CsaV3_5G024970 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G024970
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	rRNA-processing protein UTP23 homolog
Location	chr5 : 19959309 .. 19965527 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAGATAAATTAAATCCAGATTTAGATAAAAAGGAAAGAAAATTTAAATTTAGGTTTCCTTCTTGGAACCCATCCCCCTCGTTGTCCAGCACCGATCACCGTCCGCCACCCATCGGGCCTCCGTCTCCGTCTGCTACCGAACATTTGCAGCCCGCGCCTCCGCACCCTGGTGACAGCACCGTCTCTTTCTCTCTTTATTCCCTAGATTTCTCTCTCCCTCTCTGTATCTAGTTTCTCCCTCGCAGCCATCCACGTCCAGTCGCGCCGCTGCCCGTGGTCGTCAGCCACACCGTCGATCGTCTGCCTTAATCTTGATTATTGGGGCTGGCTTTAAAGTCTTGAGGGATAGAAGCTTCTGTCCAACAGATTAAAGATCAGGTTTTCTACATTTTGTTGAGATTCTAAAGTTTTAGAACTCTTTTGGACTTGGTTATATTGTTGTAATTTTGTGTTAAACCCTTAAATGTGGTTTATATTTAGGTTGGTTTCTGCATTCGCAGCTTCGGTGAAATTTCGGATTTGGCAAACGTTGGGGGTAATTGACTTGGGAATAAATTTGCTTGCTTTTTGGGCTCAGTCTCGAGGTAAGTAAGTTTACTACCGGAATATTTTTTAGCATCCTAGTTTAGATAAATTGTTACGCCGTATAGGTTGTAGAAGCATGCCATGTGATGTTTGAGATAATTGGCTATGTTAGTGTGGATGAGAAGATTGTTATGAGCATGTTGAACTCTATGTATTACAGTAAAATGTATGTAGTATGAAATCATGATGGTTGCTACGATGTATGAAGGGAATGAGTAATATGTAGGTGTGAACTTTGATTTATGACATGGTTCCCGTTGAAAATATGTTGCATGTTAGTTAAGTTCGTGATGATCTACCCTCCTATCAGTTAATGCTATCATGTATGACTGTAAATCGTTGGGTTCACTACCACATTATGACTGTGAGCCGATGGGTGGGTTCACGTTCACCACAATGTATCATTCTGTGCCTTCCAGCCACCAGTTATGTGTGATAGAATGGGATAGATTATTCACTTAGATGACCATCGAAGATCAATTATAGTATACATGTTCATTAGTATGAATGCACAGCCTGACCCAGCACTGGAGTTTCTTTGAAGTTAATGTGTACTTAACGTGAAGAAGCTCTTTTAAAACTACCTAGTTTAGTTACTGTGATGAAGGAGGGAAGCTAAGTAGTTTGAAAAAGGGGCCTTAGACATAAAGTGAAAAAGAAAGCTTCTTGAGTTTTTCTGTCTTACCAAATATCTATGAGGAAAAGAAAAAGTATCTAGAAAAGATTTTATTATTTTGAGAAGATGAAGGAAATTAATGTTTTGAGACTACCAGTACATAAGTTTAGTTTGACTTTCTAACATGGGATTTGGATCTGTTTGAAGTCGGTATAAGTAATCTGGTTACTTCTTGGAACTTTGGATCTTCACATGTGTTGGTTCAATAACTAACTTGCTTAGGCTATTGGTCATGGAACCCAACCTTAGCCTGAGAATCTTCTTCTTAAAATAAAGATTAAGCAGTAACAATCAAGTGTTGGAGGTGTGTTTGGTAAGCTTCAAATTATAGAGTAGTTGAAGGAAAAAAAATCTTTTAGGTGGAGTTGTAAGTAAGTAACAACAGTCTTTTAGAAGCTATTGAAATGGAAGGTTAGGGTTTGTTATTAAAAAGTCAGTTATTGAAGGTATCAACAAGGTTTAAGAGACTTTCATTTTGGCGCACAAATTAGAACATGAAACTAGTGAAGCCATCAATTTGATTTAAAGGTGGATGTAATCTAGTTCAAAGTGAAGATTCAGTTCTATGGGTGTTAAGGTCAAATAAGTTAACTTTTCAATATGATCTCTAGCACAAGAGATGAACTTGAGAATAAAGCACTTGCATTAATAAGGCTGATTATAAATCAGTTCTAACAGAGTTGAATATCAAGTCGATACATGAACTGTTTGACATGGTTTTCTTACGTCCTGATCTTTTGTCTTAAGTGCTCACATTTTGTTCATTAGGGAAGAAAGAAGGATAAATGCAACTTTTTCAACTATCAAGAGTTGTTATGGTAGCATAGCCAGGTTGCAGGCAATGCGGGGGAATGTGGGTCCATTAGGTACCAAATCTAGATTCTGAATCTTGGGCTTAGGGTGCTATGGATAGTATGCTCTCTCTTGCATGGGCAATAAGTTGATCAACTCTATGGAGATGAATATTCTCAATATGGATTTATGAGTTGGGATTATTTTTATTTTAAAGGCTATCTTAAAAAACTAGTTACAGTTGGTTATGGGGATGTGTTTGGAAAGAAGTTCTAATGAATAATATCTCAAAAATCTGCTTATTAACTAAAGGAACATGGAAAGGCTATAACCAATCTTTTAAAACAACCAAAGACTAAAAAGTCGAAGCCACACACAGTTGGTTTGAACAACACAAGGATACATCAGATTAAGCGAGTGTTTGGATCGACTTTCTAAGTGTTTATAACTACAAAAAAAAGTTTATAAATACTTGGAAAGTCAATCCAAATGTGCCCTAATTTGTTTTTTTCCTTTAGAAAAAAACTAGATTTAAATTCAAATTCAAATTTATTTCAAATTTCTTGGTTTTTTTTTTGTGCTGATAAAGTTATTTCAAATTTGCATATCATGTTAATCTTTTATTTGTTGTTTTTTTTTTGTAGATGAGAATCAAAAAACAAAAGCGGCAACGGAGAGCTGTGAGATTCTACACTACATGCTGTGGATTCAGGCCACCTTTTAAAATCTTTTGCGATGGAACTTTTGTGAACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGAAGCTGTTGCTAAAACCGTTGGTGATAGAGTAAAGCTTTTCACCACCAGGTTTGTTCTTTTTATTGACTGAATCATAAACATTTGACTTGTTATTTTTATTATCTCATAGTTTTGATTTGCAGATGTGTACTCTTAGAGTTGAAGGCTCTTGGCCAATCCTACTCGGGAGCTTTTGAGGCAGCTAGTCAGCTGTTCACTGCAAGGTCTACCACAGGCTTTTTTTTCATCCTTGAATTTGAATAATTTCGCTTCATGGTGACTAGTATCTTAAGTTTGTCACATTCTTATGGTATTAGCATTTATTGATATGAGGAAGTTGAATTATTTGCTTATTCAACCTTTTTTCTGATTTGAAGTTACACTATGGTTTTAGATGCGACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATACTTGATGTGATCGGTGAATCAAATCCTGAGCATTTTTTTGTTGCCACTCAAGATACTAATCTTAGGAAGCAACTTCAACAGGTTTGTGTATTTCATGGATTGATACACGCAAATATTAGTTTTCCATTACACTTGAACACTTTTTGTTTGTTTCAAATTCGATTGTTTCACTTTGCATCTTATGATCAATTCTGACCTAGGTTATGAAATGTTTCTAATTTATGTTTTCTTCTTCTTATTATTATATGCAACCTTTCTGTTGATAAACAGTTCATAATCTAGAATGGAAAAGTTCTGTGGTCTGCAGTTTTGTTTTTCTTGTTCATTTTCTGGGGTGTTTGGCTCAAGAGGAGGAATAGAATCTTTAGTGCGGTGATGCCGTGTGATGAGGTTTAGAAGTTGGTGCAGTTAAATGTCTCCTTTTAGGCACTGATTGCTAGGCCTTTTTGTAATTGTGATATTGGTTTGGACTTCCTTGTTGTTTCTGTTTTGGGACCTTTTTATTAAATGAAAGCTCCGTTTTCTTACCTAAAAAATATATGTTTTCTTATTATATGCCAGGTTGGTTTTGCTTTTCTAACATATGCAGTTTATTTTAAATTCTCTCAAGTTCAAATTATGTAAATCCAAATTGGTAATTTGTGTTATTGTTGGCCATCGTTTTTTTTTGTTATATGAATTTATGAAGTGTTGAAATCTTCAACTTGCTGCCATGTCTACCTGTAATTTCTTTTATTTATATGTTTATATGTTACCAGATACCTGGAGTCCCACTCATATTTGGTCTGAGAAATGCACTTTTCATGGAGCAACCCTCTGATGTGCAACGGCAGTTTGTCAAGTCTTTAGAAGAAAAAAGAATGCACGTGTCTGAGGTGGAACGTGATTTATTGAAGAAAAAAACGAAGTATGTAGTGGAAGCTGAGAAAACTAATGAAGATGAAGATTTGGAAGATCAAAATTTAGACACACTGGTTTTGAAAAAGAAAAAGAAGAACATTCCAAGTAATTTGAAAGACCGACCTCAATTTAAAAGAAACAAAGCAAAGGTATTAACTCCACAATTACATTCTCTCTTTATTATAATCTTGATTTTGTGCTTTTATTTGCATTATTGATTGACTAACTTTTTTTTACTAACTTTGGTCTTGATATTTTGGTCACATCTTTTGCTTTCCATTTTGAAAACCATGGAAAATAGTAATAATAATGATTAGGTGTTGTTTAGGCTAGTGTGCCTAGGACTCTAGTTTGATAACAAAAGGCTTTGCACCCAAAGAAAGCTTTTCTTTGTTGGTGTGGTGTCTTTTTTTGTAGGTAGTTCTTGGACTACCATTTGGTTGAGATTGTTTCTTTGTTTGTCTTTGCTTTTCGTTTACTTTCTTTATGTTTAAAATTACTTCGAAGTACTTTCTTTATGTTCAAAATTACTTCGAAACATTCTGTTAGTAATCCACAAAATTTTGATTGCATGAAAATTAGGTTTGAAAGTGTAAAATCAAACATTGAGTGATTAAATGTATGATCAAGAGTGACTTGTAATATGACAAAGGTAATTTTAACGATTTATGAAATCACTCTAGTGTGCCCTAATAAAATGTACAATGAGACAATGCTATTTATTGTTTATGGTGCTAGTCTGTTCTTGGTTTCAATTGTTACATGAATATCACGCAAACTAGTTTTCTTGATTTATGAATGCACTTTCATTTTGTAGGGTCCAAACCCTCTTTCATGTTTGAAGAAAAAGGTTAAACCAAGTCCACATCCAGTTTCAGAGAAGGTAATATTTTCATTTACAGTGCTTCTGAATGTCTAGTAGTATATTCTAAAAAATAAGATGATCAAAGTGACATTTTAGTATGAAATGTTGAAATGAGAATTCTTGGCCGAATATAAGGAAGTCTTAAGAAAACATGTTTAAGAAGTGAGTAATAACACAAGAAAGCTATAGAAGAAGTGTTTGTAAGCTTATTATTAAAAACCATAAAACATAAAATAAAATGGTTATTATTAAACAAGGCTAATAGTCTAGTAATTTTTCTTTGAGAGTGACTTCTTAGAAAGTTCGTAAAGATTCATTTTCCCCGATGATATACTCCCGGGAATGCAAATTTTTTTGTTATTTTTTTCTTTAGTTACATCTTGCTACTCTAAACACATTACAATTATCATCCTATATTTATATGAACATATACATGTGTTTGTGGTTGGGATTGAATTACTTTCTTTTTTGTGCATCAGAAGAAGGATGATGATAGTGTGGCTCAAAAGCGTACACGGAAACGAAAGCGATCGCGAAAGGCTAAAGCACCTACAGAGACGGTCATGTCATAGTTAGGCTCTTTTTTTGTTGTGCCTTGGGAAATTTTGTTGTTGTGAGGCAAATGGTAGAATGATTTGGTCTTAACTTCTTAGCTGAGGATTTGAAAGTACTTGAGCTACCCTTGATCTCAAGTGATCAAAGTTTTGAAGATCTATTTCTTCGAACTCAAAAAATACTTAGTCAACGTGTTTAATCAATTATGCAGAAGCAAAGGAGATAATTTCGCCGGTTAGTTTATATGTTTCTTCCATTTGTGCAATTTATTAAGTTAAATGGTGAGGCGATTGTCCAATTTATTGTGTGTTTTCAAAGGTATTTACTGTTAAAGGAACACTTTCTTTCTACAATTGAGATAACTGTTATTGAAGAGCTTTCATCTTCAAATAGAATACAAGATATAATTATAT

