CmoCh01G018630 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G018630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 13532811 .. 13533157 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGATGTCTCTGTTTCGTTGTGGGTGTTCTGCTAATGGTGGTTTGGACGCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCGGTGGTGGAGCCAATTGAAATGGTAGCTTATATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTGGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTAGTAAAAAAGGTCCCGGACATTGACCATTATCTTCAATGTTTCTTCTTCATTGTTTTGTGTATCAGTGTTATGGAGGGAGAATTCGTTTCTTCATTTATTCCAATAA

mRNA sequence

ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGATGTCTCTGTTTCGTTGTGGGTGTTCTGCTAATGGTGGTTTGGACGCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCGGTGGTGGAGCCAATTGAAATGGTAGCTTATATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTGGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTATGTTATGGAGGGAGAATTCGTTTCTTCATTTATTCCAATAA

Coding sequence (CDS)

ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGATGTCTCTGTTTCGTTGTGGGTGTTCTGCTAATGGTGGTTTGGACGCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCGGTGGTGGAGCCAATTGAAATGGTAGCTTATATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTGGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTATGTTATGGAGGGAGAATTCGTTTCTTCATTTATTCCAATAA
Homology
[Close]
BLAST of CmoCh01G018630 vs. TrEMBL
Match: A0A0A0KZV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-07
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 1  MAMELRGTASGRCLCFVVGVLLMVVWTQFVSVEGRVLKGVADEAV-----VEPIEMVAYM 60
          MAM+L    S + +CFVVGVLLM+  T F+ VEGRVL+   ++       +E ++ +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFGSLSFVLSSGP 81
             +SLS SSRS+F SLSFVL+SGP
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGP 81

[Close]
BLAST of CmoCh01G018630 vs. NCBI nr
Match: gi|700200082|gb|KGN55240.1| (hypothetical protein Csa_4G641720 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 8.3e-07
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 1  MAMELRGTASGRCLCFVVGVLLMVVWTQFVSVEGRVLKGVADEAV-----VEPIEMVAYM 60
          MAM+L    S + +CFVVGVLLM+  T F+ VEGRVL+   ++       +E ++ +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFGSLSFVLSSGP 81
             +SLS SSRS+F SLSFVL+SGP
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGP 81

The following BLAST results are available for this feature:
BLAST of CmoCh01G018630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G018630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZV6_CUCSA5.8e-0747.06Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1[more]
BLAST of CmoCh01G018630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G018630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200082|gb|KGN55240.1|8.3e-0747.06hypothetical protein Csa_4G641720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G018630.1CmoCh01G018630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G018630CmaCh01G018070Cucurbita maxima (Rimu)cmacmoB469
CmoCh01G018630Cla020629Watermelon (97103) v1cmowmB434
CmoCh01G018630ClCG05G020290Watermelon (Charleston Gray)cmowcgB412
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G018630Cucumber (Gy14) v2cgybcmoB193
CmoCh01G018630Cucumber (Gy14) v2cgybcmoB485
CmoCh01G018630Cucumber (Gy14) v2cgybcmoB758
CmoCh01G018630Melon (DHL92) v3.6.1cmomedB461
CmoCh01G018630Melon (DHL92) v3.6.1cmomedB486
CmoCh01G018630Melon (DHL92) v3.6.1cmomedB508
CmoCh01G018630Silver-seed gourdcarcmoB0259
CmoCh01G018630Silver-seed gourdcarcmoB0548
CmoCh01G018630Silver-seed gourdcarcmoB1044
CmoCh01G018630Cucumber (Chinese Long) v3cmocucB0510
CmoCh01G018630Cucumber (Chinese Long) v3cmocucB0551
CmoCh01G018630Cucumber (Chinese Long) v3cmocucB0572
CmoCh01G018630Watermelon (97103) v2cmowmbB422
CmoCh01G018630Watermelon (97103) v2cmowmbB461
CmoCh01G018630Watermelon (97103) v2cmowmbB486
CmoCh01G018630Wax gourdcmowgoB0570
CmoCh01G018630Wax gourdcmowgoB0581
CmoCh01G018630Wax gourdcmowgoB0598
CmoCh01G018630Cucurbita moschata (Rifu)cmocmoB017
CmoCh01G018630Cucurbita moschata (Rifu)cmocmoB105
CmoCh01G018630Cucurbita moschata (Rifu)cmocmoB141
CmoCh01G018630Cucurbita moschata (Rifu)cmocmoB360
CmoCh01G018630Cucurbita moschata (Rifu)cmocmoB369
CmoCh01G018630Cucurbita moschata (Rifu)cmocmoB376
CmoCh01G018630Cucumber (Gy14) v1cgycmoB0626
CmoCh01G018630Cucumber (Gy14) v1cgycmoB0967
CmoCh01G018630Cucumber (Gy14) v1cgycmoB1090
CmoCh01G018630Cucurbita maxima (Rimu)cmacmoB047
CmoCh01G018630Cucurbita maxima (Rimu)cmacmoB184
CmoCh01G018630Cucurbita maxima (Rimu)cmacmoB779
CmoCh01G018630Wild cucumber (PI 183967)cmocpiB428
CmoCh01G018630Wild cucumber (PI 183967)cmocpiB465
CmoCh01G018630Wild cucumber (PI 183967)cmocpiB491
CmoCh01G018630Cucumber (Chinese Long) v2cmocuB424
CmoCh01G018630Cucumber (Chinese Long) v2cmocuB461
CmoCh01G018630Melon (DHL92) v3.5.1cmomeB398
CmoCh01G018630Melon (DHL92) v3.5.1cmomeB403
CmoCh01G018630Melon (DHL92) v3.5.1cmomeB422
CmoCh01G018630Watermelon (Charleston Gray)cmowcgB435
CmoCh01G018630Watermelon (97103) v1cmowmB416
CmoCh01G018630Cucurbita pepo (Zucchini)cmocpeB420
CmoCh01G018630Cucurbita pepo (Zucchini)cmocpeB440
CmoCh01G018630Cucurbita pepo (Zucchini)cmocpeB450
CmoCh01G018630Cucurbita pepo (Zucchini)cmocpeB465
CmoCh01G018630Cucurbita pepo (Zucchini)cmocpeB476
CmoCh01G018630Bottle gourd (USVL1VR-Ls)cmolsiB390
CmoCh01G018630Bottle gourd (USVL1VR-Ls)cmolsiB411
CmoCh01G018630Bottle gourd (USVL1VR-Ls)cmolsiB412
CmoCh01G018630Bottle gourd (USVL1VR-Ls)cmolsiB442