + 
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420

Query: 421 GFD-GSLADFY--SANYSDPTWGPSNFERDGSGPIGYGLGNA--ASDVSSR-SSPGFIGG 472
           G+D   LA+FY   A YSDPTW     E +G  P  YG+G    +SDVS+R SSPG++G 
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480

[Close]
BLAST of Carg05143 vs. TAIR10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-88
Identity = 177/344 (51.45%), Postives = 223/344 (64.83%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           M+ +S KLF+GGISW+T E+RL++YF +FGEV+EAVIMKDR TGR RGFGF+VF DPNVA
Sbjct: 1   MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60

Query: 61  DRVVREKHNIDGR----------------------MVEAKRAVPRNDQNIVGRTSGTINV 120
           +RVV  KH IDG+                      +VEAK+AVPR+D  +  +++ ++  
Sbjct: 61  ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG 120

Query: 121 SPSAGRTKKIFVGGLASTVTESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSED 180
           SP    +KKIFVGGLAS+VTE+EFK YF QFG ITDVVVMYDH T RPRGFGFI+YDSE+
Sbjct: 121 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 180

Query: 181 AVDKVLIKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSS 240
           AVDKVL KTFHELNGKMVEVK AVPK+++    R+ +   ++G SR++S LN YTQG+S 
Sbjct: 181 AVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 240

Query: 241 STIGSYGVRMDGRFSPVSSGRSVFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXX 300
           S I  YGV+ + R+SP    R  F+PFG GYG+ +NFE      YG              
Sbjct: 241 SPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGS-----GSSGGFGR 300

Query: 301 XXXXXXXXXXXXXXXXXESGNG--GNSSFFSSATQN-LWGSGGL 320
                            ESG    GN S  ++A +N LWG+GGL
Sbjct: 301 PFSPGYAASLGRFGSQMESGGASVGNGSVLNAAPKNHLWGNGGL 339

[Close]
BLAST of Carg05143 vs. TAIR10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 318.2 bits (814), Expect = 8.8e-87
Identity = 217/493 (44.02%), Postives = 275/493 (55.78%), Query Frame = 0 

Query: 3   TDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVADR 62
           +D GKLF+GGISWDTDEERL+EYF  +G++VEAVIM+DR TGR RGFGFIVF DP+VA+R
Sbjct: 12  SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71

Query: 63  VVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTIN-VSPSAG------RTKKIFVGGLAS 122
           V+ +KH IDGR VEAK+AVPR+DQ ++ R +  ++ +SPS G      RTKKIFVGGL S
Sbjct: 72  VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131

Query: 123 TVTESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKM 182
           ++TE+EFK+YFDQFGTI DVVVMYDHNT RPRGFGFIT+DSE++VD VL KTFHELNGKM
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191

Query: 183 VEVKRAVPKEL-SPGPSRSPLGGY--NYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRF 242
           VEVKRAVPKEL S  P+RSPL GY  NYG                            GRF
Sbjct: 192 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVXXXXXXXXXXXXXXXXXXXXXXXSA-GRF 251

Query: 243 SPVSSGRSVFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXX 302
           SP+ SGR+ F    S +G+G+N E+ LN  + G                           
Sbjct: 252 SPIGSGRNAF----SSFGLGLNQELNLNSNFDGNTLGYSRIPGNQYFNSASPNRYNSPI- 311

Query: 303 XXXESGNGGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
                G     S ++ + ++LWG+                                    
Sbjct: 312 -----GYNRGDSAYNPSNRDLWGN------------------------------------ 371

Query: 363 XXGISSQAGGN---HIFSNSGSLNYGGVDSGYTLGAGGYGRN--SGTVLPPTSSFSTSVG 422
               SS  G N    + +N G+     V S       GYGR+  +G+ L   S    + G
Sbjct: 372 -RSDSSGPGWNLGVSVGNNRGNWGLSSVVS----DNNGYGRSYGAGSGLSGLSFAGNTNG 431

Query: 423 FDGSLADFY--SANYSDPTW------GPSNFERDG-SGPIGYGLGNAASDVSSRSSPGFI 472
           FDGS+ + Y  S+ YSD TW        S+ E DG S   G+G+ N  SD S+ +S G+ 
Sbjct: 432 FDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYS 452

