Cp4.1LG01g19360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g19360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionrRNA-processing protein UTP23 like
LocationCp4.1LG01 : 16456296 .. 16461082 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAATCCAGATGCCCTACTATGGGTTGGGCTAGGATGAACAAGCAACCCGAGGTTTAAGTTTCGGTCATCTCTCTGCTCACTCTCTGATTTATGTTTCTCTCCGCCGCCGCACGCCGGTGACGCCTCCACTGCCACTTTGCTTTCTTCTCTTCTTCTTTGTCTGCTGCAACCGAAGGTTTCCCGGACTAGGCAATACCACGAAAACAGTTGCTGCAATCGAGAATCGCAAGTACCAGAATAAGCTCTCCTTGTTCTCAGGGTATTTTTCCGTTAAATCTCTTCCTAATCTATAGTTTCTTATTTCAATCATGATTTGAGTTTAATCACAGGAAGATATTTATTATACCTGAAGATTACTGATGTTGTAATGCAGTGATTTGTGTTATCTCAAACGTTCATGACAATTAATTTTTCCTATCAGGATTTTTTATTTATTTATGTTAATCTACAATTTTTAATTTGAAGCATGATTTTCATGTACTGGTTTTGTAATGGAGTGATTTTTTGTTAAATCATAGGTTAGTTACAATCAATTTCTTCTAACGTGAATTTTGTTGATCTTAGTGATGGAATGATTTATTCTACCATGTCTTCTTTCATATTGGAACGTATATTTCAATTGTTTTTTTGGTTATATGTTTAGATGAGATTCAAAAAGCAAAAGCGTCATCGGAAAGCTGTGAGATTCTACACTACATGTTTTGGATTCAGGGAGCCGTTTAAAGTCTTGTGTGACGGAACTTTTGTCCACCATCTTCTCTCCAATCAAATATTGCCGGCCGATGCTGCCCTTGCTAAAGTTCTTGGTGGCCGAGTCAAGGTTTTCACCACTAGGTGTGTTTTCTTTATTGAATCAATCATAGTATGTTTCTTCCTACGCCCATTTGACCTGTTGTTTTTCATTATCTCATTGGTTTGCAGATGTGTACTCTTAGAATTGAAGGCCCTTGGTCCATCCTACTCTAAAGCTTTTGAGGCAGCTAGTAATCTGTCTACTGCAAGGTCAGACACGGACTTATCTTATTATTTCCCTTCTTAACTTGAATAGCTTCTTTTCATGATCATCGATTCTTGACTTTGTCATGTTCTTGTGGTATTAGCGTTGGTTGCTATGAGGTAGTGTAATTGTATTTTCTTGTTCAATTCCATCTTTTCTGAGTTGAAATTATATTTTTGCGTCAGATGTGACCATGAGATAAGAAAGCATGCTGTGACATGTATCATGGAGGTGATTGGTAAATCAAATGCGGAGCATTTTTTTGTTGCCACCCAAGATACTGATCTTAAGAAGCAGCTTCAAGAGGTTAGTTTATTTAATGAATTGATCCCAAAATTATTAATTTTCCATTGCATCTATACTCTTTTCGTTTGCTTCAAGAGCTTATTATCTTTTTCCAACTTCCTAGTTATGAAATGTTTCTAGTTTCTACCTTTTTAACATATGCACTTGGTTAGAAGTTATCTTGGAAGTCTAACTATGTATGTTTGGACTGGTATTTTTGTTATTGTTGGCCATTATTTTTTATTATGTTTAGATTGACTTATCCATGCCTGCTTGTATGGATGGTTTTCTGAAGGGCTGAAATCTTAAACTTGCTTGCTTAATTCTTTTGTATACGTTTGCAGATACCTGGGGTCCCACTTATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCAACTGCCTTGGAACGCCAATTTGTTAAATCTTCGGAAGAAAAAAGATCGCATATTTCTGAGGTCGAACTTAATTTGTTACGGAAAGTAACGAAGGACGACGAAGAGGAAACTGAGAAAACTAACGAAGATGGAGATCTGGTAGACAAAATTTCAGAGATGCAGGTTTTGGAAAAGAAAAAGAAAAAGAAAGGAAATTTAAATGATTTGAAGGATAGACCTCAATTTAAGAGAAAGAAAACAAAGGTATTTTTCCATGATAACATTTTCTCTTTATTGTAGACTTGGTTTTGTGCTTCATTTTTGCATTATTACTAACTTGTAACTTTGATGTTTTGGTCCTATCTTGAGCTTTCTATATTAAAATGCCGTGGAAGGAATAGTCTGTAGTTCTTATATTATTTTTTAGGGGAGTGCATTGGACCCTAGTCTGTTTTCTAAAGGAATTGCACAGAAGAATTTTCGTTCGACTATGAATGCATGTTTTGAGGATGAGTTTACTGATTTTCTTTCTTTTTTAGGGACTTTTCTGCTTATTGGCTCTTGGTGGGTTCATAGTTATAAATAATTTTTTGTAATGACCTAATTGCGTTTATATTCTGATTGATTTATTATTATTATTATTATTATTATTATTATTATATTATTATTATTTTGCAATTGCGTCCTTTGGGAGGGTATTCTCTTTTCACCTGCCCCTAAGTTGTTGTATTTCCTCTGATTTTGCCCAATACATTTTATGTTGATTGTATATAGAAAGCAACTCTTCTGACTCTTAATTCATTCCGACACTTGCAGATGATAAGAAAGTAATTTAAGATACAAAGCCAAGATTTTTTTTTTTTTTATCACATTAATGAAAACTTATGTTTTCCTTCTTGACATGTACATTTTCATTTGATCCTTCCTATTTTCAATTGCATGCATGCTCTAGGATTTTCTAGTCACTTGACTAGAGTTATCGGATAAGAGATAAGCTGGTTTTTTGTGAAATTCCTTTCAGCTATTTTGATTGCAATGTTCGATGCTGAAGGATTTCATAGTGATGTTTGTTATTTAATAAATGTGCAGTGAGGGGGGTGTACATGGGTTGAGTTGGGAAAACTTTTTGGACCAACCTAAAATTTTGGGTTGGTTGGGTTGGTGGGCAATCTGAATAATCTTAAAAGTAGGATAAGTTGTGTTGGGTTGTAACCCTATTTTCGGGTTCCCAAACAAACAAAAATGTCAACCTGCAAATTGACTCGAAGTTTCAGTTTTCTAAAAACTCAACCCAACCCAAATCAGAAACAAATCTAATCTAACCCAACTTTTACGGTTTGGGTTGGGTAGTCTAGGTTGGTTGGGTTCTTGGATCATATGAACACTCCTACAATGAAGCACTGCTATTTATTATTTATATTTATGGTGTCATTCTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTCTTTTTCTACATAACACTATTCAGGGTACCATTCTGTTGCTGCTCTTAGTTATTATATGATGATTATATTGATCGGTCAGACCAAGTTTCTTAATCACTTTCATTTTCTATTCTCTCCACAAAAGCAGGGTCCAAACCCTCTTTCGTGTCTGAAGAAGAAGAAAAAGGTCGATCCAAACCAACATCCAGTTTCAGAGAAGGTAGTTTGCATCTTCTATAATTTCAAATTATTGTTGCATGATTGCATTGCACTTCATTCTGTTTTTTGTATTATTATTATTTGATAGGATTCAATAATTCATTGAATGAAATGAAAACCAATGGAAAACAAATGGGAGATAAGATGCTATTCGATTGGGCGAAGGAAGCTAAGAATTGGGAACATAAGTCGTAACTGAAATTTGTTGAGTTATATTATTTTCTTACTTATGTCTGTCCTTAAACTAGTATAGTATGAATAATACCATTTCTAGTCCTTAAGCTTAGAAAAAAAAACCATTTTTCGATTTAATACCCAGCCAATACTTATTAAAAGCAAAAGAAACTCAAGAAATAAAATTCCTGTCTAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAACGGTAAGAATCAAAGTGATTACCTCTTGAAGTCTAGGAACTATAATTTACATTTTGAAGCTTAAAGACAAAAAGAAAAAAAGGGGAAGTTCGAAGGCAAAACGATCACTTCGAAAGCTTCGGGACTAAAATAGAAGAAGTTTGAAAGTCTAGAGATTAGTCTGAAATATTCTTGAAAATTCATGTCCCAATCCAAGGAAATCATCTTCAAGTATGCTTTTCTTTTGTTTTTTCATCATGAGATAGCATGAAAACAAACTGTTACTTTTTCTTTAATTACATCTTACTTCCTAACCACAATATAATTATCTTCTATGCATTTTATTTCAATGCTTTGTCTTAATACCTATTTGTGCTTCTGGGTCATGATTGAATTTTCTATCTTATGCTGCAGAAGGCTGATGATAATACTACTAAAAGGACTCGTAAACGAAAACGGGCACGAAAGGCCAAAACAACTGCAGAGACGGGAGCGCCATAGTTTGTAGTCATCTGATTTGGCTTTGGTAATTTGGTGCTTTGTGGTAAATGGTAGAATGATTTGGTTTTAACGTTTAGAATGCATCCCTAGCAAGAGGATTAGAAGTCTGAAATTAGATGGGAGTTATGGGTGTTCCCTCACGAAGGTGTAGCTTCCATAGATAAGAAAATTGTATTATGATAAAACCCGTTGCCAACCTAAGCTATAGAGATACAATTTTTTATTTTCACATGTAGTTGATACTGGTCAATATTTTTCTGTTCTTGCATAGGAAATTGATTCTTTGAACCTCAACGAGACCAGCTGAAAGCGAAAATGGATTGTTTCACCTTGTGAGGCGATTTCTACCTTTTTTTTTTGCTATTTATTTTAATAGAGGTGTGTTTAAGCTAGACAGCTTTTAGGGGCTTTTGCTCCTTTGGGTGAACTTGGATTTAGATTTAGATGTGGTTTTAGTAGTTGATGAACAAATTTATTTGTCCATGTGTTTTTGTAAAAGAATCGATCAGGATTTGCTATTGCAGTTGCATACATTGATTGAAACTCCTTAAGAGATCTCGTAAAGCAAAATTTT

