CsaV3_6G002570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G002570
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProlamin-like domain containing protein
Locationchr6 : 1786632 .. 1787273 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCCTTCTCCATGCACACAACTTCCCTAAAAGCCTACCTTTTATTATTACACTAAAAATATTTATACATATTCGCTAATAAACTCAAAATAAAAGTGCACTATTAACAAATCAAATTCTTGTGTGTTTCAACAATGGCTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAATGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCGTCTAATTAAGTTATCACCGTGATCTTTTTCCTTAACTCCATTAGTTTTGTCTTATGGAGGTTCCTAAGTCCAACGTTTGTTCAAGGCTAAAATGCAATAAATAAAGTAAAGCCTTGCTGTTTCTTTTGGGTTGTAAGGTTAATTACTTTAAACTAATAAATAAACAATCAGTTGTTTGG

mRNA sequence

ATGGCTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAATGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCGTCTAATTAA

Coding sequence (CDS)

ATGGCTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAATGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCGTCTAATTAA

Protein sequence

MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN
Homology
[Close]
BLAST of CsaV3_6G002570 vs. NCBI nr
Match: KGN45861.1 (hypothetical protein Csa_6G014810 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 6.1e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 112
           LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 111

[Close]
BLAST of CsaV3_6G002570 vs. NCBI nr
Match: PON83529.1 (Prolamin-like domain containing protein [Trema orientalis])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCSNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAAAPP 129

[Close]
BLAST of CsaV3_6G002570 vs. NCBI nr
Match: OMO70446.1 (hypothetical protein CCACVL1_18914 [Corchorus capsularis])

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 1   MASIAFKLFFLVSLLALVL-----------PTSMAMNGSSMALNATTTMN-----CFNPL 60
           MASI  ++ FL  LL  +L           PTS   + +S++L A   ++     C++ L
Sbjct: 1   MASIV-RIIFLAFLLTTLLFLANARPMDPNPTSSRRSSTSLSLVARLKLDEEPTGCWDSL 60

Query: 61  --LQSCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCK 111
             LQSC  EI+ F   NG   +  +CCQAI      C    + +LG T ++ H+LE YC 
Sbjct: 61  IELQSCTGEIIMFFL-NGETELGHSCCQAIRTISNHCWPSMIGALGFTTEETHVLEGYCD 120

[Close]
BLAST of CsaV3_6G002570 vs. NCBI nr
Match: XP_022777254.1 (egg cell-secreted protein 1.2-like [Durio zibethinus])

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 0 

Query: 1   MASIAFKLFFLVSLLALVL-------------PTSMAMNGSSMALNATTTMNCFNPL--L 60
           MASI+F++FF   LLAL L             PT+     + + L+  +T NC++ L  L
Sbjct: 36  MASISFRVFFFAFLLALSLLFMANARQVDDFEPTTTTDLMARLKLDEEST-NCWDSLIQL 95

Query: 61  QSCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYC 102
           QSC  E++ F   NG   +  +CCQAI     +C    + +LG T ++ H+LE YC
Sbjct: 96  QSCTGELIMFFL-NGETDLGHSCCQAIRTISHQCWPSMIDALGFTKEETHVLEGYC 149

[Close]
BLAST of CsaV3_6G002570 vs. NCBI nr
Match: PON60757.1 (Prolamin-like domain containing protein [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCLNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAVAPP 129

[Close]
BLAST of CsaV3_6G002570 vs. TrEMBL
Match: tr|A0A0A0KDK2|A0A0A0KDK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014810 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.1e-53
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 112
           LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 111

[Close]
BLAST of CsaV3_6G002570 vs. TrEMBL
Match: tr|A0A2P5EDA6|A0A2P5EDA6_9ROSA (Prolamin-like domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_206840 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCSNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAAAPP 129

[Close]
BLAST of CsaV3_6G002570 vs. TrEMBL
Match: tr|A0A1R3HJB2|A0A1R3HJB2_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18914 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 1   MASIAFKLFFLVSLLALVL-----------PTSMAMNGSSMALNATTTMN-----CFNPL 60
           MASI  ++ FL  LL  +L           PTS   + +S++L A   ++     C++ L
Sbjct: 1   MASIV-RIIFLAFLLTTLLFLANARPMDPNPTSSRRSSTSLSLVARLKLDEEPTGCWDSL 60

Query: 61  --LQSCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCK 111
             LQSC  EI+ F   NG   +  +CCQAI      C    + +LG T ++ H+LE YC 
Sbjct: 61  IELQSCTGEIIMFFL-NGETELGHSCCQAIRTISNHCWPSMIGALGFTTEETHVLEGYCD 120

