Carg17755 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17755
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	rRNA-processing protein UTP23 homolog
Location	Cucurbita_argyrosperma_scaffold_082 : 398390 .. 403110 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCCTACTGTGGGTTGGGCTTAGGATGAACAAGCAACCCAAGGTTTAAGTTTCGTCCATCTTTCTGCTCACTCTCTGATTCATGTTTCTCTCCGCCGCCGCCGCTCGCCGGTAACGCCTCCACTGCCAGTTTGCTTTCTTCTCTTCTTCTTTGTCTCCTGCAACCGAAGGTTTCCCGGACTAGGCAATACCACGAAAACAGTTGCTGCAATCGAGAATCGCAAGTACCAGAATAAGCTCTCCTTGTTCTCAGGGTATTTTTCCGTTTAATCTCTTCCTAATCTATAGTTTCTTATTTCAAGCATGATTTGAGTTTAATCACGGGAAGATATTTGTTATACCTTAAGATTACTGATGTTGTAATGCAGTGATTTATTCTGCCATGTCTTCTTTCATATTGGAACTTATATTTCAAATTTTTTTGGGTTATCTGTTTAGATGAGATTCAAAAAGCAAAAGCGTCATCGGAAAGCTGTGAGATTTTACACTACATGTTTTGGATTCAGGGAGCCGTTTAAAGTCTTGTGTGATGGAACTTTTGTCCACCATCTTCTCTCCAATCAAATATTGCCGGCCGATGCTGCCCTTGCTAAAGTTCTTGGTGGCCGAGTCAAGGTTTTCACCACTAGGTGTGTTTTCTTTATTGAGTCAATCGTAGTATGTTTCTTCCTACGCCCATTTGACCTGTTATTTTTCATTATCTCATTGGTTTGCAGATGTGTGCTCTTAGAATTGAAGGCCCTTGGTCCATCCTACTCTAAAGCTTTTGAGGCAGCTAGTAACCTGTCTACTGCAAGGTCAGACACAGACTTATCTTATTATTTCCATTCATAATTTGAATAGCTTCTTTTAATGATCTTCGATTCTTGACTTTGTCATGTTCTTGTGGTATTACCGTTGGTTGCTATGAGGTAGTGTAATTGTATTTTCTTGTTCAATTCCATATTTTCTGAGTTAAAATTATATTTTTGCGTCAGATGTGACCATGAGATAAGAAAGCATGCTGTGACATGTATCATGGAGGTGATTGGTAAATCAAATGCCGAGCATTTTTTTGTTGCCACCCAAGATACTGATCTTAAGAAGCAGCTTCAAGAGGTTAGTTTATTTAATGAATTGATCCCAAAATTATTAATTTTCCATTGCATCTATACTCTTTTCGTTTGCTTCAAGAGCTTATTATCTTTTTCCAACTTCCTAGTTATGAAATGTTTCTAGTTTCTGCCTTTTTAACATATGCACTTGATTAGAAGTTCTCTTGGAAGTCTAACTATGTATGTTTGGACTGGTATTTTTGTTATTGTTGGCCATTATTTTTTATTATGTTTAGATTGACTTATCATGCCTGCTTGTATGGATGGTTTTCTGAAGGGCTGAAATCTTAAACTTGCTGGCTTAATTCTTTTGTATATGTTTGCAGATACCTGGGGTCCCACTTATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCAACTGCCTTGGAACGCCAATTTGTTAAATCTTCGGAAGAAAAAAGATCGCATATTTCTGAGGTCGAACTTAATTTGTTACGGAAAGTAACGAAGGATGACGAAGAGGAAACTGAGAAAACTAACGAAGATGGAGATCTGGTAGACAAAAATTCAGAGATGCAGGTTTTGGAAAAGAAAAAGAAAAAGAAAGGAAATTTAAATGATTTGAAGGATAGACCTCAATTTAAGAGAAAGAAAACAAAGGTATTTTTCCATGATAACATTTTCTCTTTATTGTAGACTTGGTTTTGTGCTTCATTTTTGCATTATTACTAACTTGGAACTTTGATGTTTTGGTCATATCTTGAGCTGTCTATATTAAAATGCCGTGGAAGGAATAGTCTGTAGTTCTTATATTATTTTTTAGGGGAGTGCATTGGACCCTAGTTTCTTTTCTAAAGGAATTGGACAGAAGAATTTTCGTTTGACTATGAATGCATGTTTTGAGGATGAGTTTACTGATTTTCATTCTCTTTTAGGGACTTTTCTTCTTATTGGCTCTTGGTGGGTTCATAGTTATAAATAATTTTTTGTAATGACCTAATTGCGTTTATATTCTGCAATTGATTGATTTATTATTATTATTATTATTATTATTTTGCAATTGCGTCCTTTGGGAGGGTATTCTCTCTTCACCTGCCCCTAAGTTGTTGTATTTCCTCTGATTTTTCCCAATACATTTTATGTTGATTGTATATAAAAAGCAACTCTTCTGACTCTTAATTCATTCCAACACTTGCAGATGATAAGAAAGTAATTTAAGATACAAAGCCAAGATTTTTTTTTTCATCACATAAATGAAAACTTATGTTTTCCTTCTTGACATGTACATTTTCATTTGCTCCTTCCTATTTTCAATTGTATGCATGCTCTAGGATTTTCTAGTCACTTGACTAGAGTTATCAGATAAGAGATAGGCTGGTTTTATGTGAAATTCCTTTTAGCTATTTTGATTGCAATGTTCGATGCTGAAGCATTTCATAGTGTTGTTTGTTATTTAATAAATGTGCAATGAGGGGGTGTACACGGGTTGAGTTGGGGAATCTTTTTGGACCAACCTAAAATTTTGGGTTGATTGGGTTGGTGACTGAGCAATCCGAATAATCTTAAAAGTAGGATAAGGTTGTGACGGGTTGTAACCCTATTTTTGGGTTTTCAAACAAAAAAAATGTCCACCTACCAATTGACTCGAAGTTTTGGTTTTCTAAAAACTCAACCCAACCCAAATCTGAAAAAAAATCTAATCTAACCCAGTTTTAAGGTGTGGGTTGGGTAGTCTGGGTTGGTTGGGTTCTTGGATCATATGAACACCCCTACCATGCTATTTATTATTTATATTTATGCTGTCATTCTTTTTTTTTTTTTTTTTCTTTTTCTACATAACACTATTCAGGGTACCATTCTGTTGCTGCTCTTAGTTATTATATGATGATTATATTGATTGGTCAGACCAAGTTTCTTAATCACTTTCATTTTCTATCTCTCCACAAAACATTGCAGGGTCCAAACCCTCTTTCGTGTCTGAAGAAGAAGAAAAAGGTCGATCCAAACCAACATCCAGTTTCAGAGAAGGTAGAGTTTGCAGCTTCTATAATTTCAAATTATTGTTGCATGATTGCATTGCACTTCATTCGGTTTTTTGTACTATTATTATTTGATAGGATTCAATAATTCATTGAATGAAATGAAAACCAATGGAAAACAAATGGGAGATAAGATGCTGTTCGATCGGGCGAAGGAAGCTAAGAAGTGGGAACATAAGTCGTAACTGAAATTTGTTGAGTTATATTATTTTCTTACTTATGTCGGGCCTTAAACTAGTATAGTATGAATAATACCATTTCTAGTCCTTAAGCTTAGAAAAAAAAACCATTTTTCGATTTAATACCCACCCAATACTTATTAAAAGCAAAAGAAACTCAAGAAATAAAATTCGTCTAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGTAAGAATCAAAATGATTACTTCTTGAAGTTTAGCAACTATAATTTACATTTTGAAGCTTAATGACAAAAAAAAAAAAAAAGGGAAGTTCAAAGGCAAAACGATCCAGTCTCTATGGTTCATTAGAAATTTATATTTTCGTAAAAGTTGAATATTCCAATAATGTTCTTTGAGATTGGTATTTGAGGCTGATATCTTATGCCTAGCATCCTAGAAACTCTTCAAGTATGTTTTTTTTTCCATCATGAGATAGCATGAAAACAAACTGTTTCTTTTTCTTTAATTACATCTTACTTCCTAACCACAATATAATTATCTTATATGCATTTTATTTCAATGTTTTGTCTTAATACCTATTTGTGCTCCTGGATCATGATTGGATTTTCTATCTTATGCTGCAGAAGGCTGATGATAATACTACTAAAAGGACTCGCAAACGAAAACGGGCACGAAAGACCAAAACCACTGCAGAGACGGGAGCACCATAGTTTGTAGTCATCTGATTTGGCTTTGGTAATTTTGGTGCTTTGTGGTAAATGGTAGAATGATTTGGTTTTAACGTTTAGAATGCATCATCCCTAGCAAGAGGGTTAGAAGTCTGAAATTAGATGGGAGTTATGGGTGTTCCCTCACGAAGGTGTAGCTTCCATAGATAAGGAAATTGTATTATGATAATACCCGTTGCCAACCTAAGCTATAGAGATACAATTTTTTATTTTCACATGTGGTTGATACTGGTCAATATTTTTGTGTTCTTGCAAGGGAAATTGATTCTTTGAACCTCAACGAGACCAGGTGAAAGCGAAAATGGATTGTTTCACCTTGTGAGGCGATTTCTACCCTGTTTTTTTTTTTTTTGCTATTTTATTTGAGTAGGGGTGTGTTTAAGCTAGACAGGTTTTAGGGGTTTTTGCTCCTTTGGGTGAAAGATTTAGATTTAGATGTGGTTTTAGTCGGTTGATGAACAAATTTATTTTTCCATGTGTTTTGTTAAAAGAATCGATCGATTAGTTTTTGCTATTGCAGTTGTATATGTTGATTGAAACTCCGGAAATGATCTCGTGTAAAGCAAAGTTTTGTTTGCTTGTAGAGACAATTTCATTGCTGTTTGAAATTTATGAATGAGACGCGTTATTTATGATCTTTACGAATGACCTTTTCAATTTAGCGTTCAGGGAGAGGTATGACTATATAACAATTTAGCGTTCAGGGAGAGGT

