Carg02208 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02208
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function (DUF3317)
Location	Cucurbita_argyrosperma_scaffold_007 : 658603 .. 659057 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGGATACAAAGGAAGGTATACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAGTATGCTCTCTGTTCTACCCCCACCTTTTCCTAACTAATGAATCCGTGATCTGTTTTATCACTTGCAAGCATGCATAGTACCCATTTCTTTATGATTTGGATTGAAGTTGTGCTACCAGTACTATTGTCCAGGCAAATCATTATTGATGTTTACTGTTTCTTGTCCTAACTAATGAATCCGTGATCTGTTTTATCACTTCTTGTTCTCACTGTTAACCTCTTGAGTTCTCCTCATATTATTGTAGATACGTTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATACGTAAATGATTTGTACAAGAGGTATTGTGTTTACCTTTGCTCTACCTTTTCATCTTCAAAATCAGAAAATTAA

mRNA sequence

ATGAATTGGATACAAAGGAAGGTATACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACGTTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATACGTAAATGATTTGTACAAGAGGTATTGTGTTTACCTTTGCTCTACCTTTTCATCTTCAAAATCAGAAAATTAA

Coding sequence (CDS)

ATGAATTGGATACAAAGGAAGGTATACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACGTTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCGCGATACGTAAATGATTTGTACAAGAGGTATTGTGTTTACCTTTGCTCTACCTTTTCATCTTCAAAATCAGAAAATTAA

Protein sequence

MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRYCVYLCSTFSSSKSEN

Homology

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BLAST of Carg02208 vs. NCBI nr
Match: XP_022939543.1 (uncharacterized protein LOC111445419 [Cucurbita moschata] >XP_022992929.1 uncharacterized protein LOC111489112 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

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BLAST of Carg02208 vs. NCBI nr
Match: XP_023550233.1 (uncharacterized protein LOC111808468 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVV+LMWFMFYNGSRYVNDLYKR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVLLMWFMFYNGSRYVNDLYKRH 54

[Close]

BLAST of Carg02208 vs. NCBI nr
Match: XP_004141475.1 (PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus] >XP_011656017.1 PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

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BLAST of Carg02208 vs. NCBI nr
Match: XP_008459402.1 (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_016902393.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of Carg02208 vs. NCBI nr
Match: XP_022134536.1 (uncharacterized protein LOC111006754 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-21
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGS+YVNDL KR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

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BLAST of Carg02208 vs. TAIR10
Match: AT1G06515.1 (Protein of unknown function (DUF3317))

HSP 1 Score: 97.1 bits (240), Expect = 4.7e-21
Identity = 41/54 (75.93%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFN+LVVVLMWF+ YNG+RY ++L++R+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRH 54

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BLAST of Carg02208 vs. TAIR10
Match: AT2G30942.1 (Protein of unknown function (DUF3317))

HSP 1 Score: 96.3 bits (238), Expect = 7.9e-21
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFN+LV++LMWF+ YNGSRY ++L KR+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVLILMWFILYNGSRYFSELCKRH 54

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BLAST of Carg02208 vs. TrEMBL
Match: tr|A0A1S3C9L1|A0A1S3C9L1_CUCME (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.7e-22
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of Carg02208 vs. TrEMBL
Match: tr|A0A1U8JXD8|A0A1U8JXD8_GOSHI (uncharacterized protein LOC107910167 OS=Gossypium hirsutum OX=3635 GN=LOC107910167 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKRH 54

[Close]

BLAST of Carg02208 vs. TrEMBL
Match: tr|A0A0D2RJ08|A0A0D2RJ08_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G107100 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR+
Sbjct: 46 MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKRH 99

[Close]

BLAST of Carg02208 vs. TrEMBL
Match: tr|A0A0D2NAM4|A0A0D2NAM4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G107100 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
           MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR+
Sbjct: 54  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKRH 107

[Close]

BLAST of Carg02208 vs. TrEMBL
Match: tr|A0A2G9GP36|A0A2G9GP36_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20463 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRY 55
          MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV D  KRY
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVADFCKRY 54

The following BLAST results are available for this feature:

BLAST of Carg02208 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939543.1	1.2e-22	98.15	uncharacterized protein LOC111445419 [Cucurbita moschata] >XP_022992929.1 unchar...	[more]
XP_023550233.1	2.6e-22	96.30	uncharacterized protein LOC111808468 [Cucurbita pepo subsp. pepo]	[more]
XP_004141475.1	1.3e-21	92.59	PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus] >XP_011656017....	[more]
XP_008459402.1	1.3e-21	92.59	PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 P...	[more]
XP_022134536.1	6.5e-21	94.34	uncharacterized protein LOC111006754 [Momordica charantia]	[more]

BLAST of Carg02208 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06515.1	4.7e-21	75.93	Protein of unknown function (DUF3317)	[more]
AT2G30942.1	7.9e-21	75.93	Protein of unknown function (DUF3317)	[more]

BLAST of Carg02208 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02208 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9L1\|A0A1S3C9L1_CUCME	8.7e-22	92.59	uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=...	[more]
tr\|A0A1U8JXD8\|A0A1U8JXD8_GOSHI	4.0e-19	81.48	uncharacterized protein LOC107910167 OS=Gossypium hirsutum OX=3635 GN=LOC1079101...	[more]
tr\|A0A0D2RJ08\|A0A0D2RJ08_GOSRA	4.0e-19	81.48	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G1...	[more]
tr\|A0A0D2NAM4\|A0A0D2NAM4_GOSRA	4.0e-19	81.48	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G1...	[more]
tr\|A0A2G9GP36\|A0A2G9GP36_9LAMI	6.9e-19	83.33	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20463 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024512	Ser_palmitoyltrfase_ssu-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02208-RA	Carg02208-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024512	Small subunit of serine palmitoyltransferase-like	PFAM	PF11779	SPT_ssu-like	coord: 1..50 e-value: 2.7E-23 score: 81.2
None	No IPR available	PANTHER	PTHR33727:SF5	SUBFAMILY NOT NAMED	coord: 1..66
None	No IPR available	PANTHER	PTHR33727	FAMILY NOT NAMED	coord: 1..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02208	Cucsa.238520	Cucumber (Gy14) v1	carcgyB0316
Carg02208	CmaCh15G002220	Cucurbita maxima (Rimu)	carcmaB0362
Carg02208	CmoCh15G002330	Cucurbita moschata (Rifu)	carcmoB0362
Carg02208	CsaV3_5G038690	Cucumber (Chinese Long) v3	carcucB0296
Carg02208	Cla97C11G211750	Watermelon (97103) v2	carwmbB0269

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02208	Silver-seed gourd	carcarB020
Carg02208	Cucumber (Gy14) v2	carcgybB0280
Carg02208	Cucurbita maxima (Rimu)	carcmaB0365
Carg02208	Cucurbita maxima (Rimu)	carcmaB0374
Carg02208	Cucurbita moschata (Rifu)	carcmoB0370
Carg02208	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02208	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02208	Wild cucumber (PI 183967)	carcpiB0297
Carg02208	Cucumber (Chinese Long) v2	carcuB0293
Carg02208	Bottle gourd (USVL1VR-Ls)	carlsiB236
Carg02208	Melon (DHL92) v3.5.1	carmeB0260
Carg02208	Melon (DHL92) v3.6.1	carmedB0270
Carg02208	Watermelon (Charleston Gray)	carwcgB0254
Carg02208	Watermelon (Charleston Gray)	carwcgB0255
Carg02208	Watermelon (97103) v1	carwmB0260
Carg02208	Wax gourd	carwgoB0339
Carg02208	Wax gourd	carwgoB0345