CsaV3_5G012600 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G012600
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Tobamovirus multiplication protein like
Location	chr5 : 8123721 .. 8127866 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTGACAATGCAGTTCACAGTGCTGCCGATGTCTATCTCCAGTTAATCAAAGAGGATCTTGACACACTTAGAGAGGATCTTGACACGCTTACTCTTCCCTGGATTAAGATCAATTGTGAAAGACATAGGAAAAGTCACAGGAGAAAAAAAGGTAACTCCATGGTTTGGTTCTCTTACGGCCTCCCTATTCCTTGAGGGCCAAAGGGGTTGGATCATCACAAAGATCTCCCTTCTGTCTCCTTCTGTAGTCTCATACCTGCATTGGAAGTAAAGTACCCTCCTGATCTGCAAAATTGTTTTCCTTTCTTCTGAACACACCTTTGAATTTGGAAAATCTCACACAGTTATCACTCATCTTCTTTATTTTTGGACCTTAATTGTCTTCTCAGACCTCCTCAGCATTCTCGGTAATTTGTTGTATAACAAATTTTCTCATTATCCGTTAAAGTGTGGATGGAAAATTTATTTTTCTTCTTCAAAACACTTTAAAAAATTGGCGTACAAAATGTATCCGTTTCTTTGGTCCCAATCACTACCTTTAAAGTTTTAATAAATATTTATAGCAGAGGGTTTTAATTATGGTTAGAAAGTTAATTACGAATAAGTTAGCATGGTTGATAGTATTTTATAAACGAGAATTGTCAAAAATGACAAAATGGACAAACTATTTACACTTTATGGCAAAATCAAGTGCAATGAGTTTTTGTCGTTTAGAGGTTTTTTCCATAAAGTGTAAATAGTTTGTATTTTTTTATTATTCTTGAAAAAACCCCTTTTATAAAATTGATATTTAAAGATAATAAGTAAGTTTTAGTTTTCTATATATTTTAACTTGGAATGACTAAATTCTTTATTATGATTATTATTATTATTTTGAAACATAAATATATCATTAATAAATGAAATTAGGGGAACACCCCAAACACCTAAAGACGATAACAAAAGAGATGGCCATGTAACTAAAAAGATAAGCTATAAGTTTTAAAAGGGTGCTTTATTTTACATTGCCCTGAGAAAAAACAGTAAACAGAACAAATCCATAAAATGGTTAAAAGTGGAAAAAAGAGTCAGAAGAAAGGTGCCAATTCCTCTTGCCCCATTAGATCCAAAGGAACGTGCATAACAAAACCAACCAAATCATCTTCTTAGTACCATCAAAGGATCACCCACCAATAATGAAGCAAGAAGATCGAAGATAGTATTAGGAGAGGACACAGCAGGGACCAACCAAAAGCTTCCAAGATGAGAATTCATAACATTGATGCAAAAGGGCAATGAAATTGGTTGGTTCTATTTAAAAAAAGTGAAAAAGAAAAGAGATGGATTGGAGACTCAAAATGATGACAACACACGAGACACAAGGATGGTGAAATTGAAAGATATCTATAAGGCATTTGACGCCAAAGGCGATTGGCAGTATTTGATGGCTCCTGAACTAAGAAATTCTTTTTTAACTATAAAACAATAAAAATGTCGTGAGAGATTTCCATGCTGAATCCAATCCTAAAATCCAATTTGTGTAATTACCTACCTAGATTTAAACAAATTGTGGAATTGGACCATTTACAATTCTGTAAATTACAAATTGAAAGTTGTGGAAATCGTCACTGAACTATAAAGGTTGGTACCCCAAAATTTTCCTAATTTTTTGGGTTGCCATAATTGTATATTATTTGCCTTCAAACTTACGAAACTTCATCCCATTTTGTTATGGAGATACAATGATGGGGTTTGTAGCATGTTAAAAACTTTAGGTGTAATTTCTCAGATTGAAAGTTCAATGTAATGATTGTATCAACTTTTGGTTTAGCAGTGGCTTCTTTTGTGCTAAAATATTTAAGGTCTTTTATGCAGAACTGTTAATCATTTAAACTTTAGTAGATGAAGTTTTTACCTTTTTTGGCTTTTCTCTTTGTTAATTCTATATAACACAAGTGCAACTTTCTCTTGGGTTGTGAAGTTTTTTTCTTTTCTTTTGATTTAACATTCACTTGGTTTTATTTGGGCTTGATTGGAGACGTTTCTTAGATGGTCTCTCTCTGTTTTCTCGATATGTATATACTTCTTTCATGGAATTTCTTTTCCTTTTTCTCTATGCCATTTTATTATTTTAGTTTTTCTCCTTGAAAGCTTGGTTATTCATCAAGTGGCAGTCCTGAAAATTTGGAGATCATACTTATAATTTGCTAATGGTTTCTTTAATCATCTCTTGGTAGATTATTCTTGATGTTACAGCGCTTCCCTGTGGAATCCAAAGGAAGACGTAAGAAGTTGCAAGAGGTACTTACATTCCTTCAGATATAAGACTGCTAGACATCCTTTTAGTAGTTTGAGCCTTTTTGAACCTTTTCTGTTGGTTTACCCCTTAATTTTTTCTTGTTTTGGATTGGATAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTAGTCAGATGCATCATGGTGAGTCTACTTCTGCCCAACATAGTTATGCCGTATCAATAGGAGTGACCAGATATTTAACTGACAAATGGAACCTTTTCTTTTTCCTTACTGTTTTATATCACTACGTTCTATCCATATTTGTTTCAAATACATGTACAGGTCTGCAGTGAATATTTTTCAGTTTTAGTATGAAGTATGAATGGTCAAAATTTAAAGTTATTTGTGATAAATTTTAAGTTGGGAACTATCCGTGAGGCCCCCAATTATACATAGATTTAAAAGAAGGGGTAGAAAGAGAGATTCACGTGAGGGTTAGTTGTTAATGAAGAGTGGAGTTTGCGAGCATTGTGGGTGCTATGTGAAAAGAGAGGTAAGAGGTTTATGAAGGGTTTTGTTATTAGAGTGCAAGGTACGTGAATTTTGTTCAGGAACAGGCTTGGATGAGATAGTTTCCAGCCCTCTAGAAAGTTCTTGTTTGCTAGGGCTCATCTTGTTCTGTTATTCCCTTGCTGTATTTTCCCTCAAATATAATATTTAACACTCTTCCTCACTTATGAGATCGAAATATGAAGAAATGAATATTAATTAGGGAGGAAATATAGCTAGTGGAAATGCATATTAGATGGGGAGGAAATGTAACATTGCAAAGGCCTGAACACACGATCTTTCCAGACAATCTGCTCAGATACCTATCATCTTAAATCATCAATCGACCCAAAAACTTAAGCTTATAGGTGTAACTTAACATCTAACAAACATACATATATAAATCATATCAGCTTGCTCTGTTTCTTGGGATTGCTTATTGTTGGGAATTCCTAACAGTGTCATTTGTAATGGAGGTGTTAATTATTGTAATTAGCATTTGTTACTTGATTGTGCATGAGAGTTAGCATAGAGAGAAATTGTAATAAATAAGATATGAAGACAATCTAAAGAAGGATAGTTACATGGATAGTTTGCCTTTCAGTTGCTCTATATTCTCACTCTACTCTATATTCATTGTAATCCTGGCTTAATTTATTATCTTGTGCTGTAGATGTGCTTTAATGCTTTTGATCAAGCCGCTGACCTCGACGTTTTGGATCATCCGGTTCTAAATTTTATTTACTACCTGGTAATTATGGGATTGTGGTTGTTAATGCATATTATCTATGGTATTTCACTTGTGGTTACTTGTTTTACTGGAATCTTTAGTGACTTGGGATATTCTTATTAACATGATGATAGGATGATGCTATTAGAGTATTATAAGGATAAATTAGCAAGTAGGTAGGGGAATTTTGTTATAAATAGAGATTAGGAAATGAGGAAGGTAGGTGTTAGGTATCCTAGCTTCCTGACCTGTAAAAATTAAGAAATACAGAGTATTGAAAATGGCAGCAGTTATATTAGTTCTCAATATACAATGCTTTATGAATCCACAACACTAAACGCAATTGCAAAACTCTTAACCGTTTTTTACCCCTTCTAGTATAAGTCTTGAGGCCATTTCTATGGACAATATTTTGGTGAGTGATTTAGGGTATGTTAGTGTGAGGTTAATTCTATATTCTGAAAAATATGCCACGTCCTTGTTAGAGGCAGGGTGTTTTACTTGTTTTTCCATTTCCGCAGTTGGTTGAGATTGTACCATCCTCTATGGTCCTCTTCATTCTTCGAAAGCTGCCCCCGAAACGAGGAATCACACAGTACCATCCTATCCGTTAA