mRNA sequence

TGCCCTACTGTGGGTTGGGCTTAGGATGAACAAGCAACCCAAGGTTTAAGTTTCGTCCATCTTTCTGCTCACTCTCTGATTCATGTTTCTCTCCGCCGCCGCCGCTCGCCGGTAACGCCTCCACTGCCAGTTTGCTTTCTTCTCTTCTTCTTTGTCTCCTGCAACCGAAGGTTTCCCGGACTAGGCAATACCACGAAAACAGTTGCTGCAATCGAGAATCGCAAGTACCAGAATAAGCTCTCCTTGTTCTCAGGATGAGATTCAAAAAGCAAAAGCGTCATCGGAAAGCTGTGAGATTTTACACTACATGTTTTGGATTCAGGGAGCCGTTTAAAGTCTTGTGTGATGGAACTTTTGTCCACCATCTTCTCTCCAATCAAATATTGCCGGCCGATGCTGCCCTTGCTAAAGTTCTTGGTGGCCGAGTCAAGGTTTTCACCACTAGATGTGTGCTCTTAGAATTGAAGGCCCTTGGTCCATCCTACTCTAAAGCTTTTGAGGCAGCTAGTAACCTGTCTACTGCAAGATGTGACCATGAGATAAGAAAGCATGCTGTGACATGTATCATGGAGGTGATTGGTAAATCAAATGCCGAGCATTTTTTTGTTGCCACCCAAGATACTGATCTTAAGAAGCAGCTTCAAGAGATACCTGGGGTCCCACTTATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCAACTGCCTTGGAACGCCAATTTGTTAAATCTTCGGAAGAAAAAAGATCGCATATTTCTGAGGTCGAACTTAATTTGTTACGGAAAGTAACGAAGGATGACGAAGAGGAAACTGAGAAAACTAACGAAGATGGAGATCTGGTAGACAAAAATTCAGAGATGCAGGTTTTGGAAAAGAAAAAGAAAAAGAAAGGAAATTTAAATGATTTGAAGGATAGACCTCAATTTAAGAGAAAGAAAACAAAGGGTCCAAACCCTCTTTCGTGTCTGAAGAAGAAGAAAAAGGTCGATCCAAACCAACATCCAGTTTCAGAGAAGAAGGCTGATGATAATACTACTAAAAGGACTCGCAAACGAAAACGGGCACGAAAGACCAAAACCACTGCAGAGACGGGAGCACCATAGTTTGTAGTCATCTGATTTGGCTTTGGTAATTTTGGTGCTTTGTGGTAAATGGTAGAATGATTTGGTTTTAACGTTTAGAATGCATCATCCCTAGCAAGAGGGTTAGAAGTCTGAAATTAGATGGGAGTTATGGGTGTTCCCTCACGAAGGTGTAGCTTCCATAGATAAGGAAATTGTATTATGATAATACCCGTTGCCAACCTAAGCTATAGAGATACAATTTTTTATTTTCACATGTGGTTGATACTGGTCAATATTTTTGTGTTCTTGCAAGGGAAATTGATTCTTTGAACCTCAACGAGACCAGGTGAAAGCGAAAATGGATTGTTTCACCTTGTGAGGCGATTTCTACCCTGTTTTTTTTTTTTTTGCTATTTTATTTGAGTAGGGGTGTGTTTAAGCTAGACAGGTTTTAGGGGTTTTTGCTCCTTTGGGTGAAAGATTTAGATTTAGATGTGGTTTTAGTCGGTTGATGAACAAATTTATTTTTCCATGTGTTTTGTTAAAAGAATCGATCGATTAGTTTTTGCTATTGCAGTTGTATATGTTGATTGAAACTCCGGAAATGATCTCGTGTAAAGCAAAGTTTTGTTTGCTTGTAGAGACAATTTCATTGCTGTTTGAAATTTATGAATGAGACGCGTTATTTATGATCTTTACGAATGACCTTTTCAATTTAGCGTTCAGGGAGAGGTATGACTATATAACAATTTAGCGTTCAGGGAGAGGT

Coding sequence (CDS)

