CmaCh01G018070 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G018070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr01 : 12032683 .. 12032946 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGAATTGAGGGGCACAGCATCAGCCAGACGTCTCTGTTTCGTTGTGGGTGTTCTGTTAATGGTGGTTTGGACGCAATTTGCAAGTGTTGAAGGAAGGGTTCTAAAAGGAGTTGCAGATAAAGCGGTGGTGGAGCCAATTGGAATGGTAGCTTATATGGCTACACTTGATTCCTTAAGTGGCAGTAGTCGCAGTGCATTTAGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTAGCAAAAAAGGTCCCGGACATTGA

mRNA sequence

ATGGCAATGGAATTGAGGGGCACAGCATCAGCCAGACGTCTCTGTTTCGTTGTGGGTGTTCTGTTAATGGTGGTTTGGACGCAATTTGCAAGTGTTGAAGGAAGGGTTCTAAAAGGAGTTGCAGATAAAGCGGTGGTGGAGCCAATTGGAATGGTAGCTTATATGGCTACACTTGATTCCTTAAGTGGCAGTAGTCGCAGTGCATTTAGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTAGCAAAAAAGGTCCCGGACATTGA

Coding sequence (CDS)

ATGGCAATGGAATTGAGGGGCACAGCATCAGCCAGACGTCTCTGTTTCGTTGTGGGTGTTCTGTTAATGGTGGTTTGGACGCAATTTGCAAGTGTTGAAGGAAGGGTTCTAAAAGGAGTTGCAGATAAAGCGGTGGTGGAGCCAATTGGAATGGTAGCTTATATGGCTACACTTGATTCCTTAAGTGGCAGTAGTCGCAGTGCATTTAGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTAGCAAAAAAGGTCCCGGACATTGA

Protein sequence

MAMELRGTASARRLCFVVGVLLMVVWTQFASVEGRVLKGVADKAVVEPIGMVAYMATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH
Homology
[Close]
BLAST of CmaCh01G018070 vs. TrEMBL
Match: A0A0A0KZV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 1  MAMELRGTASARRLCFVVGVLLMVVWTQFASVEGRVLKGVADKAV-----VEPIGMVAYM 60
          MAM+L    S + +CFVVGVLLM+  T F  VEGRVL+   +K       +E +  +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH 88
             +SLS SSRS+F SLSFVL+SGPSKKGPGH
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

[Close]
BLAST of CmaCh01G018070 vs. NCBI nr
Match: gi|700200082|gb|KGN55240.1| (hypothetical protein Csa_4G641720 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 1  MAMELRGTASARRLCFVVGVLLMVVWTQFASVEGRVLKGVADKAV-----VEPIGMVAYM 60
          MAM+L    S + +CFVVGVLLM+  T F  VEGRVL+   +K       +E +  +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH 88
             +SLS SSRS+F SLSFVL+SGPSKKGPGH
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

The following BLAST results are available for this feature:
BLAST of CmaCh01G018070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh01G018070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZV6_CUCSA2.1e-1152.17Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1[more]
BLAST of CmaCh01G018070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh01G018070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200082|gb|KGN55240.1|3.0e-1152.17hypothetical protein Csa_4G641720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G018070.1CmaCh01G018070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G018070Cla020629Watermelon (97103) v1cmawmB440
CmaCh01G018070ClCG05G020290Watermelon (Charleston Gray)cmawcgB411
CmaCh01G018070CmoCh01G018630Cucurbita moschata (Rifu)cmacmoB469
CmaCh01G018070CmoCh09G002590Cucurbita moschata (Rifu)cmacmoB435
CmaCh01G018070Lsi04G015130Bottle gourd (USVL1VR-Ls)cmalsiB424
CmaCh01G018070CsaV3_4G034770Cucumber (Chinese Long) v3cmacucB0565
CmaCh01G018070Cla97C05G102010Watermelon (97103) v2cmawmbB479
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh01G018070CmaCh09G002650Cucurbita maxima (Rimu)cmacmaB051
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G018070Silver-seed gourdcarcmaB0251
CmaCh01G018070Silver-seed gourdcarcmaB0563
CmaCh01G018070Silver-seed gourdcarcmaB1069
CmaCh01G018070Cucumber (Chinese Long) v3cmacucB0524
CmaCh01G018070Cucumber (Chinese Long) v3cmacucB0584
CmaCh01G018070Cucumber (Chinese Long) v3cmacucB0589
CmaCh01G018070Watermelon (97103) v2cmawmbB442
CmaCh01G018070Watermelon (97103) v2cmawmbB504
CmaCh01G018070Wax gourdcmawgoB0600
CmaCh01G018070Wax gourdcmawgoB0576
CmaCh01G018070Wax gourdcmawgoB0585
CmaCh01G018070Cucurbita maxima (Rimu)cmacmaB182
CmaCh01G018070Cucurbita moschata (Rifu)cmacmoB483
CmaCh01G018070Cucurbita maxima (Rimu)cmacmaB415
CmaCh01G018070Cucurbita maxima (Rimu)cmacmaB421
CmaCh01G018070Cucurbita maxima (Rimu)cmacmaB426
CmaCh01G018070Cucurbita maxima (Rimu)cmacmaB436
CmaCh01G018070Cucumber (Gy14) v1cgycmaB0965
CmaCh01G018070Cucumber (Gy14) v1cgycmaB1091
CmaCh01G018070Cucurbita moschata (Rifu)cmacmoB454
CmaCh01G018070Cucurbita moschata (Rifu)cmacmoB478
CmaCh01G018070Wild cucumber (PI 183967)cmacpiB439
CmaCh01G018070Wild cucumber (PI 183967)cmacpiB476
CmaCh01G018070Cucumber (Chinese Long) v2cmacuB437
CmaCh01G018070Cucumber (Chinese Long) v2cmacuB473
CmaCh01G018070Melon (DHL92) v3.5.1cmameB412
CmaCh01G018070Melon (DHL92) v3.5.1cmameB432
CmaCh01G018070Watermelon (Charleston Gray)cmawcgB434
CmaCh01G018070Watermelon (97103) v1cmawmB422
CmaCh01G018070Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G018070Cucurbita pepo (Zucchini)cmacpeB460
CmaCh01G018070Cucurbita pepo (Zucchini)cmacpeB482
CmaCh01G018070Cucurbita pepo (Zucchini)cmacpeB507
CmaCh01G018070Cucurbita pepo (Zucchini)cmacpeB517
CmaCh01G018070Bottle gourd (USVL1VR-Ls)cmalsiB405
CmaCh01G018070Bottle gourd (USVL1VR-Ls)cmalsiB456
CmaCh01G018070Cucumber (Gy14) v2cgybcmaB199
CmaCh01G018070Cucumber (Gy14) v2cgybcmaB514
CmaCh01G018070Cucumber (Gy14) v2cgybcmaB779
CmaCh01G018070Cucumber (Gy14) v2cgybcmaB934
CmaCh01G018070Melon (DHL92) v3.6.1cmamedB464
CmaCh01G018070Melon (DHL92) v3.6.1cmamedB475
CmaCh01G018070Melon (DHL92) v3.6.1cmamedB499
CmaCh01G018070Melon (DHL92) v3.6.1cmamedB520