CsaV3_4G034770 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G034770
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 24595910 .. 24596881 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTAGCTTTCACGAGTCTTTGAAAATCCTTAAAATATTAAACATCAGCAGAGTCAAATAATCACACGTAATTGGTATTTAACCACCGTTCCCATTCTTCACAATCCAAAATTAAGCTCATCCTTCACCCTATATATACACCAAATTATTCCTCATTCTCCTACTCAGAATCACCAAACTCAGCACCTCAACGGCAACCTGAAGAATAAGCAAAAGGGAGATCAATGGCAATGAAATTAAGCACTAAAAGTATCTGTTTTGTTGTGGGTGTTCTGTTAATGATGGCTTCCACCCATTTTCTAATTGTTGAAGGCAGAGTTTTGAGATCAGAAGAAGAGAAGTTAGCTGATATGAAGGAGAGAATGGAAGGTGTGAAGCCAATTGTACTCGTGGACGAAGCTAATTCATTAAGTAGCAGTAGTCGCAGTTCGTTTAGGAGTTTGAGTTTCGTGTTGGCGTCTGGGCCCAGTAAAAAGGGACCTGGGCATTAACCATTTTTGCCAATTTCTTCTTCATTCTATTGTTATTGTATACTGATTCTGCACAAAATTAGAGGCTTTTTGTATTAGTTCTAGCGAGGGAAGTTTTGTTTTGTTTCTTCATTGATTTAAATAACAGAGTTTCATGATGAAGAGCAACGTTAAATTCTCATTACAAAGCAAGGGAATGGAAGAAAAGCGAGGAATTTGGGGGAATATGTTTCTGTTCTTGGTAAAAGACAGATGGTTGATATGAAAACAAAGTGAAAGGGATTGGGGAAATCGAGGATTTGTCTGACCAATTCTTCGTTTATATTTGCAATTTGAGATGCATTAATACTTGGGAATCCCCTGTTTTGTGGACTTAGTGTTTGATGACTTCAAATTTAGAATCTTTATTTTTTAAACCTTCATTTCTTTTTATATTTTTAAATTTTTCATAAACTAAAATTTATAGTACACTGTATTCAAATCTAATGAAATGTAAAGATCG

mRNA sequence

ATGGCAATGAAATTAAGCACTAAAAGTATCTGTTTTGTTGTGGGTGTTCTGTTAATGATGGCTTCCACCCATTTTCTAATTGTTGAAGGCAGAGTTTTGAGATCAGAAGAAGAGAAGTTAGCTGATATGAAGGAGAGAATGGAAGGTGTGAAGCCAATTGTACTCGTGGACGAAGCTAATTCATTAAGTAGCAGTAGTCGCAGTTCGTTTAGGAGTTTGAGTTTCGTGTTGGCGTCTGGGCCCAGTAAAAAGGGACCTGGGCATTAA

Coding sequence (CDS)

ATGGCAATGAAATTAAGCACTAAAAGTATCTGTTTTGTTGTGGGTGTTCTGTTAATGATGGCTTCCACCCATTTTCTAATTGTTGAAGGCAGAGTTTTGAGATCAGAAGAAGAGAAGTTAGCTGATATGAAGGAGAGAATGGAAGGTGTGAAGCCAATTGTACTCGTGGACGAAGCTAATTCATTAAGTAGCAGTAGTCGCAGTTCGTTTAGGAGTTTGAGTTTCGTGTTGGCGTCTGGGCCCAGTAAAAAGGGACCTGGGCATTAA

Protein sequence

MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEANSLSSSSRSSFRSLSFVLASGPSKKGPGH
BLAST of CsaV3_4G034770 vs. NCBI nr
Match: KGN55240.1 (hypothetical protein Csa_4G641720 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 6.4e-37
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEAN 60
          MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEAN
Sbjct: 1  MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEAN 60

Query: 61 SLSSSSRSSFRSLSFVLASGPSKKGPGH 89
          SLSSSSRSSFRSLSFVLASGPSKKGPGH
Sbjct: 61 SLSSSSRSSFRSLSFVLASGPSKKGPGH 88

BLAST of CsaV3_4G034770 vs. NCBI nr
Match: PPR98333.1 (hypothetical protein GOBAR_AA22335 [Gossypium barbadense])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLI-VEGRVLRSEEEKLADMKER--MEGVKPIVLVDEANSL 65
          S + + F++GVL ++ ST  +I V GR LRS    +   +E+    GV     +  AN  
Sbjct: 8  SMQRLVFMMGVLALLVSTELVIAVHGRTLRSTTMVVGGCEEQAGRMGVLSFGALSAANH- 67