mRNA sequence

GGAAAATCCAGATGCCCTACTATGGGTTGGGCTAGGATGAACAAGCAACCCGAGGTTTAAGTTTCGGTCATCTCTCTGCTCACTCTCTGATTTATGTTTCTCTCCGCCGCCGCACGCCGGTGACGCCTCCACTGCCACTTTGCTTTCTTCTCTTCTTCTTTGTCTGCTGCAACCGAAGGTTTCCCGGACTAGGCAATACCACGAAAACAGTTGCTGCAATCGAGAATCGCAAGTACCAGAATAAGCTCTCCTTGTTCTCAGGGGAGCCGTTTAAAGTCTTGTGTGACGGAACTTTTGTCCACCATCTTCTCTCCAATCAAATATTGCCGGCCGATGCTGCCCTTGCTAAAGTTCTTGGTGGCCGAGTCAAGGTTTTCACCACTAGATGTGTACTCTTAGAATTGAAGGCCCTTGGTCCATCCTACTCTAAAGCTTTTGAGGCAGCTAGTAATCTGTCTACTGCAAGATGTGACCATGAGATAAGAAAGCATGCTGTGACATGTATCATGGAGGTGATTGGTAAATCAAATGCGGAGCATTTTTTTGTTGCCACCCAAGATACTGATCTTAAGAAGCAGCTTCAAGAGATACCTGGGGTCCCACTTATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCAACTGCCTTGGAACGCCAATTTGTTAAATCTTCGGAAGAAAAAAGATCGCATATTTCTGAGGTCGAACTTAATTTGTTACGGAAAGTAACGAAGGACGACGAAGAGGAAACTGAGAAAACTAACGAAGATGGAGATCTGGTAGACAAAATTTCAGAGATGCAGGTTTTGGAAAAGAAAAAGAAAAAGAAAGGAAATTTAAATGATTTGAAGGATAGACCTCAATTTAAGAGAAAGAAAACAAAGGGTCCAAACCCTCTTTCGTGTCTGAAGAAGAAGAAAAAGGTCGATCCAAACCAACATCCAGTTTCAGAGAAGAAGGCTGATGATAATACTACTAAAAGGACTCGTAAACGAAAACGGGCACGAAAGGCCAAAACAACTGCAGAGACGGGAGCGCCATAGTTTGTAGTCATCTGATTTGGCTTTGGTAATTTGGTGCTTTGTGGTAAATGGTAGAATGATTTGGTTTTAACGTTTAGAATGCATCCCTAGCAAGAGGATTAGAAGTCTGAAATTAGATGGGAGTTATGGGTGTTCCCTCACGAAGGTGTAGCTTCCATAGATAAGAAAATTGTATTATGATAAAACCCGTTGCCAACCTAAGCTATAGAGATACAATTTTTTATTTTCACATGTAGTTGATACTGGTCAATATTTTTCTGTTCTTGCATAGGAAATTGATTCTTTGAACCTCAACGAGACCAGCTGAAAGCGAAAATGGATTGTTTCACCTTGTGAGGCGATTTCTACCTTTTTTTTTTGCTATTTATTTTAATAGAGGTGTGTTTAAGCTAGACAGCTTTTAGGGGCTTTTGCTCCTTTGGGTGAACTTGGATTTAGATTTAGATGTGGTTTTAGTAGTTGATGAACAAATTTATTTGTCCATGTGTTTTTGTAAAAGAATCGATCAGGATTTGCTATTGCAGTTGCATACATTGATTGAAACTCCTTAAGAGATCTCGTAAAGCAAAATTTT