[Close]
BLAST of Carg05143 vs. TAIR10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 313.5 bits (802), Expect = 2.2e-85
Identity = 216/497 (43.46%), Postives = 278/497 (55.94%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           M++D GKLF+GGISWDTDEERL++YFS +G+VVEAVIM+DR TGR RGFGFIVF DP V+
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTIN----VSPSAGRTKKIFVGGLAST 120
           +RV+ +KH IDGR VEAK+AVPR+DQ ++ R +  I+    V    GRTKKIFVGGL S+
Sbjct: 61  ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120

Query: 121 VTESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMV 180
           +TE EFK+YFDQFGTI DVVVMYDHNT RPRGFGFIT+DS+DAVD+VL KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180

Query: 181 EVKRAVPKELSPGPS-RSPL-GGYNYG----QSRVNSFLNGYTQGYS-SSTIGSYGVRMD 240
           EVKRAVPKE+SP  + RSPL  G NYG    +   NS+ N +  G    +++G  G    
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVG---- 240

Query: 241 GRFSPV-SSGRSVFTPFGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXX 300
            RFSPV  SGR+  + F  G G+  +  + LNP   G                       
Sbjct: 241 RRFSPVIGSGRNAVSAF--GLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNR 300

Query: 301 XXXXXXXESGNGGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                    G+    S ++S  ++LWG+                                
Sbjct: 301 YTSPI----GHNRTESPYNSNNRDLWGN-------------------------------- 360

Query: 361 XXXXXXGISSQAGGNHIFSNSGSLNYGGVDSGYTLG--AGGYGRNSGTVLPPTSSFSTSV 420
                   ++  G N   SN  +    G+ S   +     G+GRN GT    +S  S+S 
Sbjct: 361 -----RTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGT----SSGLSSSP 420

Query: 421 --GFDGSLADFYSAN--YSDPTW------GPSNFERDG-SGPIGYGLGNAASDVSSRSSP 473
             GF+GS+ + Y     YSD TW        S+ E D  S   GY + N  SD S+    
Sbjct: 421 FNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPE 446

[Close]
BLAST of Carg05143 vs. TAIR10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 250.4 bits (638), Expect = 2.3e-66
Identity = 115/194 (59.28%), Postives = 157/194 (80.93%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           M +D GKLFVGGISW+TDE++L+E+F+ +GEV +A++M+D++TGR RGFGF++F DP+V 
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAG-----RTKKIFVGGLAS 120
           DRV++EKH+ID R V+ KRA+ R +Q + GRT G +N S S+G     +TKKIFVGGL  
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRT-GNLNTSRSSGGDAYNKTKKIFVGGLPP 120

Query: 121 TVTESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKM 180
           T+T+ EF+ YF+ +G +TDV +MYD  T RPRGFGF+++DSEDAVD VL KTFH+L+GK 
Sbjct: 121 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 180

Query: 181 VEVKRAVPKELSPG 190
           VEVKRA+PK+ +PG
Sbjct: 181 VEVKRALPKDANPG 193

[Close]
BLAST of Carg05143 vs. Swiss-Prot
Match: sp|Q8W034|RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.1e-65
Identity = 115/194 (59.28%), Postives = 157/194 (80.93%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           M +D GKLFVGGISW+TDE++L+E+F+ +GEV +A++M+D++TGR RGFGF++F DP+V 
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAG-----RTKKIFVGGLAS 120
           DRV++EKH+ID R V+ KRA+ R +Q + GRT G +N S S+G     +TKKIFVGGL  
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRT-GNLNTSRSSGGDAYNKTKKIFVGGLPP 120

Query: 121 TVTESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKM 180
           T+T+ EF+ YF+ +G +TDV +MYD  T RPRGFGF+++DSEDAVD VL KTFH+L+GK 
Sbjct: 121 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 180

Query: 181 VEVKRAVPKELSPG 190
           VEVKRA+PK+ +PG
Sbjct: 181 VEVKRALPKDANPG 193

[Close]
BLAST of Carg05143 vs. Swiss-Prot
Match: sp|Q9C652|RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.5e-47
Identity = 99/199 (49.75%), Postives = 136/199 (68.34%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           M  D  KLFVGGI+ +T EE LK+YFS +G V+EAV+ K+++TG+ RGFGF+ F +    
Sbjct: 1   MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRND-----------QNIVGRTSGTINVSPSAG---RTK 120
            + +R+ H I G+ V+ ++A+ +++           +  V + +G +    S G   RTK
Sbjct: 61  VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120

Query: 121 KIFVGGLASTVTESEFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIK 180
           KIFVGGL+S  TE EFKSYF++FG  TDVVVM+D  T RPRGFGF+TYDSED+V+ V+  
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180

Query: 181 TFHELNGKMVEVKRAVPKE 186
            FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199

[Close]
BLAST of Carg05143 vs. Swiss-Prot
Match: sp|Q98SJ2|DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-45
Identity = 104/239 (43.51%), Postives = 139/239 (58.16%), Query Frame = 0 

Query: 6   GKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVADRVVR 65
           GKLFVGG+ W T +E L+ YFS +GEVV+ VIMKD+ T + RGFGF+ F DPN    V+ 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 66  EK-HNIDGRMVEAKRAVPRNDQNIVGR-TSGTINVSPSA--GRTKKIFVGGLASTVTESE 125
            + H +DGR ++ K   PR  Q    R   G     P     R+ KIFVGG+     E+E
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129

Query: 126 FKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKRA 185
            K YF++FG +T+VV++YD    RPRGFGFIT++ E +VD+ +   FH++ GK VEVKRA
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 189

Query: 186 VPKELSPGPSRSPLGGYNYGQSRVNSFLNGYT-------QGYS--------SSTIGSYG 226
            P++ S   +  P G   +G   + S  NG+T       QGYS          TIG YG
Sbjct: 190 EPRD-SKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGYG 247

[Close]
BLAST of Carg05143 vs. Swiss-Prot
Match: sp|Q9VVE5|MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 183.3 bits (464), Expect = 6.1e-45
Identity = 90/184 (48.91%), Postives = 119/184 (64.67%), Query Frame = 0 

Query: 4   DSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVADRV 63
           D GK+F+GG+SW T  E L++YF  +G++ EA++MKD  T R RGFGF+ F DPN  D+V
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 64  VRE-KHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTESEF 123
           + +  H +DG+ V+ K A PR                    RTKKIFVGGL++  T  + 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPRRAH------------PKMVTRTKKIFVGGLSAPTTLEDV 146

Query: 124 KSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKRAV 183
           KSYF+QFG I D ++M+D  T R RGFGF+T+ SED VDKV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 198

Query: 184 PKEL 187
           PKE+
Sbjct: 207 PKEV 198

[Close]
BLAST of Carg05143 vs. Swiss-Prot
Match: sp|O94432|YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-43
Identity = 76/181 (41.99%), Postives = 123/181 (67.96%), Query Frame = 0 

Query: 4   DSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVADRV 63
           + GK+F+GG++W+T ++ L++YF  FGEV++  +M+D  TGR RGFGF+ F +P   + V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220

Query: 64  VREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTESEFK 123
           + ++H++DG++++ KRA+PR +Q                 +T K+FVGG+    TE EF+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFR 280

Query: 124 SYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKRAVP 183
           ++F+QFG + D  +M D +T RPRGFGF+TY++E AV+  + + +  ++GK VEVKRA P
Sbjct: 281 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 325

Query: 184 K 185
           K
Sbjct: 341 K 325

[Close]
BLAST of Carg05143 vs. TrEMBL
Match: tr|A0A1S3CKY6|A0A1S3CKY6_CUCME (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103502128 PE=4 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 5.7e-181
Identity = 407/476 (85.50%), Postives = 426/476 (89.50%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF+A+G+VVEAVIMKDR TGRGRGFGFIVF DP+VA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRV+REKHNIDGRMVEAKRAVPRNDQNIVGRTSG+INVSP  GRT+KIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EFK+YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSE+AV+KVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIG YGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGYGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGN 300
           VFTPFGSGYGMGVNF+IGLNPGYGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 GGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQ 360
                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 AGGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTS-VGFDGSLADFYSA 420
              N++FSNSG+LNYGGVDS Y+LGAGGYGRNSGTVLPPTSSF TS VGFDG  ADFYSA
Sbjct: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 NYSDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
            Y DPTW  SNFERDGSGP GYGLG+AASDVS+RSSPGFIGG SVNRRQS+RGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]
BLAST of Carg05143 vs. TrEMBL
Match: tr|A0A0A0KDX2|A0A0A0KDX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110300 PE=4 SV=1)