mRNA sequence

ATGAGAATCAAAAAACAAAAGCGGCAACGGAGAGCTGTGAGATTCTACACTACATGCTGTGGATTCAGGCCACCTTTTAAAATCTTTTGCGATGGAACTTTTGTGAACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGAAGCTGTTGCTAAAACCGTTGGTGATAGAGTAAAGCTTTTCACCACCAGATGTGTACTCTTAGAGTTGAAGGCTCTTGGCCAATCCTACTCGGGAGCTTTTGAGGCAGCTAGTCAGCTGTTCACTGCAAGATGCGACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATACTTGATGTGATCGGTGAATCAAATCCTGAGCATTTTTTTGTTGCCACTCAAGATACTAATCTTAGGAAGCAACTTCAACAGATACCTGGAGTCCCACTCATATTTGGTCTGAGAAATGCACTTTTCATGGAGCAACCCTCTGATGTGCAACGGCAGTTTGTCAAGTCTTTAGAAGAAAAAAGAATGCACGTGTCTGAGGTGGAACGTGATTTATTGAAGAAAAAAACGAAGTATGTAGTGGAAGCTGAGAAAACTAATGAAGATGAAGATTTGGAAGATCAAAATTTAGACACACTGGTTTTGAAAAAGAAAAAGAAGAACATTCCAAGTAATTTGAAAGACCGACCTCAATTTAAAAGAAACAAAGCAAAGGGTCCAAACCCTCTTTCATGTTTGAAGAAAAAGGTTAAACCAAGTCCACATCCAGTTTCAGAGAAGAAGAAGGATGATGATAGTGTGGCTCAAAAGCGTACACGGAAACGAAAGCGATCGCGAAAGGCTAAAGCACCTACAGAGACGGTCATGTCATAG

Coding sequence (CDS)

ATGAGAATCAAAAAACAAAAGCGGCAACGGAGAGCTGTGAGATTCTACACTACATGCTGTGGATTCAGGCCACCTTTTAAAATCTTTTGCGATGGAACTTTTGTGAACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGAAGCTGTTGCTAAAACCGTTGGTGATAGAGTAAAGCTTTTCACCACCAGATGTGTACTCTTAGAGTTGAAGGCTCTTGGCCAATCCTACTCGGGAGCTTTTGAGGCAGCTAGTCAGCTGTTCACTGCAAGATGCGACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATACTTGATGTGATCGGTGAATCAAATCCTGAGCATTTTTTTGTTGCCACTCAAGATACTAATCTTAGGAAGCAACTTCAACAGATACCTGGAGTCCCACTCATATTTGGTCTGAGAAATGCACTTTTCATGGAGCAACCCTCTGATGTGCAACGGCAGTTTGTCAAGTCTTTAGAAGAAAAAAGAATGCACGTGTCTGAGGTGGAACGTGATTTATTGAAGAAAAAAACGAAGTATGTAGTGGAAGCTGAGAAAACTAATGAAGATGAAGATTTGGAAGATCAAAATTTAGACACACTGGTTTTGAAAAAGAAAAAGAAGAACATTCCAAGTAATTTGAAAGACCGACCTCAATTTAAAAGAAACAAAGCAAAGGGTCCAAACCCTCTTTCATGTTTGAAGAAAAAGGTTAAACCAAGTCCACATCCAGTTTCAGAGAAGAAGAAGGATGATGATAGTGTGGCTCAAAAGCGTACACGGAAACGAAAGCGATCGCGAAAGGCTAAAGCACCTACAGAGACGGTCATGTCATAG

Protein sequence

MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLSCLKKKVKPSPHPVSEKKKDDDSVAQKRTRKRKRSRKAKAPTETVMS

Homology

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BLAST of CsaV3_5G024970 vs. NCBI nr
Match: XP_004143766.1 (PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655273.1 PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655274.1 PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655275.1 PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 460.7 bits (1184), Expect = 3.6e-126
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180

Query: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 235
           KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS
Sbjct: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 234

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BLAST of CsaV3_5G024970 vs. NCBI nr
Match: XP_011655276.1 (PREDICTED: rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 460.7 bits (1184), Expect = 3.6e-126
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180

Query: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 235
           KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS
Sbjct: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 234

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BLAST of CsaV3_5G024970 vs. NCBI nr
Match: XP_008465424.1 (PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465433.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465440.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465448.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465455.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465460.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo])

HSP 1 Score: 436.4 bits (1121), Expect = 7.3e-119
Identity = 224/234 (95.73%), Postives = 226/234 (96.58%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCVLLELKALGQSY+GAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYAGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QDTNLRKQLQQIPGVPLIFGLRN LFMEQPSDVQRQFVKSLEEKRMH+SE ERDLLKKK 
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEKRMHMSEAERDLLKKKM 180

Query: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 235
           KYVVEAEKTNEDEDL DQNLD  VL KKKKNI SNLKDRPQFKRNKAKGPNPLS
Sbjct: 181 KYVVEAEKTNEDEDLGDQNLDAQVL-KKKKNILSNLKDRPQFKRNKAKGPNPLS 233

