CmaCh15G002220 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G002220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_26
LocationCma_Chr15 : 1101184 .. 1103976 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTATATACTTTGAAGAAAACGAGCGCCGTTTTCCGTTGTCCCGCGAAACTTGGAGATGGGTCAAGGTTAGTTTTGGGCCAGGCTTACCCCTGCCCTCCCTTCGGGAGGATAGTTATGTAATTTTGTGGAATAAATAGGGTATAAATAGAGGACGAGGCGAAAATAGGGGTACGGCAGACTAATTTTTCATTGATTTCCAGAAGCTTTTGTACCTCTGAAGCTTCCAGGCAGAGCTCTCGAATCAAGCCTTCCTCAATTTTCATTTCTATCCGTTGCATGAAAGGTGAGACGAATTAGGTCATAAAAACAGCTTCAATTTGATAATTTCTTGTTAAAGTTCATCTGTAGTCTTTCTAATCTGTCTGGAATTCATCATTTCCTGCTTGATTCCGCCCCCCTTTCAAGCAAAAGCGAGTATTTCTCCTTTCTACTATGACTTCTGCAGCGAACGTGGGAAAAACCGCATGAAAACTCATTAATTTTCGATTCCCTTTCGTTTATGGAACCGGCTCTTTTTGAGCAATTTCTCTTTTTTCGTGTCTATGGGTTCTTAGATCTGTGTTTGCTTTTAGAATTGACTTTGAAGGAGGAATCCGAAAATTTTCTGTTCCTTGCTATTTGTTGATGCTCGATCGAGAAGTTTGGCAATAGAATATGGTCTCCGCTCGATCTAGTACTTTAATTTTTTATGATGAGATTTGGACGTCGGAGGAGCAAAAGGAAAACAAAATTCTTTCTTAACATATGTTTCTTCGTCCGATTATGCTACTTATGTTTAACGCGGCCAAATATACGGCCCTTCATGACCAATAAACCTCTTGTTTCATCATCCGTTTCCCCATACTTCCATTACCTGAAATTTTAGATTGAAGTTGACTTGGCGGTTGCTTCTTGCTTGTAGGTTTTCTATAGTCATGAATTGGATACAAAGGAAGGTCTACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAGTATGCTCTCTGTTCTACCCCACCTTTTCCTAACTAATGGATCCGTGATCTGTTTTATCACTTGCTAGCATGCATAGTACCCATTTCTTTTGATTTGGATTGAAATTGTGCTGCCAGTACTATTGTCCAGGCAAATCATTATTGATATTTACTGTTTCTTTTGTTCGCGTTAAGGTTTAATCTTATTTTCTATTGTTAAAGTTAGATCCTGCTGTTTGGATTTGATTGTCAAATGGTTATATGCTATCTAATCTTAATTATACTTGTTATGTGTGCCTGTGTCTTATATTTACTGGATTTATGATTTTGTCTGATCAGGAGTTGAATTTCATTGGTTCAGATATTGTTGTGAGATCAAATTTTGTTCGCGCAAATCTTACTTCTTGTTCTTACTGTTAAACTCTTGAATTCTCCACATATTATTGTAGATACATTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCACGATACGTAAATGATCTGTACAAGAGGTATTGTGTTTACCTTTGCTCTACCTTTTCCTTTTCAAAATCAGAAAATAAAGTATTTATGACAATTGATTGCACGTGTTGTAATAGACTTTGATAATCCAACAACCAAAGAAAATATAGTAGTACCACTTTCAGATGACCTAAGTTCGGTAGACGGCAATTTCATATTTGTTCTTGCAGATTTAATAATAAAAATATTTTTGTAGACTGTAATTTATAAGAATGGAACATACAAGGGGGGAATCTTATTCTGAAAGAGTGAAAAGCACATGGTTTATAGAAGTAGAACATATAGGGGGATAATCTAATTCCAAAGGATCGAAACGAACACTGCAACTCAAAGTATTCGAGGGATGAGGATAGTTAGAGAACTCTTTGGAGGAGAAAGCTCCAAGAGGAGAACACCAAATCAATGTCGCCCCAAATCTTTATAGGGTTCCTTTCCTTTTAATATATCCTATAGCGATCTCCTACTCATTTGTAATAAAGTTCTGGCGAAATAGCCTTATTGTTTCTGAAGATTTATGTTTTGCCAATCCAACACAAGTAAAAGAATATCTTAAAACAAAATATGCTATATATCTGGGCATTTTTTGAGTTGGAAACTGAAGCAAGAATCTCATAGCCTATCTTATTGAGAAGAATATCTGAGTTTTTGGATATATTCATGAGTGTTTCTCGAGAATGGCTTTTGGAACAATAGGAAAATTATTTGGATGCTTGGTTCTATACTCTACAATTTTCATACAATCAAAGTTTAAATTGAAAGTATGTTTCGGAATGGTTTTGAACATGACGAAAGTGATTTAAGCCATTTTAAAATCACTCTCAAACATTTATCACGTTATGGTTGTGTATTAATTTTGTCAGTTCTTCTTCTTTATCTCATCACAAGCCAACTGTTGTAATTGATTACTGTTCTACCTTTATTATCCAATCCCATACCGTTAAACCTTTTCATTCTTAATCATGCATCTTCCTTCCATCATCTGCATCTCAGGCATCTGTGGCAAGGCAAGGTGTAGGAGCCAAATGCAATGGATGCAGAGACAATTGTGCCCAATGGGGGGAGAGGTTCAGGGCTGTCATCGTTAATTTTGAATGGAACATTGCAGTGTTATGTAACCTGTTTGTATTAACTTGCTCGAAATCTGGTTCGAAACTGATTTCCACATTTGAATGAATTGCTTGCTCTAAGTTCGACAGTGTAATTGATGTTATATTTGTTGAATCAGGATCTGGTCAGAATTAAGAAAATACAAAACTTCTTTTCTTGTCTTCTTCTGA

