CsaV3_6G006940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G006940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 5674594 .. 5675327 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGATTTCTCCTTGATTGGGTCTTATAATTACCTTCTTTTCCTTTGGGCTCGAATGTGCCATTAAACAACAAAGGAATTAATTTATAAGCACTTAAAAGAGAGCTAGAAAAAATAGATTTTGTAAAGAGACCAGGGAAAGCCAGTACTGGAAAATTTGGAGGTGTAGTTCATGGGTCTGGGTTTGCGATTGAACCATTGGGGGATGAGCCTGGATCGTCGTTCGTCGGTGGTGTAGTGGGCAGAGTCGTCGATGATCGAATGGGGAAGGTGATCGAGATCAAGGGCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAGAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCATGAGGGAGAAGACAGAAAACAAAGTTGTTATGAGGACAGTTTAGGATACGCAATAGCATATGCTCACAGGAACAAGTGATGGAGATCAATAGAACACACAACTAATTAGCTGAGCTGTGTGTTAGCTTTACTCTCCTTTTCATTTCCTTTTTCCTTACCCCTTTTTCTTCATTCTGTCAAGTTTTGTGTAATAAAGTTTTTTAAGGCTATGTATGTATATATATATATATATATAGTCTTGATTGTTTGTTGTGTTATTTTTAGATTTCGCCTACCAAAGTCTTAAAATGATCATTAAGAGTTATTGTGGAAGGATCAAAATTGCTTATGATATACTGAAA

mRNA sequence

ATGGGGAAGGTGATCGAGATCAAGGGCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAGAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCATGAGGGAGAAGACAGAAAACAAAGTTGTTATGAGGACAGTTTAG

Coding sequence (CDS)

ATGGGGAAGGTGATCGAGATCAAGGGCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAGAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCATGAGGGAGAAGACAGAAAACAAAGTTGTTATGAGGACAGTTTAG

Protein sequence

MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV
Homology
[Close]
BLAST of CsaV3_6G006940 vs. NCBI nr
Match: KGN46325.1 (hypothetical protein Csa_6G084590 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 59
          MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV
Sbjct: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 58

[Close]
BLAST of CsaV3_6G006940 vs. TrEMBL
Match: tr|A0A0A0K980|A0A0A0K980_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084590 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 59
          MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV
Sbjct: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 58

The following BLAST results are available for this feature:
BLAST of CsaV3_6G006940 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46325.12.0e-23100.00hypothetical protein Csa_6G084590 [Cucumis sativus][more]
BLAST of CsaV3_6G006940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G006940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G006940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K980|A0A0A0K980_CUCSA1.4e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G006940.1CsaV3_6G006940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G006940CsGy6G006610Cucumber (Gy14) v2cgybcucB298
CsaV3_6G006940MELO3C022432Melon (DHL92) v3.5.1cucmeB444
CsaV3_6G006940MELO3C022432.2Melon (DHL92) v3.6.1cucmedB435
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G006940Cucumber (Gy14) v1cgycucB556
CsaV3_6G006940Cucurbita maxima (Rimu)cmacucB0446
CsaV3_6G006940Cucurbita maxima (Rimu)cmacucB1077
CsaV3_6G006940Cucurbita moschata (Rifu)cmocucB0439
CsaV3_6G006940Cucurbita moschata (Rifu)cmocucB1060
CsaV3_6G006940Cucurbita pepo (Zucchini)cpecucB0408
CsaV3_6G006940Wild cucumber (PI 183967)cpicucB364
CsaV3_6G006940Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G006940Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G006940Watermelon (97103) v1cucwmB562
CsaV3_6G006940Watermelon (97103) v2cucwmbB487
CsaV3_6G006940Wax gourdcucwgoB561
CsaV3_6G006940Wax gourdcucwgoB568
CsaV3_6G006940Silver-seed gourdcarcucB0098
CsaV3_6G006940Silver-seed gourdcarcucB0807