Coding sequence (CDS)

ATGGAGGTGATTGGTAAATCAAATGCGGAGCATTTTTTTGTTGCCACCCAAGATACTGATCTTAAGAAGCAGCTTCAAGAGATACCTGGGGTCCCACTTATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCAACTGCCTTGGAACGCCAATTTGTTAAATCTTCGGAAGAAAAAAGATCGCATATTTCTGAGGTCGAACTTAATTTGTTACGGAAAGTAACGAAGGACGACGAAGAGGAAACTGAGAAAACTAACGAAGATGGAGATCTGGTAGACAAAATTTCAGAGATGCAGGTTTTGGAAAAGAAAAAGAAAAAGAAAGGAAATTTAAATGATTTGAAGGATAGACCTCAATTTAAGAGAAAGAAAACAAAGGGTCCAAACCCTCTTTCGTGTCTGAAGAAGAAGAAAAAGGTCGATCCAAACCAACATCCAGTTTCAGAGAAGAAGGCTGATGATAATACTACTAAAAGGACTCGTAAACGAAAACGGGCACGAAAGGCCAAAACAACTGCAGAGACGGGAGCGCCATAG

Protein sequence

MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQFKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKAKTTAETGAP
Homology
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BLAST of Cp4.1LG01g19360 vs. Swiss-Prot
Match: UTP23_MOUSE (rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 55/172 (31.98%), Postives = 86/172 (50.00%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           + ++ + N  H+FVATQD +L  +++  PG+PL+F ++N + +++P+     FVK+ E  
Sbjct: 105 LSMVDEGNPHHYFVATQDQNLSVKVKRTPGIPLMFIIQNTIVLDKPSPRTVAFVKAVEAG 164

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
           +     V ++  + + +  EE+    N D            L ++++KK           
Sbjct: 165 QL----VSVHEKQSIKQLKEEQGLVRNPD------------LRRRRRKK----------- 224

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKAKT 173
              KK  GPNPLSCLKKKKK    + P SEKK         RKRKR R   T
Sbjct: 225 ---KKVGGPNPLSCLKKKKKAQDTKSPASEKK---------RKRKRIRNRST 237

[Close]
BLAST of Cp4.1LG01g19360 vs. Swiss-Prot
Match: UTP23_HUMAN (rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 56/168 (33.33%), Postives = 84/168 (50.00%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           + ++ + N  H+FVATQD +L  ++++ PGVPL+F ++N + +++P+     FVK+ E  
Sbjct: 105 LSMVEEGNPHHYFVATQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESG 164

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
                       + V+  ++E  +   E+  LV         E+ ++K            
Sbjct: 165 ------------QLVSVHEKESIKHLKEEQGLVKN------TEQSRRK------------ 224

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRAR 169
            KRKK  GPNPLSCLKKKKK    Q   SEKK         RKRKR R
Sbjct: 225 -KRKKISGPNPLSCLKKKKKAPDTQSSASEKK---------RKRKRIR 232

[Close]
BLAST of Cp4.1LG01g19360 vs. Swiss-Prot
Match: UTP23_BOVIN (rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-08
Identity = 51/173 (29.48%), Postives = 84/173 (48.55%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           + ++   N  H+F+ATQD +L  ++++ PG+PL+F ++N + +++P+     FVK+ E  
Sbjct: 105 LSMVEDGNPHHYFLATQDQNLSMKVKKKPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESG 164

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
                       + V+  +++   +  E+  LV    + +   +KK+KK +         
Sbjct: 165 ------------QLVSVHEKQSIRQLKEEQGLV---KDPEQRRRKKRKKVS--------- 224