mRNA sequence

ATGAATTTATATACTTTGAAGAAAACGAGCGCCGTTTTCCGTTGTCCCGCGAAACTTGGAGATGGGTCAAGCTTCCAGGCAGAGCTCTCGAATCAAGCCTTCCTCAATTTTCATTTCTATCCGTTGCATGAAAGGTTTTCTATAGTCATGAATTGGATACAAAGGAAGGTCTACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACATTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCACGATACGTAAATGATCTGTACAAGAGGATCTGGTCAGAATTAAGAAAATACAAAACTTCTTTTCTTGTCTTCTTCTGA

Coding sequence (CDS)

ATGAATTTATATACTTTGAAGAAAACGAGCGCCGTTTTCCGTTGTCCCGCGAAACTTGGAGATGGGTCAAGCTTCCAGGCAGAGCTCTCGAATCAAGCCTTCCTCAATTTTCATTTCTATCCGTTGCATGAAAGGTTTTCTATAGTCATGAATTGGATACAAAGGAAGGTCTACCTTTACAATGTCACTTTTGGGCTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACATTGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCACGATACGTAAATGATCTGTACAAGAGGATCTGGTCAGAATTAAGAAAATACAAAACTTCTTTTCTTGTCTTCTTCTGA

Protein sequence

MNLYTLKKTSAVFRCPAKLGDGSSFQAELSNQAFLNFHFYPLHERFSIVMNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRIWSELRKYKTSFLVFF
Homology
[Close]
BLAST of CmaCh15G002220 vs. TrEMBL
Match: A0A0D2RJ08_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G107100 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR
Sbjct: 46  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKR 98

[Close]
BLAST of CmaCh15G002220 vs. TrEMBL
Match: A0A0D2NAM4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G107100 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR
Sbjct: 54  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKR 106

[Close]
BLAST of CmaCh15G002220 vs. TrEMBL
Match: M5W4D2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014545mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFNTLVVVLMWF+FYNGSRYV +  KR
Sbjct: 1   MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVVVLMWFIFYNGSRYVTEFCKR 53

[Close]
BLAST of CmaCh15G002220 vs. TrEMBL
Match: A0A022QYX6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017606mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-18
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV D  KR
Sbjct: 1   MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVADFCKR 53

[Close]
BLAST of CmaCh15G002220 vs. TrEMBL
Match: A0A059BYN3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04183 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRIWSELRK 109
           MNWIQRK+YLYNVTFGL+MLDWWER LFNTLV+VLMWF+FYN SRYV    K I+ E  +
Sbjct: 1   MNWIQRKIYLYNVTFGLFMLDWWERYLFNTLVIVLMWFLFYNTSRYVTTFCKSIYGEAHQ 60

Query: 110 YK 112
           ++
Sbjct: 61  FE 62

[Close]
BLAST of CmaCh15G002220 vs. TAIR10
Match: AT1G06515.1 (AT1G06515.1 Protein of unknown function (DUF3317))

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-20
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFN+LVVVLMWF+ YNG+RY ++L++R
Sbjct: 1   MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQR 53

[Close]
BLAST of CmaCh15G002220 vs. TAIR10
Match: AT2G30942.1 (AT2G30942.1 Protein of unknown function (DUF3317))

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-20
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFN+LV++LMWF+ YNGSRY ++L KR
Sbjct: 1   MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVLILMWFILYNGSRYFSELCKR 53

[Close]
BLAST of CmaCh15G002220 vs. NCBI nr
Match: gi|449447438|ref|XP_004141475.1| (PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-21
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR-IW 105
           MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KR +W
Sbjct: 1   MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLW 56

[Close]
BLAST of CmaCh15G002220 vs. NCBI nr
Match: gi|659118966|ref|XP_008459402.1| (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-21
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR-IW 105
           MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KR +W
Sbjct: 1   MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYLW 56

[Close]
BLAST of CmaCh15G002220 vs. NCBI nr
Match: gi|1000967448|ref|XP_015574329.1| (PREDICTED: uncharacterized protein LOC8280959 isoform X2 [Ricinus communis])

