CSPI06G02400 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G02400
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 1803787 .. 1804419 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATAACTTCCCTAAAAGCCTACATTTTATTATTACACTAAAAATATCTATACATATTCGCTAATAAACTCAAAATAAAAGTGCACTATTAAACAAATCGAATTCTTGTGTGTTTCAACAATGACTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAACGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCTTCTAATTAAGTTATCACCGTGATCTTTTTCCTTAACTCCATTAGTTTTGTCTTATGGAGGTTCCTAAGTCCAACGTTTGTTCAAGGCTAAAATGCAATAAATAAAGTAAAGCCTTGCTGTTTCTTTTGGTTGTAAGGTTAATTACTTTAAACTAATAAATAAACAATCACTTGTTTGGAAATTTGG

mRNA sequence

ATGACTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAACGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCTTCTAATTAA

Coding sequence (CDS)

ATGACTTCCATTGCTTTCAAGCTCTTCTTTCTCGTTTCTTTGCTAGCTCTTGTTCTTCCTACCTCTATGGCTATGAATGGCAGTAGCATGGCGCTGAACGCTACCACGACGATGAACTGCTTCAACCCTTTGCTTCAATCGTGTAGGAACGAAATACTGACGTTCATTACAAATAACGGTTTGGTTGTTATCCGTTCAGCTTGTTGCCAAGCAATTCTAAATTTTCGTCGTGAATGTTTATCTGAATTTCTTAGTTCACTTGGAATTACTGTCCAAGACTTCCATATTCTTGAAACTTATTGCAAATTGATAGCAAATTTTCCACCTTCTAATTAA

Homology

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BLAST of CSPI06G02400 vs. TrEMBL
Match: A0A0A0KDK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014810 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.4e-53
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 1   MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           M SIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 112
           LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 111

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BLAST of CSPI06G02400 vs. NCBI nr
Match: gi|700190657|gb|KGN45861.1| (hypothetical protein Csa_6G014810 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 9.2e-53
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 1   MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           M SIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG
Sbjct: 1   MASIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 112
           LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN
Sbjct: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPSN 111

[Close]

BLAST of CSPI06G02400 vs. NCBI nr
Match: gi|659126247|ref|XP_008463086.1| (PREDICTED: egg cell-secreted protein 1.2-like [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-47
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 1


Query: 1   MTSIAFKLFFLVSLLALVLPTSMAMNGSSMALNATTTMNCFNPLLQSCRNEILTFITNNG 60
           M SIAFKLFFL+SLL LVLPTSMA+NG SMALNATTTMNCFNPLLQSCRNEI+TFITNNG
Sbjct: 1   MASIAFKLFFLISLLVLVLPTSMALNGGSMALNATTTMNCFNPLLQSCRNEIVTFITNNG 60

Query: 61  LVVIRSACCQAILNFRRECLSEFLSSLGITVQDFHILETYCKLIANFPPS 111
           LVVIRSACCQAILNFRR+CLSEFL+SLGIT+QDFHILETYCKLIA  PPS
Sbjct: 61  LVVIRSACCQAILNFRRDCLSEFLTSLGITLQDFHILETYCKLIAKVPPS 110

The following BLAST results are available for this feature:

BLAST of CSPI06G02400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G02400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK2_CUCSA	6.4e-53	99.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014810 PE=4 SV=1	[more]

BLAST of CSPI06G02400 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G02400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190657\|gb\|KGN45861.1\|	9.2e-53	99.10	hypothetical protein Csa_6G014810 [Cucumis sativus]	[more]
gi\|659126247\|ref\|XP_008463086.1\|	1.2e-47	90.00	PREDICTED: egg cell-secreted protein 1.2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02400.1	CSPI06G02400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 39..95 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G02400	Csa6G014810	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G02400	ClCG08G002070	Watermelon (Charleston Gray)	cpiwcgB526
CSPI06G02400	MELO3C030229.2	Melon (DHL92) v3.6.1	cpimedB464
CSPI06G02400	CsaV3_6G002570	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G02400	Cucsa.325780	Cucumber (Gy14) v1	cgycpiB491
CSPI06G02400	CsGy6G002440	Cucumber (Gy14) v2	cgybcpiB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G02400	Watermelon (97103) v2	cpiwmbB516
CSPI06G02400	Cucurbita maxima (Rimu)	cmacpiB035
CSPI06G02400	Cucurbita maxima (Rimu)	cmacpiB488
CSPI06G02400	Cucurbita moschata (Rifu)	cmocpiB025
CSPI06G02400	Cucurbita moschata (Rifu)	cmocpiB477
CSPI06G02400	Melon (DHL92) v3.5.1	cpimeB468
CSPI06G02400	Watermelon (97103) v1	cpiwmB478
CSPI06G02400	Cucurbita pepo (Zucchini)	cpecpiB585
CSPI06G02400	Bottle gourd (USVL1VR-Ls)	cpilsiB479