Query: 66 SSSSRSSFRSLSFVLASGPSKKGPGH 89
          SS+SR+SFRSL F LASGPSK+GPGH
Sbjct: 68 SSNSRNSFRSLGFRLASGPSKRGPGH 92

BLAST of CsaV3_4G034770 vs. NCBI nr
Match: XP_022752498.1 (uncharacterized protein LOC111301232 [Durio zibethinus])

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLIVEGRVLRS---EEEKLADMKERMEGVKPIVLVDEANSL 65
          S K I FV+G+L ++ ST F  V GR LRS   +   +   +E   G     +   + + 
Sbjct: 13 SMKRIVFVLGLLALLVSTEFAAVHGRALRSTTTDNVVVNPGREEQGGPDNEAIGVSSFAN 72

Query: 66 SSSSRSSFRSLSFVLASGPSKKGPGH 89
          +SS+R SFRSL++ LASGP+ KGPGH
Sbjct: 73 NSSNRKSFRSLAYKLASGPNTKGPGH 98

BLAST of CsaV3_4G034770 vs. NCBI nr
Match: EOY15813.1 (Uncharacterized protein TCM_034774 [Theobroma cacao])

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMK-ERMEGVKPIVLVD--EANSL 65
          S K   FV+G+L ++ ST F  V+GR LRS+   +     E   G    V V     ++ 
Sbjct: 11 SMKRHLFVLGLLALLVSTEFTAVDGRALRSKTNNVVVAGCEEQGGADEQVAVSTFAVSAN 70

Query: 66 SSSSRSSFRSLSFVLASGPSKKGPGH 89
          +SSSR S RSL+  LASGPSK+GPGH
Sbjct: 71 NSSSRPSVRSLASRLASGPSKRGPGH 96

BLAST of CsaV3_4G034770 vs. NCBI nr
Match: XP_019071956.1 (PREDICTED: uncharacterized protein LOC109121646 [Vitis vinifera])

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-04
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEANSLSSS 65
          S KS+ FV+ VL+++ ST    V  R LRS  +  A    + +    +      +S +SS
Sbjct: 11 SVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFAVSSNNSS 70

Query: 66 SRSSFRSLSFVLASGPSKKGPGH 89
           RSS RSL++ LASGPSK+GPGH
Sbjct: 71 KRSSVRSLTYKLASGPSKRGPGH 93

BLAST of CsaV3_4G034770 vs. TrEMBL
Match: tr|A0A0A0KZV6|A0A0A0KZV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-37
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEAN 60
          MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEAN
Sbjct: 1  MAMKLSTKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEAN 60

Query: 61 SLSSSSRSSFRSLSFVLASGPSKKGPGH 89
          SLSSSSRSSFRSLSFVLASGPSKKGPGH
Sbjct: 61 SLSSSSRSSFRSLSFVLASGPSKKGPGH 88

BLAST of CsaV3_4G034770 vs. TrEMBL
Match: tr|A0A2P5X4R0|A0A2P5X4R0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22335 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLI-VEGRVLRSEEEKLADMKER--MEGVKPIVLVDEANSL 65
          S + + F++GVL ++ ST  +I V GR LRS    +   +E+    GV     +  AN  
Sbjct: 8  SMQRLVFMMGVLALLVSTELVIAVHGRTLRSTTMVVGGCEEQAGRMGVLSFGALSAANH- 67

Query: 66 SSSSRSSFRSLSFVLASGPSKKGPGH 89
          SS+SR+SFRSL F LASGPSK+GPGH
Sbjct: 68 SSNSRNSFRSLGFRLASGPSKRGPGH 92

BLAST of CsaV3_4G034770 vs. TrEMBL
Match: tr|A0A061FFY1|A0A061FFY1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034774 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-04
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMK-ERMEGVKPIVLVD--EANSL 65
          S K   FV+G+L ++ ST F  V+GR LRS+   +     E   G    V V     ++ 
Sbjct: 11 SMKRHLFVLGLLALLVSTEFTAVDGRALRSKTNNVVVAGCEEQGGADEQVAVSTFAVSAN 70

Query: 66 SSSSRSSFRSLSFVLASGPSKKGPGH 89
          +SSSR S RSL+  LASGPSK+GPGH
Sbjct: 71 NSSSRPSVRSLASRLASGPSKRGPGH 96

BLAST of CsaV3_4G034770 vs. TrEMBL
Match: tr|F6GZW6|F6GZW6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09680 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-04
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEANSLSSS 65
          S KS+ FV+ VL+++ ST    V  R LRS  +  A    + +    +      +S +SS
Sbjct: 11 SVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFAVSSNNSS 70