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BLAST of CsaV3_5G024970 vs. NCBI nr
Match: KGN51136.1 (hypothetical protein Csa_5G466330 [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 8.3e-99
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 44  MPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEAC 103
           MPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEAC
Sbjct: 1   MPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEAC 60

Query: 104 ILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEE 163
           ILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEE
Sbjct: 61  ILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEE 120

Query: 164 KRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFK 223
           KRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFK
Sbjct: 121 KRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFK 180

Query: 224 RNKAKGPNPLS 235
           RNKAKGPNPLS
Sbjct: 181 RNKAKGPNPLS 191

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BLAST of CsaV3_5G024970 vs. NCBI nr
Match: XP_022923059.1 (rRNA-processing protein UTP23 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 323.6 bits (828), Expect = 6.9e-85
Identity = 172/237 (72.57%), Postives = 196/237 (82.70%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MR KKQKR R+AVRFYTTC GFR PFK+ CDGTFV+HLLSNQI+PAD A+AK +G RVK+
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCVLLELKALG SYS AFEAAS L TARCDHE RK A  CI++VIG+SN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QDT+L+KQLQ+IPGVPLIFGLRNALFMEQP+ ++RQFVKS EEKR H+SEVE +LL+K T
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 K-YVVEAEKTNEDEDLEDQNLDTLVL--KKKKKNIPSNLKDRPQFKRNKAKGPNPLS 235
           K    E E TNED DL  +N +  VL  KKKK+   ++LKDRPQFKR K KGPNPLS
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTKGPNPLS 237

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BLAST of CsaV3_5G024970 vs. TAIR10
Match: AT2G34570.1 (PIN domain-like family protein)

HSP 1 Score: 228.0 bits (580), Expect = 7.1e-60
Identity = 114/230 (49.57%), Postives = 160/230 (69.57%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MR+K+QK+ RR VRF+T C GFR P+K+ CDGTFV+HL++N+I PAD AV++ +G  VKL
Sbjct: 1   MRVKRQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCV+ EL+ LG+ ++ + EAA  L TA C+HE+ K+A+ C+ +VIG  N EHFF+ T
Sbjct: 61  FTTRCVIAELEKLGKDFAESLEAAQTLNTATCEHEEAKTADECLSEVIGVQNTEHFFLGT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QD   R++LQQ   VPL+FGLRN L ++QPSD QRQ  K  E KR+ +++ E+ LL K+T
Sbjct: 121 QDAEFRRKLQQESIVPLVFGLRNILLIDQPSDFQRQSAKDSENKRLTMTDTEKKLLVKRT 180

Query: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGP 231
             ++ + +       E+  +  +V  K    +    KDRPQFKRN+AKGP
Sbjct: 181 AKIIASNRKEATIANEEWGMPRVVSTKNGLGV----KDRPQFKRNRAKGP 226

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BLAST of CsaV3_5G024970 vs. TAIR10
Match: AT2G46230.1 (PIN domain-like family protein)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 24  PPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEA 83
           PP+++  D  F+N  + N+I   ++ +   +        T CV+ EL+ LGQ Y  A   
Sbjct: 61  PPYRVLVDTNFINFSIQNKI-DLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALRI 120

Query: 84  ASQLFTAR--CDHEKRKSAEACILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIF 140
           A      R  C H K   A+ C++D +  +  + F VAT D +L++++++IPGVP+++
Sbjct: 121 AKDPHFERLPCIH-KGTYADDCLVDRV--TQHKCFIVATCDRDLKRRIRKIPGVPIMY 174

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BLAST of CsaV3_5G024970 vs. Swiss-Prot
Match: sp|Q9CX11|UTP23_MOUSE (rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 65/179 (36.31%), Postives = 104/179 (58.10%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           M+I +QK  ++ + F+    G R P++I  DGTF    L  +I   D+     +G+  +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLRDQLPRYLMGE-TQL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRK-SAEACILDVIGESNPEHFFVA 120
            TTRCVL EL+ LG+   GA   A +     C H K   S   C+L ++ E NP H+FVA
Sbjct: 61  CTTRCVLKELETLGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVA 120

Query: 121 TQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKK 179
           TQD NL  ++++ PG+PL+F ++N + +++PS     FVK++E  ++ VS  E+  +K+
Sbjct: 121 TQDQNLSVKVKRTPGIPLMFIIQNTIVLDKPSPRTVAFVKAVEAGQL-VSVHEKQSIKQ 177

[Close]