mRNA sequence

ATGGCTTGTGACAATGCAGTTCACAGTGCTGCCGATGTCTATCTCCAGTTAATCAAAGAGGATCTTGACACACTTAGAGAGGATCTTGACACGCTTACTCTTCCCTGGATTAAGATCAATTGTGAAAGACATAGGAAAAGTCACAGGAGAAAAAAAGGTAACTCCATGACCTCCTCAGCATTCTCGCGCTTCCCTGTGGAATCCAAAGGAAGACGTAAGAAGTTGCAAGAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTAGTCAGATGCATCATGATGTGCTTTAATGCTTTTGATCAAGCCGCTGACCTCGACGTTTTGGATCATCCGGTTCTAAATTTTATTTACTACCTGTTGGTTGAGATTGTACCATCCTCTATGGTCCTCTTCATTCTTCGAAAGCTGCCCCCGAAACGAGGAATCACACAGTACCATCCTATCCGTTAA

Coding sequence (CDS)

ATGGCTTGTGACAATGCAGTTCACAGTGCTGCCGATGTCTATCTCCAGTTAATCAAAGAGGATCTTGACACACTTAGAGAGGATCTTGACACGCTTACTCTTCCCTGGATTAAGATCAATTGTGAAAGACATAGGAAAAGTCACAGGAGAAAAAAAGGTAACTCCATGACCTCCTCAGCATTCTCGCGCTTCCCTGTGGAATCCAAAGGAAGACGTAAGAAGTTGCAAGAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTAGTCAGATGCATCATGATGTGCTTTAATGCTTTTGATCAAGCCGCTGACCTCGACGTTTTGGATCATCCGGTTCTAAATTTTATTTACTACCTGTTGGTTGAGATTGTACCATCCTCTATGGTCCTCTTCATTCTTCGAAAGCTGCCCCCGAAACGAGGAATCACACAGTACCATCCTATCCGTTAA

Protein sequence

MACDNAVHSAADVYLQLIKEDLDTLREDLDTLTLPWIKINCERHRKSHRRKKGNSMTSSAFSRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLLVEIVPSSMVLFILRKLPPKRGITQYHPIR

Homology

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BLAST of CsaV3_5G012600 vs. NCBI nr
Match: XP_004140406.1 (PREDICTED: protein TOM THREE HOMOLOG 1 isoform X1 [Cucumis sativus] >KGN50793.1 hypothetical protein Csa_5G264280 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 3.5e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL
Sbjct: 204 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 263

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEIVPSSMVLFILRKLPPKRGITQYHPIR
Sbjct: 264 VEIVPSSMVLFILRKLPPKRGITQYHPIR 292

[Close]

BLAST of CsaV3_5G012600 vs. NCBI nr
Match: NP_001284434.1 (protein TOM THREE HOMOLOG 1 [Cucumis melo] >BAE43841.1 tobamovirus multiplication 1 homolog [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 3.5e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL
Sbjct: 204 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 263

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEIVPSSMVLFILRKLPPKRGITQYHPIR
Sbjct: 264 VEIVPSSMVLFILRKLPPKRGITQYHPIR 292

[Close]

BLAST of CsaV3_5G012600 vs. NCBI nr
Match: XP_022977192.1 (protein TOM THREE HOMOLOG 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-42
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL
Sbjct: 204 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 263