ATGAGATTCAAAAAGCAAAAGCGTCATCGGAAAGCTGTGAGATTTTACACTACATGTTTTGGATTCAGGGAGCCGTTTAAAGTCTTGTGTGATGGAACTTTTGTCCACCATCTTCTCTCCAATCAAATATTGCCGGCCGATGCTGCCCTTGCTAAAGTTCTTGGTGGCCGAGTCAAGGTTTTCACCACTAGATGTGTGCTCTTAGAATTGAAGGCCCTTGGTCCATCCTACTCTAAAGCTTTTGAGGCAGCTAGTAACCTGTCTACTGCAAGATGTGACCATGAGATAAGAAAGCATGCTGTGACATGTATCATGGAGGTGATTGGTAAATCAAATGCCGAGCATTTTTTTGTTGCCACCCAAGATACTGATCTTAAGAAGCAGCTTCAAGAGATACCTGGGGTCCCACTTATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCAACTGCCTTGGAACGCCAATTTGTTAAATCTTCGGAAGAAAAAAGATCGCATATTTCTGAGGTCGAACTTAATTTGTTACGGAAAGTAACGAAGGATGACGAAGAGGAAACTGAGAAAACTAACGAAGATGGAGATCTGGTAGACAAAAATTCAGAGATGCAGGTTTTGGAAAAGAAAAAGAAAAAGAAAGGAAATTTAAATGATTTGAAGGATAGACCTCAATTTAAGAGAAAGAAAACAAAGGGTCCAAACCCTCTTTCGTGTCTGAAGAAGAAGAAAAAGGTCGATCCAAACCAACATCCAGTTTCAGAGAAGAAGGCTGATGATAATACTACTAAAAGGACTCGCAAACGAAAACGGGCACGAAAGACCAAAACCACTGCAGAGACGGGAGCACCATAG

Protein sequence

MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKVFTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKNSEMQVLEKKKKKKGNLNDLKDRPQFKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKTKTTAETGAP

Homology

[Close]

BLAST of Carg17755 vs. NCBI nr
Match: XP_022990879.1 (rRNA-processing protein UTP23 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 481.9 bits (1239), Expect = 1.5e-132
Identity = 267/283 (94.35%), Postives = 268/283 (94.70%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLL+KVT
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 KDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLSCLK 240
           KDDEEETE TNEDGDLV KNSEMQVL           DLKDRPQFKRKKTKGPNPLSCLK
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTKGPNPLSCLK 240

Query: 241 KKKKVDPNQHPVSEKKADDNXXXXXXXXXXXXXXXXXAETGAP 284
           KKKKVDPNQHPVSEKKADDN XXXXXXXXXXXXXXXXAETG P
Sbjct: 241 KKKKVDPNQHPVSEKKADDNTXXXXXXXXXXXXXXXXAETGTP 283

[Close]

BLAST of Carg17755 vs. NCBI nr
Match: XP_022923049.1 (rRNA-processing protein UTP23 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 478.0 bits (1229), Expect = 2.2e-131
Identity = 267/282 (94.68%), Postives = 268/282 (95.04%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLL+KVT
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 KDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLSCLK 240
           KDDEEETE TNEDGDLV KNSEMQVL           DLKDRPQFKRKKTKGPNPLSCLK
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTKGPNPLSCLK 240

Query: 241 KKKKVDPNQHPVSEKKADDNXXXXXXXXXXXXXXXXXAETGA 283
           KKKKVDPNQHPVSEKKADD XXXXXXXXXXXXXXXXXAETGA
Sbjct: 241 KKKKVDPNQHPVSEKKADDXXXXXXXXXXXXXXXXXXAETGA 282

[Close]

BLAST of Carg17755 vs. NCBI nr
Match: XP_022990880.1 (rRNA-processing protein UTP23 homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 475.7 bits (1223), Expect = 1.1e-130
Identity = 264/283 (93.29%), Postives = 265/283 (93.64%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLL+KVT
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 KDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLSCLK 240
           KDDEEETE TNEDGDLV KNSEMQVL           DLKDRPQFKRKKTKGPNPLSCLK
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTKGPNPLSCLK 240

Query: 241 KKKKVDPNQHPVSEKKADDNXXXXXXXXXXXXXXXXXAETGAP 284
           KKKKVDPNQHPVSE KADDN   XXXXXXXXXXXXXXAETG P
Sbjct: 241 KKKKVDPNQHPVSE-KADDNTTKXXXXXXXXXXXXXXAETGTP 282

[Close]

BLAST of Carg17755 vs. NCBI nr
Match: XP_022923059.1 (rRNA-processing protein UTP23 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 474.6 bits (1220), Expect = 2.4e-130
Identity = 265/282 (93.97%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLL+KVT
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 KDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLSCLK 240
           KDDEEETE TNEDGDLV KNSEMQVL           DLKDRPQFKRKKTKGPNPLSCLK
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTKGPNPLSCLK 240

Query: 241 KKKKVDPNQHPVSEKKADDNXXXXXXXXXXXXXXXXXAETGA 283
           KKKKVDPNQHPVSE KADDN  XXXXXXXXXXXXXXXAETGA
Sbjct: 241 KKKKVDPNQHPVSE-KADDNTTXXXXXXXXXXXXXXXAETGA 281

[Close]

BLAST of Carg17755 vs. NCBI nr
Match: XP_023518562.1 (rRNA-processing protein UTP23 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405.2 bits (1040), Expect = 1.8e-109
Identity = 247/283 (87.28%), Postives = 247/283 (87.28%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKV 
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVX 180