BLAST of CsaV3_5G024970 vs. Swiss-Prot
Match: sp|Q9BRU9|UTP23_HUMAN (rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24
Identity = 65/178 (36.52%), Postives = 104/178 (58.43%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           M+I +QK  ++ + F+    G R P++I  DGTF    L  +I   ++     +G+  +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGE-TQL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRK-SAEACILDVIGESNPEHFFVA 120
            TTRCVL EL+ LG+   GA   A +     C H K   S   C+L ++ E NP H+FVA
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVA 120

Query: 121 TQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLK 178
           TQD NL  ++++ PGVPL+F ++N + +++PS     FVK++E  ++ VS  E++ +K
Sbjct: 121 TQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQL-VSVHEKESIK 176

[Close]

BLAST of CsaV3_5G024970 vs. Swiss-Prot
Match: sp|Q08DU1|UTP23_BOVIN (rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22
Identity = 61/179 (34.08%), Postives = 103/179 (57.54%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           M+I +QK  ++ + F+    G R P++I  DGTF    L  +I    E + + +    +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQ-LREQLPRYLMAETQL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRK-SAEACILDVIGESNPEHFFVA 120
            TTRCVL EL+ LG+   GA   A +     C H K   S   C+L ++ + NP H+F+A
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLA 120

Query: 121 TQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKK 179
           TQD NL  ++++ PG+PL+F ++N + +++PS     FVK++E  ++ VS  E+  +++
Sbjct: 121 TQDQNLSMKVKKKPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESGQL-VSVHEKQSIRQ 177

[Close]

BLAST of CsaV3_5G024970 vs. Swiss-Prot
Match: sp|O74862|UTP23_SCHPO (rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp23 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-16
Identity = 71/241 (29.46%), Postives = 106/241 (43.98%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MR K+ K  R+ +  Y    GFR P+++  D  F+   LS Q +    A+A+TV   +K 
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADFLKD-LSQQKIDIQAALARTVQGAIKP 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDH-EKRKSAEACILDV--IGESNPEHFF 120
             T+C + +L +           A      RC H ++  S   CI  V  I   N   + 
Sbjct: 61  MITQCCIRQLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYV 120

Query: 121 VATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLK 180
           VATQD  LR+ L+ +PGVPLI+  R+ + +E  S        + E  +M +S+ E+ LL 
Sbjct: 121 VATQDPELRQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEEKLLLS 180

Query: 181 KK----TKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPL 235
            K     +  ++ + T E  DL           KK+K                 KGPNPL
Sbjct: 181 GKKRSANELAIDDQDTKESTDLAGTEDSAPKANKKRKG---------------PKGPNPL 225

[Close]

BLAST of CsaV3_5G024970 vs. Swiss-Prot
Match: sp|Q12339|UTP23_YEAST (rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP23 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-12
Identity = 52/171 (30.41%), Postives = 83/171 (48.54%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MR K+ K  R+ +  Y+    FR P+++  D   V    +N        + +T+   VK+
Sbjct: 1   MRQKRAKSYRKQLLVYSHTFKFREPYQVLVDNQLVLE-CNNSNFNLPSGLKRTLQADVKV 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKR--KSAEACILDVIGES--NPEHF 120
             T+C +  L        GA   A Q    RC+H  +  KS   CI  V+  S  N   +
Sbjct: 61  MITQCCIQALYETRN--DGAINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKHRY 120

Query: 121 FVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMH 168
            VA+QD +LR++L+ +PGVPLI   R+ + ME  S    +  K  EE++++
Sbjct: 121 VVASQDIDLRRKLRTVPGVPLIHLTRSVMVMEPLSTASAKASKITEEQKLY 168

[Close]

BLAST of CsaV3_5G024970 vs. TrEMBL
Match: tr|A0A1S3CNY6|A0A1S3CNY6_CUCME (rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 4.8e-119
Identity = 224/234 (95.73%), Postives = 226/234 (96.58%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCVLLELKALGQSY+GAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYAGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QDTNLRKQLQQIPGVPLIFGLRN LFMEQPSDVQRQFVKSLEEKRMH+SE ERDLLKKK 
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEKRMHMSEAERDLLKKKM 180

Query: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 235
           KYVVEAEKTNEDEDL DQNLD  VL KKKKNI SNLKDRPQFKRNKAKGPNPLS
Sbjct: 181 KYVVEAEKTNEDEDLGDQNLDAQVL-KKKKNILSNLKDRPQFKRNKAKGPNPLS 233

[Close]

BLAST of CsaV3_5G024970 vs. TrEMBL
Match: tr|A0A0A0KTT8|A0A0A0KTT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G466330 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 5.5e-99
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 44  MPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEAC 103
           MPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEAC
Sbjct: 1   MPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEAC 60

Query: 104 ILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEE 163
           ILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEE
Sbjct: 61  ILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEE 120