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-19
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRIWSELRK 109
           MNWIQRK+YLYNVTFGLYMLDWWER LFNTLVVVLMWF+FYNGSRYV ++ KR  + L  
Sbjct: 1   MNWIQRKIYLYNVTFGLYMLDWWERCLFNTLVVVLMWFIFYNGSRYVTEVSKRFSAILST 60

Query: 110 YKTSFLV 117
               +LV
Sbjct: 61  IFVPYLV 67

[Close]
BLAST of CmaCh15G002220 vs. NCBI nr
Match: gi|823156299|ref|XP_012478080.1| (PREDICTED: uncharacterized protein LOC105793779 [Gossypium raimondii])

HSP 1 Score: 101.7 bits (252), Expect = 9.2e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR
Sbjct: 1   MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKR 53

[Close]
BLAST of CmaCh15G002220 vs. NCBI nr
Match: gi|763762303|gb|KJB29557.1| (hypothetical protein B456_005G107100, partial [Gossypium raimondii])

HSP 1 Score: 101.7 bits (252), Expect = 9.2e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 50  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 103
           MNW+QRK+YLYNVTFGLYMLDWWER LFNTLV+VLMWF+FYN SRYV + YKR
Sbjct: 54  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVIVLMWFIFYNSSRYVTEFYKR 106

The following BLAST results are available for this feature:
BLAST of CmaCh15G002220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G002220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2RJ08_GOSRA6.4e-1983.02Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G107100 PE=... [more]
A0A0D2NAM4_GOSRA6.4e-1983.02Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G107100 PE=... [more]
M5W4D2_PRUPE1.1e-1884.91Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014545mg PE=4 SV=1[more]
A0A022QYX6_ERYGU4.1e-1883.02Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017606mg PE=4 SV=1[more]
A0A059BYN3_EUCGR5.4e-1870.97Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04183 PE=4 SV=1[more]
BLAST of CmaCh15G002220 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06515.11.4e-2077.36 Protein of unknown function (DUF3317)[more]
AT2G30942.12.3e-2077.36 Protein of unknown function (DUF3317)[more]
BLAST of CmaCh15G002220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447438|ref|XP_004141475.1|7.5e-2189.29PREDICTED: uncharacterized protein LOC101207494 [Cucumis sativus][more]
gi|659118966|ref|XP_008459402.1|7.5e-2189.29PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo][more]
gi|1000967448|ref|XP_015574329.1|5.4e-1973.13PREDICTED: uncharacterized protein LOC8280959 isoform X2 [Ricinus communis][more]
gi|823156299|ref|XP_012478080.1|9.2e-1983.02PREDICTED: uncharacterized protein LOC105793779 [Gossypium raimondii][more]
gi|763762303|gb|KJB29557.1|9.2e-1983.02hypothetical protein B456_005G107100, partial [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024512Ser_palmitoyltrfase_ssu-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G002220.1CmaCh15G002220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024512Small subunit of serine palmitoyltransferase-likePFAMPF11779DUF3317coord: 50..99
score: 7.7
NoneNo IPR availablePANTHERPTHR33727FAMILY NOT NAMEDcoord: 41..108
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G002220Cucsa.238520Cucumber (Gy14) v1cgycmaB0660
CmaCh15G002220CmoCh15G002330Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G002220CsaV3_5G038690Cucumber (Chinese Long) v3cmacucB0353
CmaCh15G002220Cla97C11G211750Watermelon (97103) v2cmawmbB296
CmaCh15G002220Carg02208Silver-seed gourdcarcmaB0362
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G002220Wax gourdcmawgoB0380
CmaCh15G002220Wax gourdcmawgoB0385
CmaCh15G002220Cucurbita maxima (Rimu)cmacmaB324
CmaCh15G002220Cucumber (Gy14) v1cgycmaB0266
CmaCh15G002220Cucurbita moschata (Rifu)cmacmoB308
CmaCh15G002220Wild cucumber (PI 183967)cmacpiB280
CmaCh15G002220Wild cucumber (PI 183967)cmacpiB304
CmaCh15G002220Cucumber (Chinese Long) v2cmacuB299
CmaCh15G002220Melon (DHL92) v3.5.1cmameB251
CmaCh15G002220Melon (DHL92) v3.5.1cmameB259
CmaCh15G002220Melon (DHL92) v3.5.1cmameB262
CmaCh15G002220Watermelon (Charleston Gray)cmawcgB252
CmaCh15G002220Watermelon (97103) v1cmawmB284
CmaCh15G002220Cucurbita pepo (Zucchini)cmacpeB304
CmaCh15G002220Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G002220Cucurbita pepo (Zucchini)cmacpeB317
CmaCh15G002220Bottle gourd (USVL1VR-Ls)cmalsiB276
CmaCh15G002220Cucumber (Gy14) v2cgybcmaB609
CmaCh15G002220Melon (DHL92) v3.6.1cmamedB285
CmaCh15G002220Silver-seed gourdcarcmaB0030