[Close]
BLAST of CsaV3_6G002570 vs. TrEMBL
Match: tr|A0A2P5CI82|A0A2P5CI82_PARAD (Prolamin-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_150540 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 38  MNCFNPLLQ--SCRNEILTFITNNGLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFH 97
           + C+  LL+  SC NEI+ F   NG   I + CC+A++   R C    L+SLG TVQ+  
Sbjct: 57  VECWTALLELKSCLNEIVLFFL-NGQTDIGNDCCRAVVFIARNCWPAMLTSLGFTVQEGD 116

Query: 98  ILETYCKLIANFPP 110
           IL+ YC  +A  PP
Sbjct: 117 ILQGYCDAVAVAPP 129

[Close]
BLAST of CsaV3_6G002570 vs. TrEMBL
Match: tr|G7JAV4|G7JAV4_MEDTR (ECA1 gametogenesis related family OS=Medicago truncatula OX=3880 GN=11444243 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 0 

Query: 7   KLFFLVSLLALVLPTSMAMN---GSSMAL--NATTTMNCFNPL--LQSCRNEILTFITNN 66
           KLF ++SL  +V  TS++      S + L   +     C+  +  LQ C  +I+TF   N
Sbjct: 6   KLFIIISLSTIVTATSLSSTKTLASRLELFDGSGPNNKCWETMLELQHCTGDIVTFFL-N 65

Query: 67  GLVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIAN 107
           G   + S CC A+L   +EC    L+SLG+TV++  IL  +C  +A+
Sbjct: 66  GQTHLGSGCCNALLTIAQECWGNLLTSLGLTVEEAEILRGFCARVAS 111

The following BLAST results are available for this feature:
BLAST of CsaV3_6G002570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45861.16.1e-53100.00hypothetical protein Csa_6G014810 [Cucumis sativus][more]
PON83529.12.8e-0541.89Prolamin-like domain containing protein [Trema orientalis][more]
OMO70446.14.8e-0534.38hypothetical protein CCACVL1_18914 [Corchorus capsularis][more]
XP_022777254.14.8e-0535.34egg cell-secreted protein 1.2-like [Durio zibethinus][more]
PON60757.14.8e-0541.89Prolamin-like domain containing protein [Parasponia andersonii][more]
BLAST of CsaV3_6G002570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G002570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G002570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDK2|A0A0A0KDK2_CUCSA4.1e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014810 PE=4 SV=1[more]
tr|A0A2P5EDA6|A0A2P5EDA6_9ROSA1.9e-0541.89Prolamin-like domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x... [more]
tr|A0A1R3HJB2|A0A1R3HJB2_COCAP3.2e-0534.38Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18914 PE=4 ... [more]
tr|A0A2P5CI82|A0A2P5CI82_PARAD3.2e-0541.89Prolamin-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanW... [more]
tr|G7JAV4|G7JAV4_MEDTR2.7e-0433.64ECA1 gametogenesis related family OS=Medicago truncatula OX=3880 GN=11444243 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008502Prolamin-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G002570.1CsaV3_6G002570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 39..95
e-value: 8.9E-11
score: 41.7
NoneNo IPR availablePANTHERPTHR35293:SF1EGG CELL-SECRETED PROTEIN 1.2-RELATEDcoord: 17..102
NoneNo IPR availablePANTHERPTHR35293FAMILY NOT NAMEDcoord: 17..102

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G002570CSPI06G02400Wild cucumber (PI 183967)cpicucB364
CsaV3_6G002570Cucsa.325780Cucumber (Gy14) v1cgycucB506
CsaV3_6G002570CsGy6G002440Cucumber (Gy14) v2cgybcucB298
CsaV3_6G002570ClCG08G002070Watermelon (Charleston Gray)cucwcgB518
CsaV3_6G002570Lsi08G002030Bottle gourd (USVL1VR-Ls)cuclsiB501
CsaV3_6G002570MELO3C030229.2Melon (DHL92) v3.6.1cucmedB473
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G002570Cucurbita maxima (Rimu)cmacucB0043
CsaV3_6G002570Cucurbita maxima (Rimu)cmacucB0580
CsaV3_6G002570Cucurbita moschata (Rifu)cmocucB0030
CsaV3_6G002570Cucurbita moschata (Rifu)cmocucB0566
CsaV3_6G002570Cucurbita pepo (Zucchini)cpecucB0401
CsaV3_6G002570Cucurbita pepo (Zucchini)cpecucB0723
CsaV3_6G002570Melon (DHL92) v3.5.1cucmeB478
CsaV3_6G002570Watermelon (97103) v1cucwmB489
CsaV3_6G002570Watermelon (97103) v2cucwmbB508