CsaV3_5G038690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G038690
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProtein of unknown function (DUF3317)
Locationchr5 : 30634224 .. 30639176 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGTCATTTAGGTTAGTTGTATTGTGAGAGTCGGGAGGGTAGTTTTGTAATTCTATGTAGACTGTTTTTTAATTACTTTCCATCCACCGCGAAAGGAAGAAGCTTTTGATTCTCTGAAGCTTCAAGGCAGAGCTCTCGAATCAAGCCTTCCTCAATTCTCATCTCTATCTGTTGCATGAAAGGTAAGACGAATCAGATCACAGAAACATTTTTAATTTGATAATTTCTCGTTGAACTTCATCTTTGGTCTTTCTAATCTGTCGGGACTTCACCATTTTCTGCTTGATTCCTCCCCTAATTCAAGCAAAAGCGAGTATTTCTCCTTCTCTGTAATGACTTATGCAGCGAACGAGCGAAAAAACGCTTCAAAAACTCTTTTTCTGATTCCATTTCCTTCAATGGAAAATGGGGTTTTTCTTCTTTTGAACATTTATGGAACCGGTTCTGTTTCAGAGCTATTAGTTTTCGTGTTTATGGGTTTTTAGATCTGTGTTTGCTTATAGAATTTGACTTTGAAGGAATCCGGAAATAGGAATTTGGGATCCCCCCTTGTGATAAAATTTTACGTTCACTGCTATTTGGCGAAGCTTGATCGGAAGGTTTGGCAGTAAAGCATAGCCTTTCTGATTGATAAACACATCACCTATTGAAGTTTGACTGTACATTATATTTCGAAGTTTCTTTGTTAAACTGCCATACTTATTGATTCATCATCCATTTCCTCATATTTCTATGACCTGAAAATTTTGAATGGTTTTGACTTGGGTGGTTGCTTCTTGCTTGTAGGTTTTCTATAGCCATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAGTATGCTCTCTATCCCAAGGGATATTTGATCTGTTTTATCATTTGCAAGCATGCGTAGTACGTGTTTCAGATAAAGTTATGCCGCCAGTATCTTGTCCAGCCAAATAATTACTGATATTTACTATTTCTTTTGTTGATATTAAGATTTAATATTGATTTTTCATTATTCGAGTTATGTCCTGCTCTGTGGATGATGGATATATGGCTATATGTTATATAATTTTCAATCATGCTTGTTCGGTGTGTCAGTATCTTATGTTAACTGGATTTAGGATTTGTCTAGTTAGATGTTGAATTTCATTGGTTCAATAATTTCTGTGAGATTGAATTTAATTTGTGCAACTCTTTTCTTTTTCTTACTATTGACCTCTTGAATTCTTCAAATATTATTGTAGATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATTGTATTTATCTTTACTCTACCATTTCCTTTTCACAATCGGGAAATAAAATATATATTACAATTGATTGCACATATTGCAGTAGACATTTGATAATCCAACCACCAAAGAAAATATTGTTCCTCTATTTTCATGTGACCTTAGTCCAGCAAAATAAAAACAGTGGTTACATATTTGTTCTTCTTTCTGATTTAATTATAACTGTTTAGACCATTAATTTATAGAAATGCAACATAAAGGGGGAGAATCTAACTCCAAAGGAATCAGAGTAACACAACAGCTCGAAGTACTTTAATTGAGGGATGAGGAGATGATAGTTAGAGAACTCTCTGGAGGGGAAGCTCCAAGAGTAGAATAGCAAAACAGTGTCGCCCCAAATCTTATAGGGTTCATTTCTTTCATTTGTCCTATAAGGATCTCCTGTTATTTGTAACCAACTTTCTGAATAAATAGCCTTATAGTTTCTGAAGATTTATGTTTGGCCAATCCAACCACAAGTTAAAGAACTACATCTTGGAGCAAAATTATGCTATAACGGTCAGGTAGTTTTTTAGTTGGGAACGTCCTCAAAGACAAGAAGGGAAAAAATTATTTTAGTTATCTAAATCTCCTCTCTTATTTTTTTTTGATAAGAGACAAATATATTCATATAACAAAACAGAACATCCTAAGGGCGAGGGACAAGAGGGCCCTCCCCGGAAGAAGCTAGGGAACTAAGACATGATGGCCTTCCAATTGTTGAAAATCATAGAAAGACTATAATTACAAAAGTGTTTGGTGTAATTCGTACTCCACCAAGAGGCTGTGTGTTGAACCACAGTCCAAAAAGAATCAAAAGAATTAAATCTATCTTCAAAAATTCTGCTATTCCTTTCTTTCCAAATGCTCCACAAAAGGGAACGCGTCGCACATTTCCATAAGATGTTTCCTTTAGGGCTGTAACCTCTAATGTTAAGACCTTCAATCATCCAACTATCAATCTTACTAGGAAGACAAAGCTCCAAGTCAAAAATACCAAACAGAGTGTTCCAAGCTTTTTTTGTGAAGGGACAATGTAGAAATAAATGATCCAAGGTTTCCTCATCTTTAGAGCATAGGCAACACATCGAGGGGCTAAGCAATCCAAGGTTTCCTCATCTTTAGAGCATAGGCAACACATCGAGGGGCTAAGCAATGTGTTCTGAATTGTTGAGGCTTCTGTAAGCAAGCGACCATAAGAAAAACTTCACCTTCTTCGGAATTTTATTCTTCCAAATATGACGAATCAAGGGAACAGCAATGTTGGGGGATCTCTTAGTTAAGTTAAGAAAAGTAGACTTTTGGAATTTAGTCTCCTCTCTTATTGAAAAGGATATTTAGTCTTAGGATGTATTTAGGATTGTTTCTCAAGTAATGACTTTTGGAATGGATGGAAAATTATTTGGATGATTGGTTCTATACTATGCGATGGTTTCTTACATAGCACTTTAAGGTGCTTATATATATCTATATATGTACATATTTGGATAAGAGACGGGTATATTCAGAAGAACAAAGTAGAACAGCCTAAGGGTAAGGAATGAAAGGGCCCTCTCCAAGAAAGACTATAAATAAGAGTTCCAATTGTTAAAAATTATAGAAAGGCTATCATTACAAAAGTGTTTGGTGTAGTTGGTACTCCACGAAGAAGCTGTGTGTTGAACCACAGTAAAAAAGAATCAAAAGAATTATATTTATCTTAAAAAATTATTCTATTTCTCTCATTCCAATTGAACCACAATAGGGATCAAGAGCACATCACCACAGAATGTTACCCTTCGGGCAAAAAACTTTGCTGTTGAGCCCTTCATGCATCCAACTATCAATGTTGCTAGGAAGACAAAAATCCAGATTGAAAATTCTGAACAACATAGACCAGCCTTTCAAAACGAAGTCACAAAGGAATACAAAGGCAGCACATAGAAGGGCTGAGAGCAAAGTACCGAAACTTTCTTTGGAGCTTTTCATGAAAAATTATAGAAAGGCTATAATTACGAAATTGTTTGGTTAGGTGCTATGTTTTTTTTAAAACGTGAAATTTTTTAAAAGACAGTTGCCAAAGATACTCTCGAGGATGGCCTTCATCACACATTGCTCCAATTATCGTTTGTTATTCTTACAAAACACTCTCAAGGCTATCATTTATTATGCTTTTACTTCTGCAAATCTTTATCTCCTCTGAGTCTAATTAACAGTGACAGAGTGACATTATGGTCATTGGCAACATGAAACCCTTTTTATGTTTTAAATCATAAGCCAATCAAGAACTTGATTTTCATACAATCAAAATTCATTTAGATGGTTTAAGTCATGTTTCGGAATGATTTTAAACACAATTTTAACCATTTCATAATCACTCCCAAACTTTCAACACATTGTAGATATTAATTAGTTCTGTCAGTTTTTCTTCTTTATCGTTTCATATGCAGATGTTGTAATTGATTACTGTTCTGTTTTTGTTATCTAATGCCATACCAACCAGATTGCACTGTTAAACCTTTTGTTTCTTATATATCTTCCTCCCATCACTTGCTTCTCAGGTATCTGTGGCAAGCCAAGGCGTAGGAGAAGTCAATTTGGATGCAATTTTGCATTCTTATCAATCTTGTAAAGAGATGTCATGTACTTTGAGAATGGTGTAGTTTTCCCTTTTTGCTTTTAGATGAGCTTCTCTGTTTCTTGAATTTATAGAACAAACTTTGTATTACACTTAAGATCTGTATTGAAACTGATTTTCATATTCAAATGAAATGCTCTGATGAGTTATTAGAGTGTAAATGTTGTTGTTCTTGGTGAATTAGAATGCGGTCAGATTTAAGTAATTGCAATGCTTTTCTTGTATTTGTTAGAGTTGTCACTATGACTTGTCTAAATCAGAATTAGACGATGAAGGCAAACAAAATGATTTGCCCATTGTATTTGAATAAAAGGCAGATGCAAATACTAAATCAAGGCAGATAAAGTAGATGCCAAGTGATTGCCTTTTTCTGAAATAGCAACTTTCCAAGTGGAAGCCAACTTGAGCATCTAAAACTATTATAGTATCAGATTCTGAATTTTAACGACAATTTTTTGGATGATGTTCTCATCAATGAAATGAGAAAGTAAGCTCCAAAAGCCAACATTAGTTTTACAAGTTATTTCACACACCCACTCCTTCAAATTTACGAATATTGGTGGAAGTTACAATAAATGTCCAGAAATGTAGAATACATGAATTGTTCTCGACACTTGTGAGTAATGGATGGCCTAATTACACGTTAAGGAACAACTTCGAAGATTCATTTAATGGTGTTTTAGCATGCATTGAGGAATAATTTCAATTTCATTGGAGATTCCTTGAACGGTTAATTGAACAACTTCAAGGAATCCTTGATCACATTAAGCAATTACTTCATGTTCATGTTCCCAAACAACTTCAAGTTCCTTGATAAGAGATTTATTGGATGGATAAATTTTGAGCTTCACGTTGATTCAGAGATTCATTAGAAAGTTAGCTTATAATTCTAAGGCGCTTTGAGAAACTTTCTCATTCAAGTTCTTATTCAGAGATTTAAAAGTAATTCTCATTCAAATTCTT

