CsaV3_5G025520.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G025520.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCysteine proteinase inhibitor
Locationchr5 : 20647618 .. 20648459 (-)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTCTAAACACCTTCTCGCTAGCTACTATTCCTTCATTTACTTCATAAAAATTAGATTCGATGACATCAATTGGTAGAACATTGAACGCCAACACTATAAATATGGAACCCGTTCCCATGCATATTATATTCAAAAGCAATTAAACATAGTCTGTTCCAAAGTATACATATCTGTCGTGGAAAGGTGTTAGCAATGTGTTCTAGGAATTTTGATGTTCCTCCAGTGCCAATTAAGGATATTGATTCTGCAGAAATTCAAGGATATGCAAGGTTTGCAACAGAAAGGCATAATGAAATTACAGGTGACAAACTGCAGTTCCAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTCGGTCAAATATGTTTCACGCTTGTGTTGGAAGCTATAAACTCTGGTGGATTTCTTTGGACTTATACAGCTATAGTATTTTACAATCAACGGGCAGCGTTACAACTCATGGAATTTGGACCTGTTCTTCCTGAGCATTTACAACACTAAACTAGCTGCTACTTAACAATATACAACCACATATATATATACCTATATATATATACCTATATATATATACCTACATATATATATATATATAAATAAAATAGAATTATGATACTTACCTTTGTTTCTTGTCTCTCTCAATTAGGTCTCTTTCCCTTTCATGTTCTCTAATCTTGTCCCGCATATATACATGTACTTCACTTTGTAAGGGCACTTATAAAAATAGCAAAAGAAATTATGATAATAAGACTCGTGTCACTACATTTTCCAAATTGTAAAAGTAGCAAATTTAAAACTGATAGTCCTTTAATAACAGTCCGATAGCTTTTTGATAACCC

mRNA sequence

ATGTGTTCTAGGAATTTTGATGTTCCTCCAGTGCCAATTAAGGATATTGATTCTGCAGAAATTCAAGGATATGCAAGGTTTGCAACAGAAAGGCATAATGAAATTACAGGTGACAAACTGCAGTTCCAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTCGGTCAAATATGTTTCACGCTTGTGTTGGAAGCTATAAACTCTGGTGGATTTCTTTGGACTTATACAGCTATAGTATTTTACAATCAACGGGCAGCGTTACAACTCATGGAATTTGGACCTGTTCTTCCTGAGCATTTACAACACTAA

Coding sequence (CDS)

ATGTGTTCTAGGAATTTTGATGTTCCTCCAGTGCCAATTAAGGATATTGATTCTGCAGAAATTCAAGGATATGCAAGGTTTGCAACAGAAAGGCATAATGAAATTACAGGTGACAAACTGCAGTTCCAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTCGGTCAAATATGTTTCACGCTTGTGTTGGAAGCTATAAACTCTGGTGGATTTCTTTGGACTTATACAGCTATAGTATTTTACAATCAACGGGCAGCGTTACAACTCATGGAATTTGGACCTGTTCTTCCTGAGCATTTACAACACTAA

Protein sequence

MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRFGQICFTLVLEAINSGGFLWTYTAIVFYNQRAALQLMEFGPVLPEHLQH
Homology
[Close]
BLAST of CsaV3_5G025520.1 vs. NCBI nr
Match: KGN51190.1 (Cystatin [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRF 56
          MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR +
Sbjct: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRSY 55

[Close]
BLAST of CsaV3_5G025520.1 vs. NCBI nr
Match: KGN51192.1 (hypothetical protein Csa_5G487690 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 0 

Query: 9   PPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRFGQICFTLVLEAIN 68
           P VPIKD+DS EI+G+  FA   HNE TG+ L+F + INGLEQGRR  +I FTLVL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 69  SGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           S G +WTY   VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]
BLAST of CsaV3_5G025520.1 vs. NCBI nr
Match: KGN51193.1 (hypothetical protein Csa_5G487700 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 3.2e-19
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 0 

Query: 7   DVPPVPIKDIDSAEIQGYARFATERHNEI-TGDKLQFQRAINGLEQGRRFGQICFTLVLE 66
           D   VPIKD+DS EIQG    A   HNE  TG+ L+F + INGLE+GRR  QI +TLVL 
Sbjct: 17  DYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLVLS 76

Query: 67  AINSGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           A NS G +WTY A V +N RAA++L EF  VLPE+
Sbjct: 77  AKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPEN 111

[Close]
BLAST of CsaV3_5G025520.1 vs. TrEMBL
Match: tr|A0A0A0KNH4|A0A0A0KNH4_CUCSA (Cystatin OS=Cucumis sativus OX=3659 GN=Csa_5G485690 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRF 56
          MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR +
Sbjct: 1  MCSRNFDVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRSY 55

[Close]
BLAST of CsaV3_5G025520.1 vs. TrEMBL
Match: tr|A0A0A0KRZ8|A0A0A0KRZ8_CUCSA (Cysteine proteinase inhibitor OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 0 

Query: 9   PPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGRRFGQICFTLVLEAIN 68
           P VPIKD+DS EI+G+  FA   HNE TG+ L+F + INGLEQGRR  +I FTLVL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 69  SGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           S G +WTY   VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]
BLAST of CsaV3_5G025520.1 vs. TrEMBL
Match: tr|A0A0A0KNL2|A0A0A0KNL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 0 

Query: 7   DVPPVPIKDIDSAEIQGYARFATERHNEI-TGDKLQFQRAINGLEQGRRFGQICFTLVLE 66
           D   VPIKD+DS EIQG    A   HNE  TG+ L+F + INGLE+GRR  QI +TLVL 
Sbjct: 17  DYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLVLS 76

Query: 67  AINSGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 101
           A NS G +WTY A V +N RAA++L EF  VLPE+
Sbjct: 77  AKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPEN 111

The following BLAST results are available for this feature:
BLAST of CsaV3_5G025520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51190.11.8e-2296.36Cystatin [Cucumis sativus][more]
KGN51192.11.5e-2158.70hypothetical protein Csa_5G487690 [Cucumis sativus][more]
KGN51193.13.2e-1956.84hypothetical protein Csa_5G487700 [Cucumis sativus][more]
BLAST of CsaV3_5G025520.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025520.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025520.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KNH4|A0A0A0KNH4_CUCSA1.2e-2296.36Cystatin OS=Cucumis sativus OX=3659 GN=Csa_5G485690 PE=4 SV=1[more]
tr|A0A0A0KRZ8|A0A0A0KRZ8_CUCSA1.0e-2158.70Cysteine proteinase inhibitor OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE=3 SV... [more]
tr|A0A0A0KNL2|A0A0A0KNL2_CUCSA2.1e-1956.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004869cysteine-type endopeptidase inhibitor activity
Vocabulary: INTERPRO
TermDefinition
IPR000010Cystatin_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_5G025520CsaV3_5G025520gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G025520.1.cds1CsaV3_5G025520.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G025520.1.exon1CsaV3_5G025520.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_5G025520.1CsaV3_5G025520.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000010Cystatin domainPFAMPF16845SQAPIcoord: 13..87
e-value: 2.6E-8
score: 34.0
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 8..103
e-value: 2.0E-11
score: 45.7
NoneNo IPR availablePRODOMPD001231coord: 18..96
e-value: 4.0E-4
score: 97.0
NoneNo IPR availableSUPERFAMILYSSF54403Cystatin/monellincoord: 13..97