MELO3C022432 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022432
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSplicing factor U2AF 50 kDa subunit
Locationchr11 : 30647190 .. 30647849 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCTATTAATATCGATCCTTTCTTCCTTTGGGTTTCGAATTTGCCATTAAACAACAAAGGAATTAATTAAGCACTTACAAGAGAGCTAGATGAAATGGATTCTGTAAAGAGACCAGGGAAAGCCAGTACTGGAAAAATTGGAGGTGTAGTTCATGGGTCTGGGTTTTCGTTTGAACCACTAGGTGATGAGCCTGGATCGCTGTTCGTCGGGGGTGTAGTGGGCAGAGTTGACGATGATCGAATGGGGAAGGTGATCGAGATCAAGGCCAGGGAGGTGACCGAGAATTTGTTTGGAGAAAAGAAATATGAAGATCAGAAGCAAAGAGATGAGTTGAGTGACCTCTATGTTCCGCTCGAGGGAGAAGACAGAAAAAAGAGTTGTTATGAGGACAATTTAGGATACGCAATAGCATATGCTCAGGAAAAGGTGATGGAGATCAATAGAACACACAATTAATTCGCTGTGTGTGTTGGTTTTGCTCTCCTTTTCATCATTTCCTTTTTCCTTCTCCCCTTTTTTCTTCATTCTGTCAAGTTTGATGCAATTAAATTTTTTAAGGCTATATATATAGTCTTAATTAATTGTTTGTGTGTTATTTTTTTATTTCGCCTATGTTTCAAAGTGTTTGTAATTTAATTAATTTCACCAAAGTTTT

mRNA sequence

ATGGTCCTATTAATATCGATCCTTTCTTCCTTTGGGTTTCGAATTTGCCATTAAACAACAAAGGAATTAATTAAGCACTTACAAGAGAGCTAGATGAAATGGATTCTGTAAAGAGACCAGGGAAAGCCAGTACTGGAAAAATTGGAGGTGTAGTTCATGGGTCTGGGTTTTCGTTTGAACCACTAGGTGATGAGCCTGGATCGCTGTTCGTCGGGGGTGTAGTGGGCAGAGTTGACGATGATCGAATGGGGAAGGTGATCGAGATCAAGGCCAGGGAGGTGACCGAGAATTTGTTTGGAGAAAAGAAATATGAAGATCAGAAGCAAAGAGATGAGTTGAGTGACCTCTATGTTCCGCTCGAGGGAGAAGACAGAAAAAAGAGTTGTTATGAGGACAATTTAGGATACGCAATAGCATATGCTCAGGAAAAGGTGATGGAGATCAATAGAACACACAATTAATTCGCTGTGTGTGTTGGTTTTGCTCTCCTTTTCATCATTTCCTTTTTCCTTCTCCCCTTTTTTCTTCATTCTGTCAAGTTTGATGCAATTAAATTTTTTAAGGCTATATATATAGTCTTAATTAATTGTTTGTGTGTTATTTTTTTATTTCGCCTATGTTTCAAAGTGTTTGTAATTTAATTAATTTCACCAAAGTTTT

Coding sequence (CDS)

ATGGATTCTGTAAAGAGACCAGGGAAAGCCAGTACTGGAAAAATTGGAGGTGTAGTTCATGGGTCTGGGTTTTCGTTTGAACCACTAGGTGATGAGCCTGGATCGCTGTTCGTCGGGGGTGTAGTGGGCAGAGTTGACGATGATCGAATGGGGAAGGTGATCGAGATCAAGGCCAGGGAGGTGACCGAGAATTTGTTTGGAGAAAAGAAATATGAAGATCAGAAGCAAAGAGATGAGTTGAGTGACCTCTATGTTCCGCTCGAGGGAGAAGACAGAAAAAAGAGTTGTTATGAGGACAATTTAGGATACGCAATAGCATATGCTCAGGAAAAGGTGATGGAGATCAATAGAACACACAATTAA

Protein sequence

MDSVKRPGKASTGKIGGVVHGSGFSFEPLGDEPGSLFVGGVVGRVDDDRMGKVIEIKAREVTENLFGEKKYEDQKQRDELSDLYVPLEGEDRKKSCYEDNLGYAIAYAQEKVMEINRTHN*
Homology
[Close]
BLAST of MELO3C022432 vs. TrEMBL
Match: A0A0A0K980_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084590 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 50 MGKVIEIKAREVTE-----NLFGEKKYEDQKQRDELSDLYVPL 88
          MGKVIEIK REVTE     NLFG KKYEDQKQ  +LSDLYVP+
Sbjct: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPV 43

[Close]
BLAST of MELO3C022432 vs. NCBI nr
Match: gi|700191121|gb|KGN46325.1| (hypothetical protein Csa_6G084590 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 50 MGKVIEIKAREVTE-----NLFGEKKYEDQKQRDELSDLYVPL 88
          MGKVIEIK REVTE     NLFG KKYEDQKQ  +LSDLYVP+
Sbjct: 1  MGKVIEIKGREVTENLGDANLFGAKKYEDQKQTYDLSDLYVPV 43

The following BLAST results are available for this feature:
BLAST of MELO3C022432 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K980_CUCSA1.7e-0674.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084590 PE=4 SV=1[more]
BLAST of MELO3C022432 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191121|gb|KGN46325.1|2.4e-0674.42hypothetical protein Csa_6G084590 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022432T1MELO3C022432T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022432CsGy6G006610Cucumber (Gy14) v2cgybmeB379
MELO3C022432CsaV3_6G006940Cucumber (Chinese Long) v3cucmeB444
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022432Watermelon (97103) v2mewmbB127
MELO3C022432Wax gourdmewgoB095
MELO3C022432Wax gourdmewgoB103
MELO3C022432Cucumber (Gy14) v1cgymeB586
MELO3C022432Cucurbita maxima (Rimu)cmameB317
MELO3C022432Cucurbita maxima (Rimu)cmameB820
MELO3C022432Cucurbita moschata (Rifu)cmomeB310
MELO3C022432Cucurbita moschata (Rifu)cmomeB804
MELO3C022432Wild cucumber (PI 183967)cpimeB433
MELO3C022432Cucumber (Chinese Long) v2cumeB442
MELO3C022432Watermelon (Charleston Gray)mewcgB124
MELO3C022432Watermelon (97103) v1mewmB140
MELO3C022432Cucurbita pepo (Zucchini)cpemeB003
MELO3C022432Cucurbita pepo (Zucchini)cpemeB288
MELO3C022432Bottle gourd (USVL1VR-Ls)lsimeB017
MELO3C022432Silver-seed gourdcarmeB0081
MELO3C022432Silver-seed gourdcarmeB0761