Cp4.1LG02g06620 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g06620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 1052617 .. 1052880 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGACGTCTCTGTTTCGTTGTGGGTGTTCTGTTAATGGTGGTTTCGACCCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCAGTGGTGGAGCCAATTGGAATGGTAGCTTACATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTAGCAGCTTGAGCTTCGTGCTGTCGTCTGGGCCTAGTAAAAAAGGTCCCGGACATTGA

mRNA sequence

ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGACGTCTCTGTTTCGTTGTGGGTGTTCTGTTAATGGTGGTTTCGACCCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCAGTGGTGGAGCCAATTGGAATGGTAGCTTACATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTAGCAGCTTGAGCTTCGTGCTGTCGTCTGGGCCTAGTAAAAAAGGTCCCGGACATTGA

Coding sequence (CDS)

ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGACGTCTCTGTTTCGTTGTGGGTGTTCTGTTAATGGTGGTTTCGACCCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCAGTGGTGGAGCCAATTGGAATGGTAGCTTACATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTAGCAGCTTGAGCTTCGTGCTGTCGTCTGGGCCTAGTAAAAAAGGTCCCGGACATTGA

Protein sequence

MAMELRGTASGRRLCFVVGVLLMVVSTQFVSVEGRVLKGVADEAVVEPIGMVAYMATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH
Homology
[Close]
BLAST of Cp4.1LG02g06620 vs. TrEMBL
Match: A0A0A0KZV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.5e-12
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1 

Query: 1  MAMELRGTASGRRLCFVVGVLLMVVSTQFVSVEGRVLKGVADEAV-----VEPIGMVAYM 60
          MAM+L    S + +CFVVGVLLM+ ST F+ VEGRVL+   ++       +E +  +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH 88
             +SLS SSRS+F SLSFVL+SGPSKKGPGH
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

[Close]
BLAST of Cp4.1LG02g06620 vs. NCBI nr
Match: gi|700200082|gb|KGN55240.1| (hypothetical protein Csa_4G641720 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1 

Query: 1  MAMELRGTASGRRLCFVVGVLLMVVSTQFVSVEGRVLKGVADEAV-----VEPIGMVAYM 60
          MAM+L    S + +CFVVGVLLM+ ST F+ VEGRVL+   ++       +E +  +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH 88
             +SLS SSRS+F SLSFVL+SGPSKKGPGH
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g06620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g06620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZV6_CUCSA9.5e-1252.17Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1[more]
BLAST of Cp4.1LG02g06620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g06620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200082|gb|KGN55240.1|1.4e-1152.17hypothetical protein Csa_4G641720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g06620.1Cp4.1LG02g06620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g06620Cla020629Watermelon (97103) v1cpewmB559
Cp4.1LG02g06620ClCG05G020290Watermelon (Charleston Gray)cpewcgB509
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g06620Cp4.1LG06g01890Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g06620Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g06620Cucurbita pepo (Zucchini)cpecpeB264
Cp4.1LG02g06620Cucurbita pepo (Zucchini)cpecpeB414
Cp4.1LG02g06620Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g06620Cucumber (Gy14) v1cgycpeB0921
Cp4.1LG02g06620Cucumber (Gy14) v1cgycpeB1043
Cp4.1LG02g06620Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g06620Cucurbita maxima (Rimu)cmacpeB192
Cp4.1LG02g06620Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g06620Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g06620Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g06620Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g06620Cucurbita moschata (Rifu)cmocpeB450
Cp4.1LG02g06620Cucurbita moschata (Rifu)cmocpeB633
Cp4.1LG02g06620Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g06620Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g06620Wild cucumber (PI 183967)cpecpiB566
Cp4.1LG02g06620Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g06620Cucumber (Chinese Long) v2cpecuB564
Cp4.1LG02g06620Cucumber (Chinese Long) v2cpecuB583
Cp4.1LG02g06620Bottle gourd (USVL1VR-Ls)cpelsiB454
Cp4.1LG02g06620Bottle gourd (USVL1VR-Ls)cpelsiB462
Cp4.1LG02g06620Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g06620Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g06620Watermelon (97103) v1cpewmB541
Cp4.1LG02g06620Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g06620Melon (DHL92) v3.5.1cpemeB538
Cp4.1LG02g06620Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g06620Cucumber (Gy14) v2cgybcpeB539
Cp4.1LG02g06620Cucumber (Gy14) v2cgybcpeB955
Cp4.1LG02g06620Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g06620Melon (DHL92) v3.6.1cpemedB638
Cp4.1LG02g06620Melon (DHL92) v3.6.1cpemedB648
Cp4.1LG02g06620Silver-seed gourdcarcpeB0265
Cp4.1LG02g06620Silver-seed gourdcarcpeB0447
Cp4.1LG02g06620Silver-seed gourdcarcpeB0567
Cp4.1LG02g06620Silver-seed gourdcarcpeB1082
Cp4.1LG02g06620Cucumber (Chinese Long) v3cpecucB0675
Cp4.1LG02g06620Cucumber (Chinese Long) v3cpecucB0701
Cp4.1LG02g06620Cucumber (Chinese Long) v3cpecucB0722
Cp4.1LG02g06620Cucumber (Chinese Long) v3cpecucB0736
Cp4.1LG02g06620Wax gourdcpewgoB0684
Cp4.1LG02g06620Wax gourdcpewgoB0725