Query: 164 KRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFK 223
           KRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFK
Sbjct: 121 KRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFK 180

Query: 224 RNKAKGPNPLS 235
           RNKAKGPNPLS
Sbjct: 181 RNKAKGPNPLS 191

[Close]

BLAST of CsaV3_5G024970 vs. TrEMBL
Match: tr|B9SW27|B9SW27_RICCO (rRNA-processing protein UTP23, putative OS=Ricinus communis OX=3988 GN=RCOM_0657470 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 145/235 (61.70%), Postives = 181/235 (77.02%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MR++KQKR RRAVRFY TC GFR P+KI CDGTFV+HL+ N+I PADEA+A  +G  VKL
Sbjct: 1   MRVRKQKRHRRAVRFYVTCYGFRQPYKILCDGTFVHHLIVNRIAPADEALANILGGPVKL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCV  ELK LG+SYS + +AA  L TARCDHEK KSAEACIL+VIG++NPEHFFVAT
Sbjct: 61  FTTRCVHAELKRLGKSYSESLQAAHLLMTARCDHEKVKSAEACILEVIGQNNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QD +LRK+ +++P VPLIFGLRN+L +E PS  Q  FVK+ EE+R+H +E+E+ +LK  T
Sbjct: 121 QDFDLRKKFREVPAVPLIFGLRNSLHLEPPSAFQHAFVKASEEERLHATELEQKMLKTTT 180

Query: 181 KYVVEAEKTNEDEDLEDQNLDTL-VLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 235
           K ++  E   E E  +DQNL+   V KK      +++KDRPQFKR +AKGPNPLS
Sbjct: 181 KSILGHE--GEIEGPKDQNLEMQPVEKKHSARNKTDVKDRPQFKRKRAKGPNPLS 233

[Close]

BLAST of CsaV3_5G024970 vs. TrEMBL
Match: tr|A0A2G9GN68|A0A2G9GN68_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20690 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 144/237 (60.76%), Postives = 178/237 (75.11%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MR+KKQKR RRAVRFYT C GFR PFK+ CDGTFV+HL++N+I PAD A+A T+G  VK+
Sbjct: 1   MRVKKQKRHRRAVRFYTACFGFREPFKVLCDGTFVHHLIANRITPADTALANTLGAAVKI 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCVL EL++LG SYS +  AA  L  ARCDHE RKSA ACI +VIGE+NPEHFFVAT
Sbjct: 61  FTTRCVLAELRSLGDSYSESLNAARCLLAARCDHENRKSAVACITEVIGENNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLK-KK 180
           QD  LRK+ Q+IPGVP+I+GLRNALF+E+PS  Q +F K+ EE+R+H++E+E  +LK KK
Sbjct: 121 QDAELRKKFQEIPGVPVIYGLRNALFLERPSTFQHEFAKNSEEQRLHMTELEYKMLKAKK 180

Query: 181 TKYVVEAEKTNED--EDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLS 235
            +   + E+ + D  ED ED  L    LK   K    + KD+ QFKR KAKGPNPLS
Sbjct: 181 KRKATDEERYSSDANEDNEDHILKRQDLKTNVKRNRIDTKDKVQFKRKKAKGPNPLS 237

[Close]

BLAST of CsaV3_5G024970 vs. TrEMBL
Match: tr|A0A2K2AX80|A0A2K2AX80_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G197200v3 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 137/235 (58.30%), Postives = 181/235 (77.02%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60
           MR+KKQKR RRAVRFYT C GFR P+K+ CDGTF++HL+ N I PAD A++  +G  VKL
Sbjct: 1   MRVKKQKRHRRAVRFYTACFGFRQPYKVLCDGTFIHHLIVNNIAPADTAISNILGGSVKL 60

Query: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120
           FTTRCVL ELK LG+SY+ + +AA+ L  ARCDHE+ K+AE CI+++IGE+NP+HF+V T
Sbjct: 61  FTTRCVLAELKRLGKSYTESLQAANTLMIARCDHEQIKNAEGCIVEIIGENNPDHFYVGT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180
           QDT++RK+ Q++PGVPLIFGLRNALF++ PS  QRQF K+ EE+R H++E E  LLKK+T
Sbjct: 121 QDTDMRKKFQEVPGVPLIFGLRNALFLQPPSAFQRQFAKNSEEERSHMTEKEVALLKKRT 180

Query: 181 KYVVE----AEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPN 232
           K +VE     + ++E+   ED+NL+ +  +K        +KDRPQFKRNKAKGPN
Sbjct: 181 KDLVENWEIGDSSDENGGPEDENLE-MQPQKYSSRKGMKVKDRPQFKRNKAKGPN 234

