CmoCh01G018630.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G018630.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 13532811 .. 13533157 (-)
Sequence length	282

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGATGTCTCTGTTTCGTTGTGGGTGTTCTGCTAATGGTGGTTTGGACGCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCGGTGGTGGAGCCAATTGAAATGGTAGCTTATATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTGGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTAGTAAAAAAGGTCCCGGACATTGACCATTATCTTCAATGTTTCTTCTTCATTGTTTTGTGTATCAGTGTTATGGAGGGAGAATTCGTTTCTTCATTTATTCCAATAA

mRNA sequence

ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGATGTCTCTGTTTCGTTGTGGGTGTTCTGCTAATGGTGGTTTGGACGCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCGGTGGTGGAGCCAATTGAAATGGTAGCTTATATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTGGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTATGTTATGGAGGGAGAATTCGTTTCTTCATTTATTCCAATAA

Coding sequence (CDS)

ATGGCAATGGAATTGAGGGGCACAGCATCAGGCAGATGTCTCTGTTTCGTTGTGGGTGTTCTGCTAATGGTGGTTTGGACGCAATTTGTAAGTGTTGAAGGAAGGGTTCTGAAAGGAGTTGCAGATGAAGCGGTGGTGGAGCCAATTGAAATGGTAGCTTATATGGCTACACTTGATTCATTAAGTGGCAGTAGTCGCAGTGCATTTGGCAGCTTGAGCTTCGTGTTGTCGTCTGGGCCTATGTTATGGAGGGAGAATTCGTTTCTTCATTTATTCCAATAA

Homology

[Close]

BLAST of CmoCh01G018630.1 vs. TrEMBL
Match: A0A0A0KZV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-07
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 1  MAMELRGTASGRCLCFVVGVLLMVVWTQFVSVEGRVLKGVADEAV-----VEPIEMVAYM 60
          MAM+L    S + +CFVVGVLLM+  T F+ VEGRVL+   ++       +E ++ +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFGSLSFVLSSGP 81
             +SLS SSRS+F SLSFVL+SGP
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGP 81

[Close]

BLAST of CmoCh01G018630.1 vs. NCBI nr
Match: gi|700200082|gb|KGN55240.1| (hypothetical protein Csa_4G641720 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 8.3e-07
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 1  MAMELRGTASGRCLCFVVGVLLMVVWTQFVSVEGRVLKGVADEAV-----VEPIEMVAYM 60
          MAM+L    S + +CFVVGVLLM+  T F+ VEGRVL+   ++       +E ++ +  +
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLV 60

Query: 61 ATLDSLSGSSRSAFGSLSFVLSSGP 81
             +SLS SSRS+F SLSFVL+SGP
Sbjct: 61 DEANSLSSSSRSSFRSLSFVLASGP 81

The following BLAST results are available for this feature:

BLAST of CmoCh01G018630.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G018630.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZV6_CUCSA	5.8e-07	47.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641720 PE=4 SV=1	[more]

BLAST of CmoCh01G018630.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G018630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200082\|gb\|KGN55240.1\|	8.3e-07	47.06	hypothetical protein Csa_4G641720 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G018630	CmoCh01G018630	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018630.1	CmoCh01G018630.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018630.1.CDS.2	CmoCh01G018630.1.CDS.2	CDS
CmoCh01G018630.1.CDS.1	CmoCh01G018630.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018630.1.exon.2	CmoCh01G018630.1.exon.2	exon
CmoCh01G018630.1.exon.1	CmoCh01G018630.1.exon.1	exon