HSP 1 Score: 641.3 bits (1653), Expect = 1.7e-180
Identity = 406/476 (85.29%), Postives = 426/476 (89.50%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF+A+G+VVEAVIMKDR TGRGRGFGFIVF DP+VA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRV+REKHNIDGRMVEAKRAVPRNDQNIVGRTSG+INVSP  GRT+KIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EFK+YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSE+AV+KVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIG YGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGYGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGN 300
           VFTPFGSGYGMGVNF+IGLNPGYGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 GGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQ 360
                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 AGGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFSTS-VGFDGSLADFYSA 420
              N++FSNSG+LNYGGVDS Y+LGAGGYGRNSGTVLPPTSSF TS VGFDG  ADFYSA
Sbjct: 361 XXXNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 NYSDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
            Y DPTW  SNFERDGSGP GYGLG+AASDVS+RSSPGFIGG SVNRRQS+RGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]
BLAST of Carg05143 vs. TrEMBL
Match: tr|A0A1Q3C2Z2|A0A1Q3C2Z2_CEPFO (RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18075 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 3.4e-157
Identity = 314/475 (66.11%), Postives = 365/475 (76.84%), Query Frame = 0 

Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVA 60
           MQ+D+GKLF+GGISWDT+EERLK+YFSAFGEV+EAVIMKDR TGR RGFGF+VF DP VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKDYFSAFGEVMEAVIMKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRVVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTES 120
           DRV++EKHNIDGRMVEAK+AVPR+DQN++ R S +I  SP  GRT+KIFVGGLASTVTES
Sbjct: 61  DRVIKEKHNIDGRMVEAKKAVPRDDQNMMSRNSSSIQGSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKSYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKR 180
           EF+ YFDQFGTITDVVVMYDHNT RPRGFGFITYDSE+AVDKVL+KTFHELNGKMVEVKR
Sbjct: 121 EFRKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRS 240
           AVPKELSPGPSRSPLGGYNYG SRVNSFL+GYTQGY+ S IG YG+RMDGRFSPV  GRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGMSRVNSFLSGYTQGYTPSAIGGYGLRMDGRFSPVPGGRS 240

Query: 241 VFTPFGSGYGMGVNFEIGLNPGY-GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGN 300
            F PFG+GYG+G+NFE GL+  Y G                               +  N
Sbjct: 241 GFPPFGNGYGIGMNFEPGLSSSYEGNANFNSNLSYGRGLNPYFIGNANRLVNSIGYDGSN 300

Query: 301 GGNSSFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQ 360
           GGN+SFFSS T+NLWG+G LNXXXXXXXXXXXXXXXXXXXX               I  Q
Sbjct: 301 GGNTSFFSSVTRNLWGNGDLNXXXXXXXXXXXXXXXXXXXXGSNFGNSGANLRSSAILPQ 360

Query: 361 AGGNHIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSFS-TSVGFDGSLADFYSA 420
            GGN+  +N+ +  YGG ++ + LG G YGRNSGT + PTSS++ ++ GFDG+ +D Y +
Sbjct: 361 GGGNNATNNNINFEYGGGENSFGLGTGEYGRNSGTNVAPTSSYAGSNSGFDGAFSDLYES 420

Query: 421 N--YSDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRG 472
              Y D TW  SN E D SG  GYG GNA SDV+++SSPG++GG SVN+RQS+RG
Sbjct: 421 GSVYGDSTWRSSNSEHDASGSFGYGFGNATSDVATKSSPGYVGGYSVNKRQSNRG 475

[Close]
BLAST of Carg05143 vs. TrEMBL
Match: tr|A0A0B0MSK2|A0A0B0MSK2_GOSAR (RNA-binding Musashi OS=Gossypium arboreum OX=29729 GN=F383_27058 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 8.6e-153
Identity = 339/474 (71.52%), Postives = 386/474 (81.43%), Query Frame = 0 

Query: 5   SGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVADRVV 64
           +GKLF+GGISWDT+EERLKEYFS FGEVVEAVIMKDR TGR RGFGF+VF DP VA+RV+
Sbjct: 4   NGKLFIGGISWDTNEERLKEYFSTFGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAERVI 63

