Cp4.1LG06g01890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g01890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 989414 .. 990611 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGAAATGAGCGCCACAGCATCAGGCAAGCGTGTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCGTCGGCCCATTTCCTAACGGTTGAGGGCAGAACCTTGAGATCAGTTTCAGAGAAGTTAGCTGATGGGAAGGAGAAAATGGGAGGTGTGGAGGCAATTGGAGTGGCAGCTTTTAGGGACCAAGTTAATTCATTAAGTAGCAGCAGTCACAGTGAATTTAGGAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAAGGTCCCGGGCACTGACCGTTTTTGCCTTTTCTTCTTCTTCTTGTTCTTCATTGTTTTGTACAATTATACACAAAATTGAAACTTTTATACCAGTTTTAGCGAGGGAGATCTTGTTTTTGCATTTATTCGTATCACAGAGTTGGGGTCATGAATAACGTAAGTTTCAATTATTTTGTTTTCTTGTACCAAAAACATAGATCACGATCACGATTCCAATCGCATCAGACAAACGGACAAAGCTTTAAATTTGACCATTGGAATTGGACAGCGAAGAGTAGAAGAAATGGAGGAAGATTGGATTAGATTAGGGCTGAAATGGATGGATGCGGCGCCCTCCTGGATGGAGGCCTAGAAAGAAGATCCTTGCTTTGCTTCAACATGGAAACAAAGTGGAAATCGAGATTTTGTTTGACCACTTTTTATTGGTTTTGTTTATATTTGTATTTGGGTTTAGTTAATTAACATTGGAATTGGAATCCCGTGTTTTGTGTGTTAGTGTTTGATGACTTAAGATTAAAAGCATCACTTCTTTTGTTGTTAGTTTCGTATGTGCTTACATGAGCATTTGATTTGAATAAGATTCCTTCTTCTTTGTAGTTTTCTCAAGCTAAACAGCCTTTCCTTGCAATCACAGCAGCGTTTCCAAAATGGTTTCAGCACACAACTTTACCCATGGATTGGATTCAATCCATGAATGTTTTGCCTTTTACCTTCTATTTCAAATGCCCAAGATGGGGGAATGGAGGCATGTTCTTGAATGCTTTTCGAGATTTGTATAGGAAATATGAGCACCACGCAGACAAGGCGAGACAGTGAACCGGTGCTTACAATTCTGGAAGCACAGTTGCCTACGACCGTGGTGATCAAATTCGTTGCCGAACACTCATCTCTATACGCCAGACGGCTCACACAGAAACATCCATAA

mRNA sequence

ATGGCAATGGAAATGAGCGCCACAGCATCAGGCAAGCGTGTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCGTCGGCCCATTTCCTAACGGTTGAGGGCAGAACCTTGAGATCAGTTTCAGAGAAGTTAGCTGATGGGAAGGAGAAAATGGGAGGTGTGGAGGCAATTGGAGTGGCAGCTTTTAGGGACCAAGTTAATTCATTAAGTAGCAGCAGTCACAGTGAATTTAGGAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAAGGAAATATGAGCACCACGCAGACAAGGCGAGACAGTGAACCGGTGCTTACAATTCTGGAAGCACAGTTGCCTACGACCGTGGTGATCAAATTCGTTGCCGAACACTCATCTCTATACGCCAGACGGCTCACACAGAAACATCCATAA

Coding sequence (CDS)

ATGGCAATGGAAATGAGCGCCACAGCATCAGGCAAGCGTGTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCGTCGGCCCATTTCCTAACGGTTGAGGGCAGAACCTTGAGATCAGTTTCAGAGAAGTTAGCTGATGGGAAGGAGAAAATGGGAGGTGTGGAGGCAATTGGAGTGGCAGCTTTTAGGGACCAAGTTAATTCATTAAGTAGCAGCAGTCACAGTGAATTTAGGAGCTTGAGTTTCGTGTTGGCGTCTGGGCCTAGTAAAAAAGGAAATATGAGCACCACGCAGACAAGGCGAGACAGTGAACCGGTGCTTACAATTCTGGAAGCACAGTTGCCTACGACCGTGGTGATCAAATTCGTTGCCGAACACTCATCTCTATACGCCAGACGGCTCACACAGAAACATCCATAA

Protein sequence

MAMEMSATASGKRVCFVVGVLLMVASAHFLTVEGRTLRSVSEKLADGKEKMGGVEAIGVAAFRDQVNSLSSSSHSEFRSLSFVLASGPSKKGNMSTTQTRRDSEPVLTILEAQLPTTVVIKFVAEHSSLYARRLTQKHP
Homology
[Close]
BLAST of Cp4.1LG06g01890 vs. TrEMBL
Match: A0A0A0KZV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-19
Identity = 62/92 (67.39%), Postives = 70/92 (76.09%), Query Frame = 1 