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYHPIR
Sbjct: 264 VEILPSSLVLFILRKLPPKRGITQYHPIR 292

[Close]

BLAST of CsaV3_5G012600 vs. NCBI nr
Match: XP_023539850.1 (tobamovirus multiplication protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-42
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL
Sbjct: 204 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 263

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYHPIR
Sbjct: 264 VEILPSSLVLFILRKLPPKRGITQYHPIR 292

[Close]

BLAST of CsaV3_5G012600 vs. NCBI nr
Match: XP_022942344.1 (protein TOM THREE HOMOLOG 1 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 3.9e-42
Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFL+RCIMMCFNAFDQAADLDVLDHPVLNFIYY+L
Sbjct: 204 RFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMMCFNAFDQAADLDVLDHPVLNFIYYML 263

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYHPIR
Sbjct: 264 VEILPSSLVLFILRKLPPKRGITQYHPIR 292

[Close]

BLAST of CsaV3_5G012600 vs. TAIR10
Match: AT1G14530.1 (Protein of unknown function (DUF1084))

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-43
Identity = 80/89 (89.89%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF+AFD AADLDVLDHP+LNFIYYLL
Sbjct: 205 RFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIYYLL 264

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYH I+
Sbjct: 265 VEILPSSLVLFILRKLPPKRGITQYHQIQ 293

[Close]

BLAST of CsaV3_5G012600 vs. TAIR10
Match: AT2G02180.1 (tobamovirus multiplication protein 3)

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-42
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF AFD+ A+LDVLDHP+LNFIYYLL
Sbjct: 215 RFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIYYLL 274

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYH IR
Sbjct: 275 VEILPSSLVLFILRKLPPKRGITQYHQIR 303

[Close]

BLAST of CsaV3_5G012600 vs. TAIR10
Match: AT4G21790.1 (tobamovirus multiplication 1)

HSP 1 Score: 137.5 bits (345), Expect = 6.8e-33
Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFP+ESKGRRKKL EVG VT ICF+CFL+RC+++  +AFD+   LDVLDHPVLN IYY++
Sbjct: 203 RFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYMV 262

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VE++PS++VLFILRKLPPKR   QYHPI+
Sbjct: 263 VEVLPSALVLFILRKLPPKRVSAQYHPIQ 291

[Close]

BLAST of CsaV3_5G012600 vs. Swiss-Prot
Match: sp|Q402F3|TOM3_TOBAC (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.0e-43
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFL+RC+MMCFNAF++AADLDVLDHP+LN IYYLL
Sbjct: 206 RFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFNAFNKAADLDVLDHPILNLIYYLL 265

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYHPIR
Sbjct: 266 VEILPSSLVLFILRKLPPKRGITQYHPIR 294

[Close]

BLAST of CsaV3_5G012600 vs. Swiss-Prot
Match: sp|Q948R8|THH1_ARATH (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.7e-42
Identity = 80/89 (89.89%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF+AFD AADLDVLDHP+LNFIYYLL
Sbjct: 205 RFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIYYLL 264

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYH I+
Sbjct: 265 VEILPSSLVLFILRKLPPKRGITQYHQIQ 293

[Close]

BLAST of CsaV3_5G012600 vs. Swiss-Prot
Match: sp|Q9ZUM2|TOM3_ARATH (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 3.8e-41
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF AFD+ A+LDVLDHP+LNFIYYLL
Sbjct: 215 RFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIYYLL 274

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYH IR
Sbjct: 275 VEILPSSLVLFILRKLPPKRGITQYHQIR 303

[Close]

BLAST of CsaV3_5G012600 vs. Swiss-Prot
Match: sp|Q9FEG2|TOM1_ARATH (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFP+ESKGRRKKL EVG VT ICF+CFL+RC+++  +AFD+   LDVLDHPVLN IYY++
Sbjct: 203 RFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYMV 262

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VE++PS++VLFILRKLPPKR   QYHPI+
Sbjct: 263 VEVLPSALVLFILRKLPPKRVSAQYHPIQ 291