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKAKTT 174
                  GPNPLSCLKKKKK        SEKK         RKRKR R   T+
Sbjct: 225 -------GPNPLSCLKKKKKTQDTNSSASEKK---------RKRKRIRNRSTS 237

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BLAST of Cp4.1LG01g19360 vs. TrEMBL
Match: A0A0A0KTT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G466330 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-49
Identity = 123/178 (69.10%), Postives = 143/178 (80.34%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           ++VIG+SN EHFFVATQDT+L+KQLQ+IPGVPLIFGLRNALFMEQP+ ++RQFVKS EEK
Sbjct: 62  LDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEK 121

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
           R H+SEVE +LL+K TK    E EKTNED DL D+  +  VL  KKKKK   ++LKDRPQ
Sbjct: 122 RMHVSEVERDLLKKKTKY-VVEAEKTNEDEDLEDQNLDTLVL--KKKKKNIPSNLKDRPQ 181

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTT--KRTRKRKRARKAKTTAET 177
           FKR K KGPNPLSCL  KKKV P+ HPVSEKK DD++   KRTRKRKR+RKAK   ET
Sbjct: 182 FKRNKAKGPNPLSCL--KKKVKPSPHPVSEKKKDDDSVAQKRTRKRKRSRKAKAPTET 234

[Close]
BLAST of Cp4.1LG01g19360 vs. TrEMBL
Match: M1TD96_9ROSI (Maternal effect embryo arrest 21 OS=Dimocarpus longan PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 96/182 (52.75%), Postives = 127/182 (69.78%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           M+VIG+ N EHFFVATQD DL+K+LQE+PGVPL++GLRN L +E  +A +RQFVK SEE 
Sbjct: 105 MDVIGEKNPEHFFVATQDVDLRKKLQEVPGVPLVYGLRNTLLLEPLSASQRQFVKVSEEG 164

Query: 61  RSHISEVELNLLRKVTKD---DEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKD 120
           RSH++E+E  +L+K  KD    +E  +  NED ++ D+  EMQ ++KK   +  L  +KD
Sbjct: 165 RSHMTELEHKILKKRAKDILETDEMRDSLNEDENVGDQKLEMQTVKKKDNTRKQLG-VKD 224

Query: 121 RPQFKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTK-RTRKRKRARKAKTTAET 179
            PQFKRKK KGPNPLSC KK  + +PN     E K  DNT + R++KRKR+ K K  AET
Sbjct: 225 GPQFKRKKAKGPNPLSCKKKTSRENPNMVSGKESKDGDNTMRSRSKKRKRSHKGKALAET 284

[Close]
BLAST of Cp4.1LG01g19360 vs. TrEMBL
Match: G7JZK2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g071380 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-35
Identity = 93/182 (51.10%), Postives = 133/182 (73.08%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           MEV+G++N+EHFFVA+QDTDL+K+L+E+PGVPLIFGLRNALF+E P+A ++++VK+SEE+
Sbjct: 109 MEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIFGLRNALFLESPSAFQKEYVKTSEER 168

Query: 61  RSHISEVELNLL--RKVTKDDEEETEKTN----EDGDLVDKISEMQVLEKKKKKKGNLND 120
           R H+++ E  +   R + K  + E + +N    E+ DL D I+  Q + K+     N N 
Sbjct: 169 RLHMTDKEYQIFKDRAMKKLADGEADNSNAEIVENNDLGDSIASAQAI-KRSIISRNQNG 228

Query: 121 LKDRPQFKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKAKTTA 177
           ++D+PQFKR+K KGPNPLSC KKK + + N +P  E K  DNT KR+RKRKR+RK + + 
Sbjct: 229 VRDKPQFKRRKAKGPNPLSCKKKKSRENQN-NPTKETKG-DNTVKRSRKRKRSRKGQKST 287

[Close]
BLAST of Cp4.1LG01g19360 vs. TrEMBL
Match: G7IRX0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g097630 PE=4 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 93/182 (51.10%), Postives = 133/182 (73.08%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           MEV+G++N+EHFFVA+QDTDL+K+L+E+PGVPLIFGLRNALF+E P+A ++++VK+SEE+
Sbjct: 105 MEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIFGLRNALFLESPSAFQKEYVKTSEER 164