Query: 1  MAMEMSATASGKRVCFVVGVLLMVASAHFLTVEGRTLRSVSEKLADGKEKMGGVEAIGVA 60
          MAM++S     K +CFVVGVLLM+AS HFL VEGR LRS  EKLAD KE+M GV+ I + 
Sbjct: 1  MAMKLST----KSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 AFRDQVNSLSSSSHSEFRSLSFVLASGPSKKG 93
             D+ NSLSSSS S FRSLSFVLASGPSKKG
Sbjct: 61 ---DEANSLSSSSRSSFRSLSFVLASGPSKKG 85

[Close]
BLAST of Cp4.1LG06g01890 vs. NCBI nr
Match: gi|700200082|gb|KGN55240.1| (hypothetical protein Csa_4G641720 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 62/92 (67.39%), Postives = 70/92 (76.09%), Query Frame = 1 

Query: 1  MAMEMSATASGKRVCFVVGVLLMVASAHFLTVEGRTLRSVSEKLADGKEKMGGVEAIGVA 60
          MAM++S     K +CFVVGVLLM+AS HFL VEGR LRS  EKLAD KE+M GV+ I + 
Sbjct: 1  MAMKLST----KSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 AFRDQVNSLSSSSHSEFRSLSFVLASGPSKKG 93
             D+ NSLSSSS S FRSLSFVLASGPSKKG
Sbjct: 61 ---DEANSLSSSSRSSFRSLSFVLASGPSKKG 85

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g01890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g01890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZV6_CUCSA2.0e-1967.39Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1[more]
BLAST of Cp4.1LG06g01890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g01890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200082|gb|KGN55240.1|2.8e-1967.39hypothetical protein Csa_4G641720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01890.1Cp4.1LG06g01890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g01890CmaCh09G002650Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g01890CmoCh09G002590Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g01890Cla020629Watermelon (97103) v1cpewmB765
Cp4.1LG06g01890Csa4G641720Cucumber (Chinese Long) v2cpecuB782
Cp4.1LG06g01890ClCG05G020290Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g01890CSPI04G24530Wild cucumber (PI 183967)cpecpiB784
Cp4.1LG06g01890Lsi04G015130Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g01890CsaV3_4G034770Cucumber (Chinese Long) v3cpecucB0969
Cp4.1LG06g01890Bhi09G002689Wax gourdcpewgoB0997
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g01890Cp4.1LG02g06620Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g01890Cucumber (Chinese Long) v3cpecucB0957
Cp4.1LG06g01890Cucumber (Chinese Long) v3cpecucB0982
Cp4.1LG06g01890Wax gourdcpewgoB0976
Cp4.1LG06g01890Cucurbita pepo (Zucchini)cpecpeB099
Cp4.1LG06g01890Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g01890Cucurbita pepo (Zucchini)cpecpeB282
Cp4.1LG06g01890Cucurbita pepo (Zucchini)cpecpeB422
Cp4.1LG06g01890Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG06g01890Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g01890Cucumber (Gy14) v1cgycpeB0603
Cp4.1LG06g01890Cucumber (Gy14) v1cgycpeB0923
Cp4.1LG06g01890Cucumber (Gy14) v1cgycpeB1044
Cp4.1LG06g01890Cucurbita maxima (Rimu)cmacpeB160
Cp4.1LG06g01890Cucurbita maxima (Rimu)cmacpeB199
Cp4.1LG06g01890Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g01890Cucurbita maxima (Rimu)cmacpeB684
Cp4.1LG06g01890Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g01890Cucurbita maxima (Rimu)cmacpeB888
Cp4.1LG06g01890Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g01890Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g01890Cucurbita moschata (Rifu)cmocpeB637
Cp4.1LG06g01890Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g01890Cucurbita moschata (Rifu)cmocpeB827
Cp4.1LG06g01890Wild cucumber (PI 183967)cpecpiB773
Cp4.1LG06g01890Cucumber (Chinese Long) v2cpecuB771
Cp4.1LG06g01890Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g01890Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g01890Watermelon (97103) v1cpewmB756
Cp4.1LG06g01890Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g01890Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g01890Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g01890Cucumber (Gy14) v2cgybcpeB562
Cp4.1LG06g01890Cucumber (Gy14) v2cgybcpeB868
Cp4.1LG06g01890Cucumber (Gy14) v2cgybcpeB986
Cp4.1LG06g01890Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g01890Melon (DHL92) v3.6.1cpemedB867
Cp4.1LG06g01890Melon (DHL92) v3.6.1cpemedB873
Cp4.1LG06g01890Silver-seed gourdcarcpeB0267
Cp4.1LG06g01890Silver-seed gourdcarcpeB0570
Cp4.1LG06g01890Silver-seed gourdcarcpeB1083