Lsi08G002030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G002030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr08 : 4356877 .. 4357187 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTACTTTCAAGCTCTTCTTTCTCATTTCTTTGCTAGCTCTTGTTCTTCCTACCTCCATGGCTATGTATGGCGGTAGCATGGCGTTGGATGCTACCACGACGACGGATTGTTTGAACCCTTTGCTTCAATCGTGTAGGAATGAAATAGTCGTCCAGCTTGTTGCCAAGTAATTCTAAATTTTCGTCGTGAATGTTTGTCTGAATTTCTTAGTTCACTAGGGATTACTGTCCAAGACTTCAATATTCTTGAATCTTATTGCAAATTGATTGCAAAGTTTCCACCTTCTCAGTTATCACCATGA

mRNA sequence

ATGGCTTCCATTACTTTCAAGCTCTTCTTTCTCATTTCTTTGCTAGCTCTTGTTCTTCCTACCTCCATGGCTATGTATGGCGGTAGCATGGCGTTGGATGCTACCACGACGACGGATTGTTTGAACCCTTTGCTTCAATCGTGGATTACTGTCCAAGACTTCAATATTCTTGAATCTTATTGCAAATTGATTGCAAAGTTTCCACCTTCTCAGTTATCACCATGA

Coding sequence (CDS)

ATGGCTTCCATTACTTTCAAGCTCTTCTTTCTCATTTCTTTGCTAGCTCTTGTTCTTCCTACCTCCATGGCTATGTATGGCGGTAGCATGGCGTTGGATGCTACCACGACGACGGATTGTTTGAACCCTTTGCTTCAATCGTGGATTACTGTCCAAGACTTCAATATTCTTGAATCTTATTGCAAATTGATTGCAAAGTTTCCACCTTCTCAGTTATCACCATGA

Protein sequence

MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQSWITVQDFNILESYCKLIAKFPPSQLSP

Homology

[Close]

BLAST of Lsi08G002030 vs. TrEMBL
Match: A0A0A0KDK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014810 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-16
Identity = 58/110 (52.73%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 1   MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQS------------- 60
           MASI FKLFFL+SLLALVLPTSMAM G SMAL+ATTT +C NPLLQS             
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  ---------------------------WITVQDFNILESYCKLIAKFPPS 71
                                       ITVQDF+ILE+YCKLIA FPPS
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPS 110

[Close]

BLAST of Lsi08G002030 vs. NCBI nr
Match: gi|659126247|ref|XP_008463086.1| (PREDICTED: egg cell-secreted protein 1.2-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-17
Identity = 60/114 (52.63%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 1   MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQS------------- 60
           MASI FKLFFLISLL LVLPTSMA+ GGSMAL+ATTT +C NPLLQS             
Sbjct: 1   MASIAFKLFFLISLLVLVLPTSMALNGGSMALNATTTMNCFNPLLQSCRNEIVTFITNNG 60

Query: 61  ---------------------------WITVQDFNILESYCKLIAKFPPSQLSP 75
                                       IT+QDF+ILE+YCKLIAK PPS+LSP
Sbjct: 61  LVVIRSACCQAILNFRRDCLSEFLTSLGITLQDFHILETYCKLIAKVPPSKLSP 114

[Close]

BLAST of Lsi08G002030 vs. NCBI nr
Match: gi|700190657|gb|KGN45861.1| (hypothetical protein Csa_6G014810 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 58/110 (52.73%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 1   MASITFKLFFLISLLALVLPTSMAMYGGSMALDATTTTDCLNPLLQS------------- 60
           MASI FKLFFL+SLLALVLPTSMAM G SMAL+ATTT +C NPLLQS             
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  ---------------------------WITVQDFNILESYCKLIAKFPPS 71
                                       ITVQDF+ILE+YCKLIA FPPS
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPS 110

The following BLAST results are available for this feature:

BLAST of Lsi08G002030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G002030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK2_CUCSA	7.1e-16	52.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014810 PE=4 SV=1	[more]

BLAST of Lsi08G002030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi08G002030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126247\|ref\|XP_008463086.1\|	4.1e-17	52.63	PREDICTED: egg cell-secreted protein 1.2-like [Cucumis melo]	[more]
gi\|700190657\|gb\|KGN45861.1\|	1.0e-15	52.73	hypothetical protein Csa_6G014810 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G002030.1	Lsi08G002030.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G002030	ClCG08G002070	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G002030	CsaV3_6G002570	Cucumber (Chinese Long) v3	cuclsiB501

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G002030	Melon (DHL92) v3.6.1	lsimedB495
Lsi08G002030	Watermelon (97103) v2	lsiwmbB445
Lsi08G002030	Cucumber (Gy14) v1	cgylsiB534
Lsi08G002030	Cucurbita maxima (Rimu)	cmalsiB041
Lsi08G002030	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G002030	Cucurbita moschata (Rifu)	cmolsiB022
Lsi08G002030	Cucurbita moschata (Rifu)	cmolsiB026
Lsi08G002030	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G002030	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G002030	Wild cucumber (PI 183967)	cpilsiB479
Lsi08G002030	Cucumber (Chinese Long) v2	culsiB471
Lsi08G002030	Melon (DHL92) v3.5.1	lsimeB471
Lsi08G002030	Watermelon (97103) v1	lsiwmB467
Lsi08G002030	Cucumber (Gy14) v2	cgyblsiB438