Query: 61  RSHISEVELNLL--RKVTKDDEEETEKTN----EDGDLVDKISEMQVLEKKKKKKGNLND 120
           R H+++ E  +   R + +  + E + +N    E+ DL D I+  Q + K+     N N 
Sbjct: 165 RLHMTDKEYQIFKDRAMKRLADGEADNSNAEIVENNDLGDSIASAQAI-KRSIISRNHNG 224

Query: 121 LKDRPQFKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKAKTTA 177
           +KD+PQFKR+K KGPNPLSC KKK + + N +P  E K  DNT KR+RKRKR++K K + 
Sbjct: 225 VKDKPQFKRRKAKGPNPLSCKKKKSRENQN-NPTKETKG-DNTVKRSRKRKRSQKGKKST 283

[Close]
BLAST of Cp4.1LG01g19360 vs. TrEMBL
Match: Q2HS41_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g097630 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 93/182 (51.10%), Postives = 133/182 (73.08%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           MEV+G++N+EHFFVA+QDTDL+K+L+E+PGVPLIFGLRNALF+E P+A ++++VK+SEE+
Sbjct: 109 MEVVGENNSEHFFVASQDTDLRKKLEEVPGVPLIFGLRNALFLESPSAFQKEYVKTSEER 168

Query: 61  RSHISEVELNLL--RKVTKDDEEETEKTN----EDGDLVDKISEMQVLEKKKKKKGNLND 120
           R H+++ E  +   R + +  + E + +N    E+ DL D I+  Q + K+     N N 
Sbjct: 169 RLHMTDKEYQIFKDRAMKRLADGEADNSNAEIVENNDLGDSIASAQAI-KRSIISRNHNG 228

Query: 121 LKDRPQFKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKAKTTA 177
           +KD+PQFKR+K KGPNPLSC KKK + + N +P  E K  DNT KR+RKRKR++K K + 
Sbjct: 229 VKDKPQFKRRKAKGPNPLSCKKKKSRENQN-NPTKETKG-DNTVKRSRKRKRSQKGKKST 287

[Close]
BLAST of Cp4.1LG01g19360 vs. TAIR10
Match: AT2G34570.1 (AT2G34570.1 PIN domain-like family protein)

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-24
Identity = 75/185 (40.54%), Postives = 105/185 (56.76%), Query Frame = 1 

Query: 2   EVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKR 61
           EVIG  N EHFF+ TQD + +++LQ+   VPL+FGLRN L ++QP+  +RQ  K SE KR
Sbjct: 106 EVIGVQNTEHFFLGTQDAEFRRKLQQESIVPLVFGLRNILLIDQPSDFQRQSAKDSENKR 165

Query: 62  SHISEVELNLL----RKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKD 121
             +++ E  LL     K+   + +E    NE+  +   +S    L            +KD
Sbjct: 166 LTMTDTEKKLLVKRTAKIIASNRKEATIANEEWGMPRVVSTKNGL-----------GVKD 225

Query: 122 RPQFKRKKTKGPNPLSCLKKKK-------KVDPNQHPVSEKKADDNTTKRTRKRKRARKA 176
           RPQFKR + KGPNPLSC+KKKK       K D N +   EKK   + T++ R RKR++K 
Sbjct: 226 RPQFKRNRAKGPNPLSCMKKKKENPQSKSKADSNSNAQKEKKEGGSDTQK-RSRKRSKKG 278

[Close]
BLAST of Cp4.1LG01g19360 vs. NCBI nr
Match: gi|449452036|ref|XP_004143766.1| (PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.6e-49
Identity = 123/178 (69.10%), Postives = 143/178 (80.34%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           ++VIG+SN EHFFVATQDT+L+KQLQ+IPGVPLIFGLRNALFMEQP+ ++RQFVKS EEK
Sbjct: 105 LDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEK 164

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
           R H+SEVE +LL+K TK    E EKTNED DL D+  +  VL  KKKKK   ++LKDRPQ
Sbjct: 165 RMHVSEVERDLLKKKTKY-VVEAEKTNEDEDLEDQNLDTLVL--KKKKKNIPSNLKDRPQ 224

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTT--KRTRKRKRARKAKTTAET 177
           FKR K KGPNPLSCL  KKKV P+ HPVSEKK DD++   KRTRKRKR+RKAK   ET
Sbjct: 225 FKRNKAKGPNPLSCL--KKKVKPSPHPVSEKKKDDDSVAQKRTRKRKRSRKAKAPTET 277