mRNA sequence

ATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATCTGTGGCAAGCCAAGGCGTAG

Coding sequence (CDS)

ATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATCTGTGGCAAGCCAAGGCGTAG

Protein sequence

MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAKA
Homology
[Close]
BLAST of CsaV3_5G038690 vs. NCBI nr
Match: XP_004141475.1 (PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus] >XP_011656017.1 PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAKA 60
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAKA
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAKA 60

[Close]
BLAST of CsaV3_5G038690 vs. NCBI nr
Match: XP_008459402.1 (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_016902393.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK 60
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK 59

[Close]
BLAST of CsaV3_5G038690 vs. NCBI nr
Match: XP_022939543.1 (uncharacterized protein LOC111445419 [Cucurbita moschata] >XP_022992929.1 uncharacterized protein LOC111489112 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK 60
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KR+LWQ K
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRHLWQGK 59

[Close]
BLAST of CsaV3_5G038690 vs. NCBI nr
Match: XP_023550233.1 (uncharacterized protein LOC111808468 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 7.3e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK 60
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VV+LMWFMFYNGSRYVND+ KR+LWQ K
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVLLMWFMFYNGSRYVNDLYKRHLWQGK 59

[Close]
BLAST of CsaV3_5G038690 vs. NCBI nr
Match: XP_022134536.1 (uncharacterized protein LOC111006754 [Momordica charantia])

HSP 1 Score: 112.8 bits (281), Expect = 4.0e-22
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGS+YVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

[Close]
BLAST of CsaV3_5G038690 vs. TAIR10
Match: AT2G30942.1 (Protein of unknown function (DUF3317))

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-22
Identity = 42/55 (76.36%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYL 56
          MNW+QRKIYLYNVTFGLYMLDWWER LFN++V++LMWF+ YNGSRY +++CKR+L
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVLILMWFILYNGSRYFSELCKRHL 55

[Close]
BLAST of CsaV3_5G038690 vs. TAIR10
Match: AT1G06515.1 (Protein of unknown function (DUF3317))

HSP 1 Score: 96.3 bits (238), Expect = 7.0e-21
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYL 56
          MNW+QRKIYLYNVTFGLYMLDWWER LFN++VVVLMWF+ YNG+RY +++ +R+L
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRHL 55

[Close]
BLAST of CsaV3_5G038690 vs. TrEMBL
Match: tr|A0A1S3C9L1|A0A1S3C9L1_CUCME (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK 60
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLWQAK 59

[Close]
BLAST of CsaV3_5G038690 vs. TrEMBL
Match: tr|A0A251KXF7|A0A251KXF7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G162000 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-21
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLW 57
          MNW+QRKIYLYNVTFGLYMLDWWER LFNT+VVVLMWF+FYNGSR+V + CKR+LW
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERCLFNTLVVVLMWFIFYNGSRFVTEFCKRHLW 56

[Close]
BLAST of CsaV3_5G038690 vs. TrEMBL
Match: tr|A9PCS1|A9PCS1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G263300v3 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLW 57
          MNW+QRKIYLYNVTFGL+MLDWWER LFN +V+VLMWF+FYNGSRYV D CKR+LW
Sbjct: 1  MNWVQRKIYLYNVTFGLFMLDWWERCLFNILVIVLMWFIFYNGSRYVTDFCKRHLW 56

