CsaV3_6G006940.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G006940.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 5674594 .. 5675327 (-)
Sequence length177
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGATTTCTCCTTGATTGGGTCTTATAATTACCTTCTTTTCCTTTGGGCTCGAATGTGCCATTAAACAACAAAGGAATTAATTTATAAGCACTTAAAAGAGAGCTAGAAAAAATAGATTTTGTAAAGAGACCAGGGAAAGCCAGTACTGGAAAATTTGGAGGTGTAGTTCATGGGTCTGGGTTTGCGATTGAACCATTGGGGGATGAGCCTGGATCGTCGTTCGTCGGTGGTGTAGTGGGCAGAGTCGTCGATGATCGAATGGGGAAGGTGATCGAGATCAAGGGCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAGAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCATGAGGGAGAAGACAGAAAACAAAGTTGTTATGAGGACAGTTTAGGATACGCAATAGCATATGCTCACAGGAACAAGTGATGGAGATCAATAGAACACACAACTAATTAGCTGAGCTGTGTGTTAGCTTTACTCTCCTTTTCATTTCCTTTTTCCTTACCCCTTTTTCTTCATTCTGTCAAGTTTTGTGTAATAAAGTTTTTTAAGGCTATGTATGTATATATATATATATATATAGTCTTGATTGTTTGTTGTGTTATTTTTAGATTTCGCCTACCAAAGTCTTAAAATGATCATTAAGAGTTATTGTGGAAGGATCAAAATTGCTTATGATATACTGAAA

mRNA sequence

ATGGGGAAGGTGATCGAGATCAAGGGCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAGAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCATGAGGGAGAAGACAGAAAACAAAGTTGTTATGAGGACAGTTTAG

Coding sequence (CDS)

ATGGGGAAGGTGATCGAGATCAAGGGCAGGGAGGTGACCGAGAATTTGGGTGATGCTAATTTGTTTGGAGCAAAGAAATATGAAGATCAGAAGCAAACATATGACTTGAGTGACCTCTATGTTCCAGTACTCATGAGGGAGAAGACAGAAAACAAAGTTGTTATGAGGACAGTTTAG

Protein sequence

MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV
Homology
[Close]
BLAST of CsaV3_6G006940.1 vs. NCBI nr
Match: KGN46325.1 (hypothetical protein Csa_6G084590 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 59
          MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV
Sbjct: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 58

[Close]
BLAST of CsaV3_6G006940.1 vs. TrEMBL
Match: tr|A0A0A0K980|A0A0A0K980_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084590 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 59
          MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV
Sbjct: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPVLMREKTENKVVMRTV 58

The following BLAST results are available for this feature:
BLAST of CsaV3_6G006940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46325.12.0e-23100.00hypothetical protein Csa_6G084590 [Cucumis sativus][more]
BLAST of CsaV3_6G006940.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G006940.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G006940.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K980|A0A0A0K980_CUCSA1.4e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G006940CsaV3_6G006940gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G006940.1.cds1CsaV3_6G006940.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G006940.1.exon1CsaV3_6G006940.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G006940.1CsaV3_6G006940.1-proteinpolypeptide