[Close]
BLAST of Cp4.1LG01g19360 vs. NCBI nr
Match: gi|700195959|gb|KGN51136.1| (hypothetical protein Csa_5G466330 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.6e-49
Identity = 123/178 (69.10%), Postives = 143/178 (80.34%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           ++VIG+SN EHFFVATQDT+L+KQLQ+IPGVPLIFGLRNALFMEQP+ ++RQFVKS EEK
Sbjct: 62  LDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEK 121

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
           R H+SEVE +LL+K TK    E EKTNED DL D+  +  VL  KKKKK   ++LKDRPQ
Sbjct: 122 RMHVSEVERDLLKKKTKY-VVEAEKTNEDEDLEDQNLDTLVL--KKKKKNIPSNLKDRPQ 181

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTT--KRTRKRKRARKAKTTAET 177
           FKR K KGPNPLSCL  KKKV P+ HPVSEKK DD++   KRTRKRKR+RKAK   ET
Sbjct: 182 FKRNKAKGPNPLSCL--KKKVKPSPHPVSEKKKDDDSVAQKRTRKRKRSRKAKAPTET 234

[Close]
BLAST of Cp4.1LG01g19360 vs. NCBI nr
Match: gi|778702877|ref|XP_011655276.1| (PREDICTED: rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 7.6e-49
Identity = 122/177 (68.93%), Postives = 141/177 (79.66%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           ++VIG+SN EHFFVATQDT+L+KQLQ+IPGVPLIFGLRNALFMEQP+ ++RQFVKS EEK
Sbjct: 105 LDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEK 164

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
           R H+SEVE +LL+K TK    E EKTNED DL D+   +  L  KKKKK   ++LKDRPQ
Sbjct: 165 RMHVSEVERDLLKKKTK-YVVEAEKTNEDEDLEDQ--NLDTLVLKKKKKNIPSNLKDRPQ 224

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTT-KRTRKRKRARKAKTTAET 177
           FKR K KGPNPLSCL  KKKV P+ HPVSEKK DD+   KRTRKRKR+RKAK   ET
Sbjct: 225 FKRNKAKGPNPLSCL--KKKVKPSPHPVSEKKDDDSVAQKRTRKRKRSRKAKAPTET 276

[Close]
BLAST of Cp4.1LG01g19360 vs. NCBI nr
Match: gi|659072385|ref|XP_008465424.1| (PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 121/178 (67.98%), Postives = 140/178 (78.65%), Query Frame = 1 

Query: 1   MEVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEK 60
           ++VIG+SN EHFFVATQDT+L+KQLQ+IPGVPLIFGLRN LFMEQP+ ++RQFVKS EEK
Sbjct: 105 LDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEK 164

Query: 61  RSHISEVELNLLRKVTKDDEEETEKTNEDGDLVDKISEMQVLEKKKKKKGNLNDLKDRPQ 120
           R H+SE E +LL+K  K    E EKTNED DL D+  + QVL   KKKK  L++LKDRPQ
Sbjct: 165 RMHMSEAERDLLKKKMK-YVVEAEKTNEDEDLGDQNLDAQVL---KKKKNILSNLKDRPQ 224

Query: 121 FKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDN--TTKRTRKRKRARKAKTTAET 177
           FKR K KGPNPLSCL  KKKV P+ HPVSEKK DD+    KRTRKRKR+RKAK   ET
Sbjct: 225 FKRNKAKGPNPLSCL--KKKVKPSPHPVSEKKKDDDDLAQKRTRKRKRSRKAKAPTET 276

[Close]
BLAST of Cp4.1LG01g19360 vs. NCBI nr
Match: gi|502096063|ref|XP_004490614.1| (PREDICTED: rRNA-processing protein UTP23 homolog [Cicer arietinum])

HSP 1 Score: 158.7 bits (400), Expect = 9.6e-36
Identity = 93/183 (50.82%), Postives = 132/183 (72.13%), Query Frame = 1 

Query: 2   EVIGKSNAEHFFVATQDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKR 61
           EV+G++N+EHFFVA+QDT L+K+L+EIPGVPLIFGLRNALF+E P+A +R++VK+SEE R
Sbjct: 106 EVVGENNSEHFFVASQDTGLRKKLEEIPGVPLIFGLRNALFLESPSAFQREYVKTSEEGR 165