Query: 66 SRSSFRSLSFVLASGPSKKGPGH 89
           RSS RSL++ LASGPSK+GPGH
Sbjct: 71 KRSSVRSLTYKLASGPSKRGPGH 93

BLAST of CsaV3_4G034770 vs. TrEMBL
Match: tr|A0A0D2NMN1|A0A0D2NMN1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G133400 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.2e-04
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 6  STKSICFVVGVLLMMASTHFLI-VEGRVLRSEEEKLADMKERMEGVKPIVLVDEANSLSS 65
          S + +  ++GVL ++ ST   I V GR LRS    +   +E+   +        A   SS
Sbjct: 11 SMQRLVLMMGVLALLVSTELAIAVHGRTLRSTTMVVGGCEEQGGRMGVSFGALSAADHSS 70

Query: 66 SSRSSFRSLSFVLASGPSKKGPGH 89
          +SR+SFRSL F LASGPSK+GPGH
Sbjct: 71 NSRNSFRSLGFRLASGPSKRGPGH 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55240.16.4e-37100.00hypothetical protein Csa_4G641720 [Cucumis sativus][more]
PPR98333.12.2e-0546.51hypothetical protein GOBAR_AA22335 [Gossypium barbadense][more]
XP_022752498.16.5e-0541.86uncharacterized protein LOC111301232 [Durio zibethinus][more]
EOY15813.12.5e-0444.19Uncharacterized protein TCM_034774 [Theobroma cacao][more]
XP_019071956.14.2e-0442.17PREDICTED: uncharacterized protein LOC109121646 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KZV6|A0A0A0KZV6_CUCSA4.2e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1[more]
tr|A0A2P5X4R0|A0A2P5X4R0_GOSBA1.5e-0546.51Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22335 PE=4 SV... [more]
tr|A0A061FFY1|A0A061FFY1_THECC1.6e-0444.19Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034774 PE=4 SV=1[more]
tr|F6GZW6|F6GZW6_VITVI2.8e-0442.17Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09680 PE=4 SV=... [more]
tr|A0A0D2NMN1|A0A0D2NMN1_GOSRA6.2e-0442.86Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G133400 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G034770.1CsaV3_4G034770.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G034770Wax gourdcucwgoB390
CsaV3_4G034770Cucumber (Chinese Long) v3cuccucB081
CsaV3_4G034770Cucumber (Chinese Long) v3cuccucB178
CsaV3_4G034770Cucumber (Chinese Long) v3cuccucB188
CsaV3_4G034770Silver-seed gourdcarcucB0211
CsaV3_4G034770Silver-seed gourdcarcucB0441
CsaV3_4G034770Silver-seed gourdcarcucB0810
CsaV3_4G034770Cucumber (Gy14) v2cgybcucB081
CsaV3_4G034770Cucumber (Gy14) v2cgybcucB171
CsaV3_4G034770Cucumber (Gy14) v2cgybcucB339
CsaV3_4G034770Cucumber (Gy14) v1cgycucB340
CsaV3_4G034770Cucumber (Gy14) v1cgycucB536
CsaV3_4G034770Cucumber (Gy14) v1cgycucB597
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB0153
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB0215
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB0397
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB0854
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB0627
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB0800
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB0945
CsaV3_4G034770Cucurbita maxima (Rimu)cmacucB1022
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0136
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0200
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0391
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0551
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0611
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0785
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0839
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB0933
CsaV3_4G034770Cucurbita moschata (Rifu)cmocucB1006
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0127
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0269
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0311
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0511
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0602
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0701
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0714
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB0847
CsaV3_4G034770Cucurbita pepo (Zucchini)cpecucB1024
CsaV3_4G034770Wild cucumber (PI 183967)cpicucB103
CsaV3_4G034770Wild cucumber (PI 183967)cpicucB405
CsaV3_4G034770Bottle gourd (USVL1VR-Ls)cuclsiB300
CsaV3_4G034770Bottle gourd (USVL1VR-Ls)cuclsiB336
CsaV3_4G034770Melon (DHL92) v3.5.1cucmeB276
CsaV3_4G034770Melon (DHL92) v3.5.1cucmeB287
CsaV3_4G034770Melon (DHL92) v3.5.1cucmeB316
CsaV3_4G034770Melon (DHL92) v3.6.1cucmedB269
CsaV3_4G034770Melon (DHL92) v3.6.1cucmedB280
CsaV3_4G034770Melon (DHL92) v3.6.1cucmedB308
CsaV3_4G034770Watermelon (Charleston Gray)cucwcgB350
CsaV3_4G034770Watermelon (97103) v1cucwmB310
CsaV3_4G034770Watermelon (97103) v2cucwmbB266
CsaV3_4G034770Watermelon (97103) v2cucwmbB336