Lsi08G002030 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi08G002030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 4356877 .. 4357187 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATTACTTTCAAGCTCTTCTTTCTCATTTCTTTGCTAGCTCTTGTTCTTCCTACCTCCATGGCTATGTATGGCGGTAGCATGGCGTTGGATGCTACCACGACGACGGATTGTTTGAACCCTTTGCTTCAATCGTGTAGGAATGAAATAGTCGTCCAGCTTGTTGCCAAGTAATTCTAAATTTTCGTCGTGAATGTTTGTCTGAATTTCTTAGTTCACTAGGGATTACTGTCCAAGACTTCAATATTCTTGAATCTTATTGCAAATTGATTGCAAAGTTTCCACCTTCTCAGTTATCACCATGA

mRNA sequence

ATGGCTTCCATTACTTTCAAGCTCTTCTTTCTCATTTCTTTGCTAGCTCTTGTTCTTCCTACCTCCATGGCTATGTATGGCGGTAGCATGGCGTTGGATGCTACCACGACGACGGATTGTTTGAACCCTTTGCTTCAATCGTGGATTACTGTCCAAGACTTCAATATTCTTGAATCTTATTGCAAATTGATTGCAAAGTTTCCACCTTCTCAGTTATCACCATGA

Coding sequence (CDS)

ATGGCTTCCATTACTTTCAAGCTCTTCTTTCTCATTTCTTTGCTAGCTCTTGTTCTTCCTACCTCCATGGCTATGTATGGCGGTAGCATGGCGTTGGATGCTACCACGACGACGGATTGTTTGAACCCTTTGCTTCAATCGTGGATTACTGTCCAAGACTTCAATATTCTTGAATCTTATTGCAAATTGATTGCAAAGTTTCCACCTTCTCAGTTATCACCATGA

Protein sequence

MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQSWITVQDFNILESYCKLIAKFPPSQLSP
BLAST of Lsi08G002030 vs. TrEMBL
Match: A0A0A0KDK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014810 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-16
Identity = 58/110 (52.73%), Postives = 63/110 (57.27%), Query Frame = 1

Query: 1   MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQS------------- 60
           MASI FKLFFL+SLLALVLPTSMAM G SMAL+ATTT +C NPLLQS             
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  ---------------------------WITVQDFNILESYCKLIAKFPPS 71
                                       ITVQDF+ILE+YCKLIA FPPS
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPS 110

BLAST of Lsi08G002030 vs. NCBI nr
Match: gi|659126247|ref|XP_008463086.1| (PREDICTED: egg cell-secreted protein 1.2-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-17
Identity = 60/114 (52.63%), Postives = 67/114 (58.77%), Query Frame = 1

Query: 1   MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQS------------- 60
           MASI FKLFFLISLL LVLPTSMA+ GGSMAL+ATTT +C NPLLQS             
Sbjct: 1   MASIAFKLFFLISLLVLVLPTSMALNGGSMALNATTTMNCFNPLLQSCRNEIVTFITNNG 60

Query: 61  ---------------------------WITVQDFNILESYCKLIAKFPPSQLSP 75
                                       IT+QDF+ILE+YCKLIAK PPS+LSP
Sbjct: 61  LVVIRSACCQAILNFRRDCLSEFLTSLGITLQDFHILETYCKLIAKVPPSKLSP 114

BLAST of Lsi08G002030 vs. NCBI nr
Match: gi|700190657|gb|KGN45861.1| (hypothetical protein Csa_6G014810 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 58/110 (52.73%), Postives = 63/110 (57.27%), Query Frame = 1

Query: 1   MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQS------------- 60
           MASI FKLFFL+SLLALVLPTSMAM G SMAL+ATTT +C NPLLQS             
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  ---------------------------WITVQDFNILESYCKLIAKFPPS 71
                                       ITVQDF+ILE+YCKLIA FPPS
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPS 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDK2_CUCSA7.1e-1652.73Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659126247|ref|XP_008463086.1|4.1e-1752.63PREDICTED: egg cell-secreted protein 1.2-like [Cucumis melo][more]
gi|700190657|gb|KGN45861.1|1.0e-1552.73hypothetical protein Csa_6G014810 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G002030.1Lsi08G002030.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G002030ClCG08G002070Watermelon (Charleston Gray)lsiwcgB440
Lsi08G002030CsaV3_6G002570Cucumber (Chinese Long) v3cuclsiB501
The following gene(s) are paralogous to this gene:

None