Query: 62  SHISEVELNLLRKVTKD----DEEETEKTN--EDGDLVDKISEMQVLEKKKKKKGNLNDL 121
            H++E E  + R   K+     E +T  T   E+ D  D+I+  Q ++++   +  +  +
Sbjct: 166 LHMTEKEFQIFRDRAKNILAGGEADTSNTEIIENKDSGDQIASSQAIKRRITSRNQMG-I 225

Query: 122 KDRPQFKRKKTKGPNPLSCLKKKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKAKTTAE 179
           KD+PQFKRK+ KGPNPLSC  KK + + N +P  E K D++T KR RKRKR+RK +T AE
Sbjct: 226 KDKPQFKRKRAKGPNPLSCKPKKSRENQN-NPSKESKGDNDTVKRNRKRKRSRKGQTPAE 285

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g19360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UTP23_MOUSE2.4e-1031.98rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1[more]
UTP23_HUMAN4.0e-1033.33rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2[more]
UTP23_BOVIN2.9e-0829.48rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1[more]
BLAST of Cp4.1LG01g19360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTT8_CUCSA1.8e-4969.10Uncharacterized protein OS=Cucumis sativus GN=Csa_5G466330 PE=4 SV=1[more]
M1TD96_9ROSI1.1e-3552.75Maternal effect embryo arrest 21 OS=Dimocarpus longan PE=2 SV=1[more]
G7JZK2_MEDTR2.5e-3551.10Uncharacterized protein OS=Medicago truncatula GN=MTR_5g071380 PE=4 SV=1[more]
G7IRX0_MEDTR3.3e-3551.10Uncharacterized protein OS=Medicago truncatula GN=MTR_2g097630 PE=4 SV=2[more]
Q2HS41_MEDTR3.3e-3551.10Uncharacterized protein OS=Medicago truncatula GN=MTR_2g097630 PE=4 SV=1[more]
BLAST of Cp4.1LG01g19360 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G34570.14.0e-2440.54 PIN domain-like family protein[more]
BLAST of Cp4.1LG01g19360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452036|ref|XP_004143766.1|2.6e-4969.10PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus][more]
gi|700195959|gb|KGN51136.1|2.6e-4969.10hypothetical protein Csa_5G466330 [Cucumis sativus][more]
gi|778702877|ref|XP_011655276.1|7.6e-4968.93PREDICTED: rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus][more]
gi|659072385|ref|XP_008465424.1|2.9e-4867.98PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo][more]
gi|502096063|ref|XP_004490614.1|9.6e-3650.82PREDICTED: rRNA-processing protein UTP23 homolog [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
Vocabulary: INTERPRO
TermDefinition
IPR006984Fcf1/Utp23
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005730 nucleolus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0070181 small ribosomal subunit rRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g19360.1Cp4.1LG01g19360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006984rRNA-processing protein Fcf1/Utp23PFAMPF04900Fcf1coord: 2..45
score: 1.5
NoneNo IPR availablePANTHERPTHR12416UNCHARACTERIZEDcoord: 1..95
score: 1.3E-40coord: 115..176
score: 1.3
NoneNo IPR availablePANTHERPTHR12416:SF3RRNA-PROCESSING PROTEIN UTP23 HOMOLOGcoord: 1..95
score: 1.3E-40coord: 115..176
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g19360Cucsa.033650Cucumber (Gy14) v1cgycpeB0013
Cp4.1LG01g19360CmaCh04G022230Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g19360CmoCh04G023250Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g19360Csa5G466330Cucumber (Chinese Long) v2cpecuB421
Cp4.1LG01g19360MELO3C005096Melon (DHL92) v3.5.1cpemeB359
Cp4.1LG01g19360CSPI05G15940Wild cucumber (PI 183967)cpecpiB420
Cp4.1LG01g19360Lsi09G008320Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g19360MELO3C005096.2Melon (DHL92) v3.6.1cpemedB419
Cp4.1LG01g19360CsaV3_5G024970Cucumber (Chinese Long) v3cpecucB0523
Cp4.1LG01g19360Bhi12G000944Wax gourdcpewgoB0491
Cp4.1LG01g19360CsGy5G015670Cucumber (Gy14) v2cgybcpeB629
Cp4.1LG01g19360Carg17755Silver-seed gourdcarcpeB0670
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g19360Wax gourdcpewgoB0490
Cp4.1LG01g19360Wax gourdcpewgoB0493
Cp4.1LG01g19360Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g19360Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g19360Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g19360Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g19360Watermelon (97103) v1cpewmB440
Cp4.1LG01g19360Silver-seed gourdcarcpeB1158