[Close]

BLAST of CsaV3_5G012600 vs. Swiss-Prot
Match: sp|Q402F4|TOM1_TOBAC (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-31
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFP+ESKGRRKKL EVG VT ICF+CFL+ C ++  +AFD  A LDVLDHPVLN IYYLL
Sbjct: 200 RFPIESKGRRKKLHEVGSVTAICFTCFLISCFVVVLSAFDPDASLDVLDHPVLNLIYYLL 259

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPI 151
           VEI+PS++VL+ILRKLPPKR   QYHPI
Sbjct: 260 VEILPSALVLYILRKLPPKRVSAQYHPI 287

[Close]

BLAST of CsaV3_5G012600 vs. TrEMBL
Match: tr|Q402E9|Q402E9_CUCME (Tobamovirus multiplication 1 homolog OS=Cucumis melo OX=3656 GN=CmTH1 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL
Sbjct: 204 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 263

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEIVPSSMVLFILRKLPPKRGITQYHPIR
Sbjct: 264 VEIVPSSMVLFILRKLPPKRGITQYHPIR 292

[Close]

BLAST of CsaV3_5G012600 vs. TrEMBL
Match: tr|A0A0A0KMG2|A0A0A0KMG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264280 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL
Sbjct: 204 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 263

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEIVPSSMVLFILRKLPPKRGITQYHPIR
Sbjct: 264 VEIVPSSMVLFILRKLPPKRGITQYHPIR 292

[Close]

BLAST of CsaV3_5G012600 vs. TrEMBL
Match: tr|B9HVM5|B9HVM5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G097900v3 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.4e-42
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFD+AADLDVLDHPVLNFIYYLL
Sbjct: 205 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDKAADLDVLDHPVLNFIYYLL 264

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYHPIR
Sbjct: 265 VEILPSSLVLFILRKLPPKRGITQYHPIR 293

[Close]

BLAST of CsaV3_5G012600 vs. TrEMBL
Match: tr|A0A1X9IWF1|A0A1X9IWF1_POPTO (Tobamovirus multiplication protein 3 OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.4e-42
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFD+AADLDVLDHPVLNFIYYLL
Sbjct: 205 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDKAADLDVLDHPVLNFIYYLL 264

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYHPIR
Sbjct: 265 VEILPSSLVLFILRKLPPKRGITQYHPIR 293

[Close]

BLAST of CsaV3_5G012600 vs. TrEMBL
Match: tr|A0A1J7ISC9|A0A1J7ISC9_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_01185 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.7e-42
Identity = 84/89 (94.38%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 63  RFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIYYLL 122
           RFPVESKGRRKKLQEVGYVTTICFSCFLVRC+MMCFNAFD+AADLDVLDHP+LNFIYYLL
Sbjct: 207 RFPVESKGRRKKLQEVGYVTTICFSCFLVRCVMMCFNAFDKAADLDVLDHPILNFIYYLL 266

Query: 123 VEIVPSSMVLFILRKLPPKRGITQYHPIR 152
           VEI+PSS+VLFILRKLPPKRGITQYHPIR
Sbjct: 267 VEILPSSLVLFILRKLPPKRGITQYHPIR 295

The following BLAST results are available for this feature:

BLAST of CsaV3_5G012600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140406.1	3.5e-43	100.00	PREDICTED: protein TOM THREE HOMOLOG 1 isoform X1 [Cucumis sativus] >KGN50793.1 ...	[more]
NP_001284434.1	3.5e-43	100.00	protein TOM THREE HOMOLOG 1 [Cucumis melo] >BAE43841.1 tobamovirus multiplicatio...	[more]
XP_022977192.1	1.7e-42	97.75	protein TOM THREE HOMOLOG 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023539850.1	1.7e-42	97.75	tobamovirus multiplication protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942344.1	3.9e-42	95.51	protein TOM THREE HOMOLOG 1 [Cucurbita moschata]	[more]

BLAST of CsaV3_5G012600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14530.1	4.3e-43	89.89	Protein of unknown function (DUF1084)	[more]
AT2G02180.1	2.1e-42	88.76	tobamovirus multiplication protein 3	[more]
AT4G21790.1	6.8e-33	69.66	tobamovirus multiplication 1	[more]