Query: 181 KDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLSCLK 240
                                     XXXXXXXXXXX      QFKRKKTKGPNPLSCLK
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFKRKKTKGPNPLSCLK 240

Query: 241 KKKKVDPNQHPVSEKKADDNXXXXXXXXXXXXXXXXXAETGAP 284
           KKKKVDPNQHPVSEKKADD XXXXXXXXXXXXXXXXX  TGAP
Sbjct: 241 KKKKVDPNQHPVSEKKADDXXXXXXXXXXXXXXXXXXXXTGAP 283

[Close]

BLAST of Carg17755 vs. TAIR10
Match: AT2G34570.1 (PIN domain-like family protein)

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-56
Identity = 112/237 (47.26%), Postives = 158/237 (66.67%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR K+QK++R+ VRF+T C+GFR+P+KVLCDGTFVHHL++N+I PAD A++++LGG VK+
Sbjct: 1   MRVKRQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKL 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCV+ EL+ LG  ++++ EAA  L+TA C+HE  K A  C+ EVIG  N EHFF+ T
Sbjct: 61  FTTRCVIAELEKLGKDFAESLEAAQTLNTATCEHEEAKTADECLSEVIGVQNTEHFFLGT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLL---- 180
           QD + +++LQ+   VPL+FGLRN L ++QP+  +RQ  K SE KR  +++ E  LL    
Sbjct: 121 QDAEFRRKLQQESIVPLVFGLRNILLIDQPSDFQRQSAKDSENKRLTMTDTEKKLLVKRT 180

Query: 181 RKVTKDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGP 234
            K+   + +E    NE+  +    S    L            +KDRPQFKR + KGP
Sbjct: 181 AKIIASNRKEATIANEEWGMPRVVSTKNGL-----------GVKDRPQFKRNRAKGP 226

[Close]

BLAST of Carg17755 vs. TAIR10
Match: AT2G46230.1 (PIN domain-like family protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 36/117 (30.77%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 25  PFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKVFTTRCVLLELKALGPSYSKAFEAA 84
           P++VL D  F++  + N+I   +  +   L        T CV+ EL+ LG  Y  A   A
Sbjct: 62  PYRVLVDTNFINFSIQNKI-DLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALRIA 121

Query: 85  SNLSTAR--CDHEIRKHAVTCIMEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIF 140
            +    R  C H+   +A  C+++ + +     F VAT D DLK+++++IPGVP+++
Sbjct: 122 KDPHFERLPCIHK-GTYADDCLVDRVTQHKC--FIVATCDRDLKRRIRKIPGVPIMY 174

[Close]

BLAST of Carg17755 vs. Swiss-Prot
Match: sp|Q9BRU9|UTP23_HUMAN (rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-21
Identity = 59/165 (35.76%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           M+  +QK  +K + F+   FG REP+++L DGTF    L  +I   +  L + L G  ++
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLRE-QLPRYLMGETQL 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVT---CIMEVIGKSNAEHFF 120
            TTRCVL EL+ LG     A   A       C H   K+AV+   C++ ++ + N  H+F
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPH--FKNAVSGSECLLSMVEEGNPHHYF 120

Query: 121 VATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSE 163
           VATQD +L  ++++ PGVPL+F ++N + +++P+     FVK+ E
Sbjct: 121 VATQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVE 162

[Close]

BLAST of Carg17755 vs. Swiss-Prot
Match: sp|Q9CX11|UTP23_MOUSE (rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-21
Identity = 56/163 (34.36%), Postives = 90/163 (55.21%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           M+  +QK  +K + F+   FG REP+++L DGTF    L  +I   D  L + L G  ++
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLRD-QLPRYLMGETQL 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDH-EIRKHAVTCIMEVIGKSNAEHFFVA 120
            TTRCVL EL+ LG     A   A       C H +       C++ ++ + N  H+FVA
Sbjct: 61  CTTRCVLKELETLGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVA 120

Query: 121 TQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSE 163
           TQD +L  +++  PG+PL+F ++N + +++P+     FVK+ E
Sbjct: 121 TQDQNLSVKVKRTPGIPLMFIIQNTIVLDKPSPRTVAFVKAVE 162

[Close]

BLAST of Carg17755 vs. Swiss-Prot
Match: sp|Q08DU1|UTP23_BOVIN (rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.9e-20
Identity = 56/165 (33.94%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           M+  +QK  +K + F+   FG REP+++L DGTF    L  +I   +  L + L    ++
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLRE-QLPRYLMAETQL 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVT---CIMEVIGKSNAEHFF 120
            TTRCVL EL+ LG     A   A       C H   K+AV+   C++ ++   N  H+F
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPH--FKNAVSGSECLLSMVEDGNPHHYF 120