[Close]
BLAST of CsaV3_5G038690 vs. TrEMBL
Match: tr|A0A2G9GP36|A0A2G9GP36_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20463 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-21
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYL 56
          MNW+QRKIYLYNVTFGLYMLDWWER LFNT+V+VLMWF+FYN SRYV D CKRYL
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVADFCKRYL 55

[Close]
BLAST of CsaV3_5G038690 vs. TrEMBL
Match: tr|A0A2P6P1F7|A0A2P6P1F7_ROSCH (Putative small subunit of serine palmitoyltransferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0176991 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLW 57
          MNW+QRKIYLYNVTFGLYMLDWWER LFNT+V+VLMWF+FYN SRY+ + CKR+LW
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVLVLMWFIFYNSSRYLTEFCKRHLW 56

The following BLAST results are available for this feature:
BLAST of CsaV3_5G038690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141475.16.4e-28100.00PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus] >XP_011656017.... [more]
XP_008459402.12.4e-27100.00PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 P... [more]
XP_022939543.13.3e-2489.83uncharacterized protein LOC111445419 [Cucurbita moschata] >XP_022992929.1 unchar... [more]
XP_023550233.17.3e-2488.14uncharacterized protein LOC111808468 [Cucurbita pepo subsp. pepo][more]
XP_022134536.14.0e-2294.34uncharacterized protein LOC111006754 [Momordica charantia][more]
BLAST of CsaV3_5G038690 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30942.11.7e-2276.36Protein of unknown function (DUF3317)[more]
AT1G06515.17.0e-2174.55Protein of unknown function (DUF3317)[more]
BLAST of CsaV3_5G038690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G038690 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C9L1|A0A1S3C9L1_CUCME1.6e-27100.00uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=... [more]
tr|A0A251KXF7|A0A251KXF7_MANES1.7e-2183.93Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G162000 PE=4 SV=... [more]
tr|A9PCS1|A9PCS1_POPTR3.8e-2182.14Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G263300v3 PE=... [more]
tr|A0A2G9GP36|A0A2G9GP36_9LAMI8.5e-2185.45Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20463 P... [more]
tr|A0A2P6P1F7|A0A2P6P1F7_ROSCH1.4e-2080.36Putative small subunit of serine palmitoyltransferase OS=Rosa chinensis OX=74649... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024512Ser_palmitoyltrfase_ssu-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G038690.1CsaV3_5G038690.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024512Small subunit of serine palmitoyltransferase-likePFAMPF11779SPT_ssu-likecoord: 1..51
e-value: 2.6E-24
score: 84.5
NoneNo IPR availablePANTHERPTHR33727FAMILY NOT NAMEDcoord: 1..57
NoneNo IPR availablePANTHERPTHR33727:SF5SUBFAMILY NOT NAMEDcoord: 1..57

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G038690Cucsa.238520Cucumber (Gy14) v1cgycucB357
CsaV3_5G038690CmaCh15G002220Cucurbita maxima (Rimu)cmacucB0353
CsaV3_5G038690CmoCh15G002330Cucurbita moschata (Rifu)cmocucB0348
CsaV3_5G038690Carg02208Silver-seed gourdcarcucB0296
CsaV3_5G038690Cla97C11G211750Watermelon (97103) v2cucwmbB374
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G038690Silver-seed gourdcarcucB0022
CsaV3_5G038690Cucumber (Gy14) v2cgybcucB232
CsaV3_5G038690Cucurbita maxima (Rimu)cmacucB0860
CsaV3_5G038690Cucurbita moschata (Rifu)cmocucB0846
CsaV3_5G038690Cucurbita pepo (Zucchini)cpecucB0210
CsaV3_5G038690Cucurbita pepo (Zucchini)cpecucB0517
CsaV3_5G038690Wild cucumber (PI 183967)cpicucB284
CsaV3_5G038690Bottle gourd (USVL1VR-Ls)cuclsiB378
CsaV3_5G038690Melon (DHL92) v3.5.1cucmeB358
CsaV3_5G038690Melon (DHL92) v3.6.1cucmedB350
CsaV3_5G038690Watermelon (Charleston Gray)cucwcgB376
CsaV3_5G038690Watermelon (97103) v1cucwmB462
CsaV3_5G038690Wax gourdcucwgoB477
CsaV3_5G038690Wax gourdcucwgoB482