BLAST of CsaV3_5G012600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q402F3\|TOM3_TOBAC	7.0e-43	91.01	Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 S...	[more]
sp\|Q948R8\|THH1_ARATH	7.7e-42	89.89	Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1	[more]
sp\|Q9ZUM2\|TOM3_ARATH	3.8e-41	88.76	Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=...	[more]
sp\|Q9FEG2\|TOM1_ARATH	1.2e-31	69.66	Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=...	[more]
sp\|Q402F4\|TOM1_TOBAC	3.6e-31	72.73	Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 S...	[more]

BLAST of CsaV3_5G012600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q402E9\|Q402E9_CUCME	2.3e-43	100.00	Tobamovirus multiplication 1 homolog OS=Cucumis melo OX=3656 GN=CmTH1 PE=2 SV=1	[more]
tr\|A0A0A0KMG2\|A0A0A0KMG2_CUCSA	2.3e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264280 PE=4 SV=1	[more]
tr\|B9HVM5\|B9HVM5_POPTR	3.4e-42	96.63	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G097900v3 PE=...	[more]
tr\|A0A1X9IWF1\|A0A1X9IWF1_POPTO	3.4e-42	96.63	Tobamovirus multiplication protein 3 OS=Populus tomentosa OX=118781 PE=2 SV=1	[more]
tr\|A0A1J7ISC9\|A0A1J7ISC9_LUPAN	5.7e-42	94.38	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_01185 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009457	DUF1084

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009705	plant-type vacuole membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G012600.1	CsaV3_5G012600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009457	Domain of unknown function DUF1084	PFAM	PF06454	DUF1084	coord: 61..151 e-value: 2.2E-48 score: 164.9
None	No IPR available	PANTHER	PTHR31142:SF3	PROTEIN TOM THREE HOMOLOG 1-RELATED	coord: 61..151
None	No IPR available	PANTHER	PTHR31142	FAMILY NOT NAMED	coord: 61..151

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G012600	CSPI05G11990	Wild cucumber (PI 183967)	cpicucB300
CsaV3_5G012600	Cucsa.229230	Cucumber (Gy14) v1	cgycucB346
CsaV3_5G012600	CmaCh04G000030	Cucurbita maxima (Rimu)	cmacucB0876
CsaV3_5G012600	CmoCh04G010530	Cucurbita moschata (Rifu)	cmocucB0866
CsaV3_5G012600	CmoCh04G000050	Cucurbita moschata (Rifu)	cmocucB0893
CsaV3_5G012600	Cp4.1LG01g06630	Cucurbita pepo (Zucchini)	cpecucB0561
CsaV3_5G012600	Cp4.1LG01g07710	Cucurbita pepo (Zucchini)	cpecucB0531
CsaV3_5G012600	CsGy5G009500	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G012600	Carg00093	Silver-seed gourd	carcucB0706
CsaV3_5G012600	Cla016915	Watermelon (97103) v1	cucwmB463
CsaV3_5G012600	MELO3C022598	Melon (DHL92) v3.5.1	cucmeB372
CsaV3_5G012600	ClCG11G000820	Watermelon (Charleston Gray)	cucwcgB377
CsaV3_5G012600	MELO3C022598.2	Melon (DHL92) v3.6.1	cucmedB363
CsaV3_5G012600	Cla97C11G207180	Watermelon (97103) v2	cucwmbB375
CsaV3_5G012600	Bhi07G000078	Wax gourd	cucwgoB521

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G012600	Silver-seed gourd	carcucB0773
CsaV3_5G012600	Cucurbita maxima (Rimu)	cmacucB0881
CsaV3_5G012600	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G012600	Bottle gourd (USVL1VR-Ls)	cuclsiB363
CsaV3_5G012600	Melon (DHL92) v3.5.1	cucmeB379
CsaV3_5G012600	Melon (DHL92) v3.6.1	cucmedB371
CsaV3_5G012600	Watermelon (97103) v2	cucwmbB376