Query: 121 VATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSE 163
           +ATQD +L  ++++ PG+PL+F ++N + +++P+     FVK+ E
Sbjct: 121 LATQDQNLSMKVKKKPGIPLMFIIQNTIVLDKPSPKTIAFVKAVE 162

[Close]

BLAST of Carg17755 vs. Swiss-Prot
Match: sp|O74862|UTP23_SCHPO (rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp23 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.9e-19
Identity = 77/257 (29.96%), Postives = 118/257 (45.91%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR K+ K +RK +  Y   FGFREP++VL D  F+   LS Q +   AALA+ + G +K 
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADFLKD-LSQQKIDIQAALARTVQGAIKP 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDH-EIRKHAVTCIMEV--IGKSNAEHFF 120
             T+C + +L +      +    A +    RC H +       CI  V  I   N   + 
Sbjct: 61  MITQCCIRQLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYV 120

Query: 121 VATQDTDLKKQLQEIPGVPLIFGLRNALFME---QPTALERQFVKSSEEKRSHISEVELN 180
           VATQD +L++ L+ +PGVPLI+  R+ + +E   + T LE+   +S +   S   ++ L+
Sbjct: 121 VATQDPELRQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEEKLLLS 180

Query: 181 LLRKVTKDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPN 240
             ++   +   + + T E  DL                     D   +   KRK  KGPN
Sbjct: 181 GKKRSANELAIDDQDTKESTDLAGTE-----------------DSAPKANKKRKGPKGPN 239

Query: 241 PLSCLKKKKKVDPNQHP 252
           PLS  K+  K      P
Sbjct: 241 PLSIKKRSSKNHTTDEP 239

[Close]

BLAST of Carg17755 vs. Swiss-Prot
Match: sp|Q12339|UTP23_YEAST (rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP23 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-14
Identity = 63/205 (30.73%), Postives = 94/205 (45.85%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR K+ K +RK +  Y+  F FREP++VL D   V    +N      + L + L   VKV
Sbjct: 1   MRQKRAKSYRKQLLVYSHTFKFREPYQVLVDNQLVLE-CNNSNFNLPSGLKRTLQADVKV 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIR--KHAVTCIMEVIGKS--NAEHF 120
             T+C +  L         A   A      RC+H  +  K    CI  V+  S  N   +
Sbjct: 61  MITQCCIQAL--YETRNDGAINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKHRY 120

Query: 121 FVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLL 180
            VA+QD DL+++L+ +PGVPLI   R+ + ME  +    +  K +EE++ +    + N+ 
Sbjct: 121 VVASQDIDLRRKLRTVPGVPLIHLTRSVMVMEPLSTASAKASKITEEQKLYKGLNDPNI- 180

Query: 181 RKVTKDDEEETEKTNEDGDLVDKNS 202
                      EK  E GD   K S
Sbjct: 181 -----------EKLQESGDGSGKES 190

[Close]

BLAST of Carg17755 vs. TrEMBL
Match: tr|A0A1S3CNY6|A0A1S3CNY6_CUCME (rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.7e-84
Identity = 169/239 (70.71%), Postives = 192/239 (80.33%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR KKQKR R+AVRFYTTC GFR PFK+ CDGTFV+HLLSNQI+PAD A+AK +G RVK+
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVLLELKALG SY+ AFEAAS L TARCDHE RK A  CI++VIG+SN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYAGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QDT+L+KQLQ+IPGVPLIFGLRN LFMEQP+ ++RQFVKS EEKR H+SE E +LL+K  
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEKRMHMSEAERDLLKKKM 180

Query: 181 KDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLSCL 240
           K    E EKTNED DL D+N + QVL           +LKDRPQFKR K KGPNPLSCL
Sbjct: 181 K-YVVEAEKTNEDEDLGDQNLDAQVL---KKKKNILSNLKDRPQFKRNKAKGPNPLSCL 235

[Close]

BLAST of Carg17755 vs. TrEMBL
Match: tr|A0A068VN52|A0A068VN52_COFCA (Uncharacterized protein (Fragment) OS=Coffea canephora OX=49390 GN=GSCOC_T00001786001 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75
Identity = 150/248 (60.48%), Postives = 184/248 (74.19%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR KKQKRHRKAVRFY  CFGFREPFKVLCDGTFVHHLL N+I PAD ALA  LG  VK+
Sbjct: 1   MRVKKQKRHRKAVRFYAACFGFREPFKVLCDGTFVHHLLLNKITPADTALANALGAPVKI 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVL EL++LG SY+++  AA NL TARCDHE RK AV+CI ++IG++N+EHFFVAT
Sbjct: 61  FTTRCVLGELRSLGDSYAESLNAARNLLTARCDHEKRKSAVSCITDIIGENNSEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QD +L+K+ Q++PGVPLI+GLRNALF+EQP+A + QFV+S EE RSH++++E  LL    
Sbjct: 121 QDAELRKKFQKVPGVPLIYGLRNALFLEQPSAFQHQFVRSVEEDRSHMTDLEYKLLNVKK 180