The following BLAST results are available for this feature:

BLAST of CsaV3_5G024970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143766.1	3.6e-126	100.00	PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >X...	[more]
XP_011655276.1	3.6e-126	100.00	PREDICTED: rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus]	[more]
XP_008465424.1	7.3e-119	95.73	PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465433.1 ...	[more]
KGN51136.1	8.3e-99	100.00	hypothetical protein Csa_5G466330 [Cucumis sativus]	[more]
XP_022923059.1	6.9e-85	72.57	rRNA-processing protein UTP23 homolog isoform X2 [Cucurbita moschata]	[more]

BLAST of CsaV3_5G024970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34570.1	7.1e-60	49.57	PIN domain-like family protein	[more]
AT2G46230.1	2.0e-09	30.51	PIN domain-like family protein	[more]

BLAST of CsaV3_5G024970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CX11\|UTP23_MOUSE	1.6e-24	36.31	rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=...	[more]
sp\|Q9BRU9\|UTP23_HUMAN	2.1e-24	36.52	rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2	[more]
sp\|Q08DU1\|UTP23_BOVIN	1.9e-22	34.08	rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1	[more]
sp\|O74862\|UTP23_SCHPO	4.6e-16	29.46	rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
sp\|Q12339\|UTP23_YEAST	1.8e-12	30.41	rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]

BLAST of CsaV3_5G024970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CNY6\|A0A1S3CNY6_CUCME	4.8e-119	95.73	rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE...	[more]
tr\|A0A0A0KTT8\|A0A0A0KTT8_CUCSA	5.5e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G466330 PE=4 SV=1	[more]
tr\|B9SW27\|B9SW27_RICCO	2.9e-71	61.70	rRNA-processing protein UTP23, putative OS=Ricinus communis OX=3988 GN=RCOM_0657...	[more]
tr\|A0A2G9GN68\|A0A2G9GN68_9LAMI	3.7e-71	60.76	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20690 P...	[more]
tr\|A0A2K2AX80\|A0A2K2AX80_POPTR	3.2e-70	58.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G197200v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0032040	small-subunit processome

Vocabulary: **INTERPRO**
Term	Definition
IPR029060	PIN-like_dom_sf
IPR006984	Fcf1/Utp23

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0070181	small ribosomal subunit rRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G024970.1	CsaV3_5G024970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.1010		coord: 1..156 e-value: 1.0E-48 score: 167.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..261
None	No IPR available	PANTHER	PTHR12416:SF3	RRNA-PROCESSING PROTEIN UTP23 HOMOLOG	coord: 1..270
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..270
None	No IPR available	CDD	cd09866	PIN_Fcf1-Utp23-H	coord: 2..148 e-value: 2.58666E-66 score: 205.117
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 53..149 e-value: 1.4E-26 score: 92.6
IPR029060	PIN-like domain superfamily	SUPERFAMILY	SSF88723	PIN domain-like	coord: 24..150

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G024970	CSPI05G15940	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G024970	Cucsa.033650	Cucumber (Gy14) v1	cgycucB008
CsaV3_5G024970	CmaCh04G022230	Cucurbita maxima (Rimu)	cmacucB0865
CsaV3_5G024970	CmoCh04G023250	Cucurbita moschata (Rifu)	cmocucB0852
CsaV3_5G024970	Cp4.1LG01g19360	Cucurbita pepo (Zucchini)	cpecucB0523
CsaV3_5G024970	CsGy5G015670	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G024970	Carg17755	Silver-seed gourd	carcucB0514
CsaV3_5G024970	MELO3C005096	Melon (DHL92) v3.5.1	cucmeB362
CsaV3_5G024970	Lsi09G008320	Bottle gourd (USVL1VR-Ls)	cuclsiB347
CsaV3_5G024970	MELO3C005096.2	Melon (DHL92) v3.6.1	cucmedB354
CsaV3_5G024970	Bhi12G000941	Wax gourd	cucwgoB465

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G024970	Silver-seed gourd	carcucB0867
CsaV3_5G024970	Cucurbita maxima (Rimu)	cmacucB0357
CsaV3_5G024970	Cucurbita moschata (Rifu)	cmocucB0352
CsaV3_5G024970	Cucurbita pepo (Zucchini)	cpecucB0214
CsaV3_5G024970	Watermelon (Charleston Gray)	cucwcgB387
CsaV3_5G024970	Watermelon (97103) v1	cucwmB435
CsaV3_5G024970	Watermelon (97103) v2	cucwmbB353