Query: 65  REKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTESEFKS 124
            EKHNIDGRMVEAK+AVPR+DQNI+ R++ + + SP  GRTKKIFVGGLASTVTES+FK 
Sbjct: 64  LEKHNIDGRMVEAKKAVPRDDQNIMSRSTSSTHGSPGPGRTKKIFVGGLASTVTESDFKK 123

Query: 125 YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKRAVPK 184
           YFDQFG ITDVVVMYDHNT RPRGFGFITYD E+AV+KVL+K FHELNGKMVEVKRAVPK
Sbjct: 124 YFDQFGNITDVVVMYDHNTQRPRGFGFITYDLEEAVEKVLLKNFHELNGKMVEVKRAVPK 183

Query: 185 ELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRSVFTP 244
           ELSPGPSRSPL GYNYG +RVNSFLNGYTQGY+ S++G YG+RMDGRFSP++ GRSVF P
Sbjct: 184 ELSPGPSRSPLSGYNYGLNRVNSFLNGYTQGYTPSSVGGYGLRMDGRFSPIAGGRSVFPP 243

Query: 245 FGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESG-NGGNS 304
           FGSGYGMG+NFE GLNP    XXXXXXXXXXXXXX                  G  GGN+
Sbjct: 244 FGSGYGMGMNFEPGLNPXXXXXXXXXXXXXXXXXXSPYYIGNNNRFGSPIGCGGTTGGNT 303

Query: 305 SFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQAGGN 364
           SFFSS T+NLWG+GGLN  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ISSQ GGN
Sbjct: 304 SFFSSVTRNLWGNGGLN-YXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAISSQVGGN 363

Query: 365 HIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSF-STSVGFDGSLADFY--SANY 424
           ++ SNS +  YG  D+ + LG  GYGRNSGT + PTSS+ + + G+DG+ AD Y  ++ Y
Sbjct: 364 NVSSNSANFAYGTGDNSFGLGTAGYGRNSGTNVAPTSSYVALNGGYDGAFADIYGGASVY 423

Query: 425 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
            D TW  S  E+D SG  GY LG AASDVS +SSPG++GG SVNRRQS+RG T+
Sbjct: 424 GDTTWRSSTSEQDDSGSFGYVLGGAASDVSGKSSPGYVGGYSVNRRQSNRGKTS 476

[Close]
BLAST of Carg05143 vs. TrEMBL
Match: tr|A0A2P5Y5S0|A0A2P5Y5S0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA09687 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 7.3e-152
Identity = 331/474 (69.83%), Postives = 380/474 (80.17%), Query Frame = 0 

Query: 5   SGKLFVGGISWDTDEERLKEYFSAFGEVVEAVIMKDRITGRGRGFGFIVFVDPNVADRVV 64
           +GKLF+GGISWDT+EERLKEYFS FGEVVEAVIMKDR TGR RGFGF+VF DP VA+RV+
Sbjct: 4   NGKLFIGGISWDTNEERLKEYFSTFGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAERVI 63

Query: 65  REKHNIDGRMVEAKRAVPRNDQNIVGRTSGTINVSPSAGRTKKIFVGGLASTVTESEFKS 124
            EKHNIDGRMVEAK+AVPR+DQNI+ R++ + + S   GRTKKIFVGGLASTVTES+FK 
Sbjct: 64  LEKHNIDGRMVEAKKAVPRDDQNIMSRSTSSTHGSTGPGRTKKIFVGGLASTVTESDFKK 123

Query: 125 YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEDAVDKVLIKTFHELNGKMVEVKRAVPK 184
           YFDQFG ITDVVVMYDHNT RPRGFGFITYD E+AV+KVL+K FHELNGKMVEVKRAVPK
Sbjct: 124 YFDQFGNITDVVVMYDHNTQRPRGFGFITYDLEEAVEKVLLKNFHELNGKMVEVKRAVPK 183

Query: 185 ELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGSYGVRMDGRFSPVSSGRSVFTP 244
           ELSPGPSRSPL GYNYG +RVNSFLNGYTQGY+ S++G YG+RMDGRFSP++ GR VF P
Sbjct: 184 ELSPGPSRSPLSGYNYGLNRVNSFLNGYTQGYTPSSVGGYGLRMDGRFSPIAGGRRVFPP 243