Query: 181 KDDEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLSCLK 240
           K+   E  K + D +  DKN     +           DLKD  QFKRK+ KGPNPLSC K
Sbjct: 181 KNVAFEEAKDSSDAN-EDKNDGTFTVQAIQTNFRKKRDLKDTVQFKRKRAKGPNPLSCKK 240

Query: 241 KKKKVDPN 249
           KK + + N
Sbjct: 241 KKPRENTN 247

[Close]

BLAST of Carg17755 vs. TrEMBL
Match: tr|A0A2G9GN68|A0A2G9GN68_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20690 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 149/264 (56.44%), Postives = 190/264 (71.97%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR KKQKRHR+AVRFYT CFGFREPFKVLCDGTFVHHL++N+I PAD ALA  LG  VK+
Sbjct: 1   MRVKKQKRHRRAVRFYTACFGFREPFKVLCDGTFVHHLIANRITPADTALANTLGAAVKI 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVL EL++LG SYS++  AA  L  ARCDHE RK AV CI EVIG++N EHFFVAT
Sbjct: 61  FTTRCVLAELRSLGDSYSESLNAARCLLAARCDHENRKSAVACITEVIGENNPEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QD +L+K+ QEIPGVP+I+GLRNALF+E+P+  + +F K+SEE+R H++E+E  +L+   
Sbjct: 121 QDAELRKKFQEIPGVPVIYGLRNALFLERPSTFQHEFAKNSEEQRLHMTELEYKMLKAKK 180

Query: 181 K----DDEEETEKTNEDG-DLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNP 240
           K    D+E  +   NED  D + K  +++             D KD+ QFKRKK KGPNP
Sbjct: 181 KRKATDEERYSSDANEDNEDHILKRQDLKT-----NVKRNRIDTKDKVQFKRKKAKGPNP 240

Query: 241 LSCLKKKKKVDPNQHPVSEKKADD 260
           LSC KKK + + +   + E+  D+
Sbjct: 241 LSCKKKKMQGNKDGASLEERSVDN 259

[Close]

BLAST of Carg17755 vs. TrEMBL
Match: tr|A0A2K2AX80|A0A2K2AX80_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G197200v3 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.4e-72
Identity = 141/237 (59.49%), Postives = 181/237 (76.37%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR KKQKRHR+AVRFYT CFGFR+P+KVLCDGTF+HHL+ N I PAD A++ +LGG VK+
Sbjct: 1   MRVKKQKRHRRAVRFYTACFGFRQPYKVLCDGTFIHHLIVNNIAPADTAISNILGGSVKL 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCVL ELK LG SY+++ +AA+ L  ARCDHE  K+A  CI+E+IG++N +HF+V T
Sbjct: 61  FTTRCVLAELKRLGKSYTESLQAANTLMIARCDHEQIKNAEGCIVEIIGENNPDHFYVGT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QDTD++K+ QE+PGVPLIFGLRNALF++ P+A +RQF K+SEE+RSH++E E+ LL+K T
Sbjct: 121 QDTDMRKKFQEVPGVPLIFGLRNALFLQPPSAFQRQFAKNSEEERSHMTEKEVALLKKRT 180

Query: 181 KDDEEETE---KTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPN 235
           KD  E  E    ++E+G   D+N EMQ              +KDRPQFKR K KGPN
Sbjct: 181 KDLVENWEIGDSSDENGGPEDENLEMQ---PQKYSSRKGMKVKDRPQFKRNKAKGPN 234

[Close]

BLAST of Carg17755 vs. TrEMBL
Match: tr|B9SW27|B9SW27_RICCO (rRNA-processing protein UTP23, putative OS=Ricinus communis OX=3988 GN=RCOM_0657470 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 150/258 (58.14%), Postives = 185/258 (71.71%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60
           MR +KQKRHR+AVRFY TC+GFR+P+K+LCDGTFVHHL+ N+I PAD ALA +LGG VK+
Sbjct: 1   MRVRKQKRHRRAVRFYVTCYGFRQPYKILCDGTFVHHLIVNRIAPADEALANILGGPVKL 60

Query: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120
           FTTRCV  ELK LG SYS++ +AA  L TARCDHE  K A  CI+EVIG++N EHFFVAT
Sbjct: 61  FTTRCVHAELKRLGKSYSESLQAAHLLMTARCDHEKVKSAEACILEVIGQNNPEHFFVAT 120

Query: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180
           QD DL+K+ +E+P VPLIFGLRN+L +E P+A +  FVK+SEE+R H +E+E  +L+  T
Sbjct: 121 QDFDLRKKFREVPAVPLIFGLRNSLHLEPPSAFQHAFVKASEEERLHATELEQKMLKTTT 180

Query: 181 KD---DEEETEKTNEDGDLVDKNSEMQVLXXXXXXXXXXXDLKDRPQFKRKKTKGPNPLS 240
           K     E E E         D+N EMQ +           D+KDRPQFKRK+ KGPNPLS
Sbjct: 181 KSILGHEGEIEGPK------DQNLEMQPV-EKKHSARNKTDVKDRPQFKRKRAKGPNPLS 240

