CsaV3_5G025520 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G025520
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cysteine proteinase inhibitor
Location	chr5 : 20647618 .. 20648459 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTCTAAACACCTTCTCGCTAGCTACTATTCCTTCATTTACTTCATAAAAATTAGATTCGATGACATCAATTGGTAGAACATTGAACGCCAACACTATAAATATGGAACCCGTTCCCATGCATATTATATTCAAAAGCAATTAAACATAGTCTGTTCCAAAGTATACATATCTGTCGTGGAAAGGTGTTAGCAATGTGTTCTAGGAATTTTGATGTTCCTCCAGTGCCAATTAAGGATATTGATTCTGCAGAAATTCAAGGATATGCAAGGTTTGCAACAGAAAGGCATAATGAAATTACAGGTGACAAACTGCAGTTCCAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTCGGTCAAATATGTTTCACGCTTGTGTTGGAAGCTATAAACTCTGGTGGATTTCTTTGGACTTATACAGCTATAGTATTTTACAATCAACGGGCAGCGTTACAACTCATGGAATTTGGACCTGTTCTTCCTGAGCATTTACAACACTAAACTAGCTGCTACTTAACAATATACAACCACATATATATATACCTATATATATATACCTATATATATATACCTACATATATATATATATATAAATAAAATAGAATTATGATACTTACCTTTGTTTCTTGTCTCTCTCAATTAGGTCTCTTTCCCTTTCATGTTCTCTAATCTTGTCCCGCATATATACATGTACTTCACTTTGTAAGGGCACTTATAAAAATAGCAAAAGAAATTATGATAATAAGACTCGTGTCACTACATTTTCCAAATTGTAAAAGTAGCAAATTTAAAACTGATAGTCCTTTAATAACAGTCCGATAGCTTTTTGATAACCC

mRNA sequence

ATGTGTTCTAGGAATTTTGATGTTCCTCCAGTGCCAATTAAGGATATTGATTCTGCAGAAATTCAAGGATATGCAAGGTTTGCAACAGAAAGGCATAATGAAATTACAGGTGACAAACTGCAGTTCCAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTCGGTCAAATATGTTTCACGCTTGTGTTGGAAGCTATAAACTCTGGTGGATTTCTTTGGACTTATACAGCTATAGTATTTTACAATCAACGGGCAGCGTTACAACTCATGGAATTTGGACCTGTTCTTCCTGAGCATTTACAACACTAA

Coding sequence (CDS)

ATGTGTTCTAGGAATTTTGATGTTCCTCCAGTGCCAATTAAGGATATTGATTCTGCAGAAATTCAAGGATATGCAAGGTTTGCAACAGAAAGGCATAATGAAATTACAGGTGACAAACTGCAGTTCCAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTCGGTCAAATATGTTTCACGCTTGTGTTGGAAGCTATAAACTCTGGTGGATTTCTTTGGACTTATACAGCTATAGTATTTTACAATCAACGGGCAGCGTTACAACTCATGGAATTTGGACCTGTTCTTCCTGAGCATTTACAACACTAA

Protein sequence

MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRFGQICFTLVLEAINSGGFLWTYTAIVFYNQRAALQLMEFGPVLPEHLQH

Homology

[Close]

BLAST of CsaV3_5G025520 vs. NCBI nr
Match: KGN51190.1 (Cystatin [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRF 56
          MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR +
Sbjct: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRSY 55

[Close]

BLAST of CsaV3_5G025520 vs. NCBI nr
Match: KGN51192.1 (hypothetical protein Csa_5G487690 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 9   PPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRFGQICFTLVLEAIN 68
           P VPIKD+DS EI+G+  FA   HNE TG+ L+F + INGLEQGRR  +I FTLVL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 69  SGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           S G +WTY   VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]

BLAST of CsaV3_5G025520 vs. NCBI nr
Match: KGN51193.1 (hypothetical protein Csa_5G487700 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 3.2e-19
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 7   DVPPVPIKDIDSAEIQGYARFATERHNEI-TGDKLQFQRAINGLEQGRRFGQICFTLVLE 66
           D   VPIKD+DS EIQG    A   HNE  TG+ L+F + INGLE+GRR  QI +TLVL 
Sbjct: 17  DYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLVLS 76