Query: 245 FGSGYGMGVNFEIGLNPGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESG-NGGNS 304
           FGSGYGMG+NFE GLNP +  XXXXXXXXXXXXX                   G  GGN+
Sbjct: 244 FGSGYGMGMNFEPGLNPSFXXXXXXXXXXXXXXXLSPYYIGNNNRFGSPIGCGGTTGGNT 303

Query: 305 SFFSSATQNLWGSGGLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISSQAGGN 364
           SFFSS T+NLWG+GGLN       XXXXXXXXXXXXXXXXXXXXXXXXXX  ISSQ GGN
Sbjct: 304 SFFSSVTRNLWGNGGLN-YNTNAAXXXXXXXXXXXXXXXXXXXXXXXXXXSAISSQVGGN 363

Query: 365 HIFSNSGSLNYGGVDSGYTLGAGGYGRNSGTVLPPTSSF-STSVGFDGSLADFY--SANY 424
           ++ SNS +  YG  D+ + LG  GYGRNSGT + PTSS+ +++ G+DG+ AD Y  ++ Y
Sbjct: 364 NVSSNSANFAYGTGDNSFGLGTAGYGRNSGTNVAPTSSYVASNGGYDGAFADIYGGASVY 423

Query: 425 SDPTWGPSNFERDGSGPIGYGLGNAASDVSSRSSPGFIGGQSVNRRQSSRGNTT 475
            D TW  S  E+D SG  GY LG AASDVS +SSPG++GG SVNRRQS+RG T+
Sbjct: 424 VDTTWRSSTSEQDDSGSFGYVLGGAASDVSGKSSPGYVGGYSVNRRQSNRGKTS 476

The following BLAST results are available for this feature:
BLAST of Carg05143 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948040.16.3e-224100.00heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata][more]
XP_022970997.19.1e-22399.58heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima][more]
XP_023534493.11.7e-22198.95heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022140537.11.8e-19990.74heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Momordica charantia][more]
XP_022140538.11.0e-19790.68heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Momordica charantia][more]
BLAST of Carg05143 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07810.22.2e-12262.32RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G47620.42.1e-8851.45RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.18.8e-8744.02RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G55550.32.2e-8543.46RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G14300.12.3e-6659.28RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg05143 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8W034|RNP1_ARATH4.1e-6559.28Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
sp|Q9C652|RBP1_ARATH6.5e-4749.75RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1[more]
sp|Q98SJ2|DAZP1_XENLA1.2e-4543.51DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1[more]
sp|Q9VVE5|MSIR6_DROME6.1e-4548.91RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
sp|O94432|YHKF_SCHPO2.0e-4341.99Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
BLAST of Carg05143 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CKY6|A0A1S3CKY6_CUCME5.7e-18185.50heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350212... [more]
tr|A0A0A0KDX2|A0A0A0KDX2_CUCSA1.7e-18085.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110300 PE=4 SV=1[more]
tr|A0A1Q3C2Z2|A0A1Q3C2Z2_CEPFO3.4e-15766.11RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18... [more]
tr|A0A0B0MSK2|A0A0B0MSK2_GOSAR8.6e-15371.52RNA-binding Musashi OS=Gossypium arboreum OX=29729 GN=F383_27058 PE=4 SV=1[more]
tr|A0A2P5Y5S0|A0A2P5Y5S0_GOSBA7.3e-15269.83Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA09687 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034131DAZAP1_RRM2
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05143-RACarg05143-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..78
e-value: 8.4E-23
score: 91.8
coord: 107..179
e-value: 3.0E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 8..69
e-value: 5.6E-15
score: 54.8
coord: 108..165
e-value: 1.1E-14
score: 53.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..82
score: 17.114
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 106..183
score: 17.114
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 102..181
e-value: 4.0E-24
score: 86.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..89
e-value: 3.1E-25
score: 90.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 441..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 446..474
NoneNo IPR availablePANTHERPTHR44291FAMILY NOT NAMEDcoord: 1..473
NoneNo IPR availablePANTHERPTHR44291:SF2RNA RECOGNITION MOTIF-CONTAINING PROTEINcoord: 1..473
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 8..78
e-value: 2.22141E-35
score: 125.391
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 104..183
e-value: 2.76803E-45
score: 153.29
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 100..204
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 3..94