Query: 241 CLKKKKKVDPNQHPVSEK 256
           C  KKKK D N  P  +K
Sbjct: 241 C--KKKKKDGNPKPSLDK 249

The following BLAST results are available for this feature:

BLAST of Carg17755 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990879.1	1.5e-132	94.35	rRNA-processing protein UTP23 homolog isoform X1 [Cucurbita maxima]	[more]
XP_022923049.1	2.2e-131	94.68	rRNA-processing protein UTP23 homolog isoform X1 [Cucurbita moschata]	[more]
XP_022990880.1	1.1e-130	93.29	rRNA-processing protein UTP23 homolog isoform X2 [Cucurbita maxima]	[more]
XP_022923059.1	2.4e-130	93.97	rRNA-processing protein UTP23 homolog isoform X2 [Cucurbita moschata]	[more]
XP_023518562.1	1.8e-109	87.28	rRNA-processing protein UTP23 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17755 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34570.1	2.2e-56	47.26	PIN domain-like family protein	[more]
AT2G46230.1	1.7e-08	30.77	PIN domain-like family protein	[more]

BLAST of Carg17755 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9BRU9\|UTP23_HUMAN	3.7e-21	35.76	rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2	[more]
sp\|Q9CX11\|UTP23_MOUSE	3.7e-21	34.36	rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=...	[more]
sp\|Q08DU1\|UTP23_BOVIN	6.9e-20	33.94	rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1	[more]
sp\|O74862\|UTP23_SCHPO	5.9e-19	29.96	rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
sp\|Q12339\|UTP23_YEAST	5.7e-14	30.73	rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]

BLAST of Carg17755 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CNY6\|A0A1S3CNY6_CUCME	1.7e-84	70.71	rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE...	[more]
tr\|A0A068VN52\|A0A068VN52_COFCA	2.5e-75	60.48	Uncharacterized protein (Fragment) OS=Coffea canephora OX=49390 GN=GSCOC_T000017...	[more]
tr\|A0A2G9GN68\|A0A2G9GN68_9LAMI	1.1e-73	56.44	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20690 P...	[more]
tr\|A0A2K2AX80\|A0A2K2AX80_POPTR	3.4e-72	59.49	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G197200v3 PE=...	[more]
tr\|B9SW27\|B9SW27_RICCO	1.3e-71	58.14	rRNA-processing protein UTP23, putative OS=Ricinus communis OX=3988 GN=RCOM_0657...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0032040	small-subunit processome

Vocabulary: **INTERPRO**
Term	Definition
IPR029060	PIN-like_dom_sf
IPR006984	Fcf1/Utp23

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17755-RA	Carg17755-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.1010		coord: 1..156 e-value: 3.6E-49 score: 168.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..225
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..275
None	No IPR available	PANTHER	PTHR12416:SF3	RRNA-PROCESSING PROTEIN UTP23 HOMOLOG	coord: 1..275
None	No IPR available	CDD	cd09866	PIN_Fcf1-Utp23-H	coord: 2..148 e-value: 6.53999E-66 score: 203.961
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 52..149 e-value: 9.7E-26 score: 90.0
IPR029060	PIN-like domain superfamily	SUPERFAMILY	SSF88723	PIN domain-like	coord: 25..149

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17755	Csa5G466330	Cucumber (Chinese Long) v2	carcuB0510
Carg17755	MELO3C005096	Melon (DHL92) v3.5.1	carmeB0483
Carg17755	CSPI05G15940	Wild cucumber (PI 183967)	carcpiB0515
Carg17755	CmaCh04G022230	Cucurbita maxima (Rimu)	carcmaB0665
Carg17755	CmoCh04G023250	Cucurbita moschata (Rifu)	carcmoB0648
Carg17755	Lsi09G008320	Bottle gourd (USVL1VR-Ls)	carlsiB433
Carg17755	Cp4.1LG01g19360	Cucurbita pepo (Zucchini)	carcpeB0670
Carg17755	CsGy5G015670	Cucumber (Gy14) v2	carcgybB0485
Carg17755	MELO3C005096.2	Melon (DHL92) v3.6.1	carmedB0487
Carg17755	CsaV3_5G024970	Cucumber (Chinese Long) v3	carcucB0514
Carg17755	Bhi12G000941	Wax gourd	carwgoB0581

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17755	Cucurbita pepo (Zucchini)	carcpeB0669
Carg17755	Watermelon (Charleston Gray)	carwcgB0462
Carg17755	Watermelon (97103) v1	carwmB0472
Carg17755	Watermelon (97103) v2	carwmbB0501
Carg17755	Wax gourd	carwgoB0580
Carg17755	Silver-seed gourd	carcarB469
Carg17755	Cucurbita maxima (Rimu)	carcmaB0664
Carg17755	Cucurbita moschata (Rifu)	carcmoB0647