Query: 67  AINSGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           A NS G +WTY A V +N RAA++L EF  VLPE+
Sbjct: 77  AKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPEN 111

[Close]

BLAST of CsaV3_5G025520 vs. TrEMBL
Match: tr|A0A0A0KNH4|A0A0A0KNH4_CUCSA (Cystatin OS=Cucumis sativus OX=3659 GN=Csa_5G485690 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRF 56
          MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR +
Sbjct: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRSY 55

[Close]

BLAST of CsaV3_5G025520 vs. TrEMBL
Match: tr|A0A0A0KRZ8|A0A0A0KRZ8_CUCSA (Cysteine proteinase inhibitor OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 9   PPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRFGQICFTLVLEAIN 68
           P VPIKD+DS EI+G+  FA   HNE TG+ L+F + INGLEQGRR  +I FTLVL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 69  SGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           S G +WTY   VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]

BLAST of CsaV3_5G025520 vs. TrEMBL
Match: tr|A0A0A0KNL2|A0A0A0KNL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 7   DVPPVPIKDIDSAEIQGYARFATERHNEI-TGDKLQFQRAINGLEQGRRFGQICFTLVLE 66
           D   VPIKD+DS EIQG    A   HNE  TG+ L+F + INGLE+GRR  QI +TLVL 
Sbjct: 17  DYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLVLS 76

Query: 67  AINSGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           A NS G +WTY A V +N RAA++L EF  VLPE+
Sbjct: 77  AKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPEN 111

The following BLAST results are available for this feature:

BLAST of CsaV3_5G025520 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51190.1	1.8e-22	96.36	Cystatin [Cucumis sativus]	[more]
KGN51192.1	1.5e-21	58.70	hypothetical protein Csa_5G487690 [Cucumis sativus]	[more]
KGN51193.1	3.2e-19	56.84	hypothetical protein Csa_5G487700 [Cucumis sativus]	[more]

BLAST of CsaV3_5G025520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G025520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G025520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNH4\|A0A0A0KNH4_CUCSA	1.2e-22	96.36	Cystatin OS=Cucumis sativus OX=3659 GN=Csa_5G485690 PE=4 SV=1	[more]
tr\|A0A0A0KRZ8\|A0A0A0KRZ8_CUCSA	1.0e-21	58.70	Cysteine proteinase inhibitor OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE=3 SV...	[more]
tr\|A0A0A0KNL2\|A0A0A0KNL2_CUCSA	2.1e-19	56.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004869	cysteine-type endopeptidase inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR000010	Cystatin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010951	negative regulation of endopeptidase activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G025520.1	CsaV3_5G025520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 13..87 e-value: 2.6E-8 score: 34.0
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 8..103 e-value: 2.0E-11 score: 45.7
None	No IPR available	PRODOM	PD001231		coord: 18..96 e-value: 4.0E-4 score: 97.0
None	No IPR available	SUPERFAMILY	SSF54403	Cystatin/monellin	coord: 13..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G025520	CSPI05G16500	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G025520	Cucsa.275310	Cucumber (Gy14) v1	cgycucB422
CsaV3_5G025520	CsGy5G016200	Cucumber (Gy14) v2	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G025520	Cucurbita maxima (Rimu)	cmacucB0892
CsaV3_5G025520	Cucurbita maxima (Rimu)	cmacucB0947
CsaV3_5G025520	Cucurbita moschata (Rifu)	cmocucB0205
CsaV3_5G025520	Cucurbita moschata (Rifu)	cmocucB0935
CsaV3_5G025520	Cucurbita pepo (Zucchini)	cpecucB0129
CsaV3_5G025520	Cucurbita pepo (Zucchini)	cpecucB0550
CsaV3_5G025520	Cucurbita pepo (Zucchini)	cpecucB1028
CsaV3_5G025520	Bottle gourd (USVL1VR-Ls)	cuclsiB370
CsaV3_5G025520	Melon (DHL92) v3.5.1	cucmeB359
CsaV3_5G025520	Melon (DHL92) v3.6.1	cucmedB351
CsaV3_5G025520	Wax gourd	cucwgoB484
CsaV3_5G025520	Silver-seed gourd	carcucB1110