CsaV3_4G033590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G033590
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 23794559 .. 23796932 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACAACTCTCCACGTTTCATCATTAACATAATAATTGTTAATAAAAACGCACTCTTAAGAGGTAAAAATGGAAAAAATAAAAAGGAGAAGAAGAAGATCCACCGATTGAAGTTTACCGTAAATTGGAAAAATGGCTTACTCCAATCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTGCTGTTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTAACTTTTGTAGGAATTGAAAACCAAAATTTTACTTTTTAATGTCCCCTTGCGTATGTTCTGCTTTTCATTTTATGATAGAAAAACCCAACATCCCATTTTGAATTTGATAGTATGATTATTTAAATATTTGTTTTTTGTTCATTTAATTACTATCTATTGATTGATTTTGTTTTCTTTTAATTTTGTTCGTTTGCTTATATACTATTAGGGGGAAGATCTCGATCCTAATAACATTGCTTTGAGAATCAAATTTCGATAATTAGTATGTTAAAGCAAACATTATTAAATAAAAATAGAAATATATAAGGTTAGTGATTGATTCTTTTCTCATTGATTACTTTTAGGGGTGAAAACAAAATCCCACATTGGTTAAGGAATGAAGTGATAAATCTAGGATTGGTTGGAAAAAGAAAGTGATCAAGAAATCACACATATCTCATCAGGTTTAAGATTTTTTTTGCAAAATCACGAGGGTTTATACCCGAAATGGACACACGTTGTCTACAAATAAACGCTTTCGTGGTATTAATTATGAAAGAAAAAGTAGTTTTTAACCCATCGAGCTAGATTCAAAATAAGCTGTTTTTGTAGACAACGTGTGTCCAGCTCGTCCAACTAGGGGGGCGCCATTGTGGCAATAATGTGAGAAGAGATTTGATGATTATAATTTGTCTTCAATTCAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGGTAACTATCAAAAACATCTTACTTTTTTATATATATCTTTGATCCATCACAATTGGGTGATACGCACAAATATGATCAGTTAGCCTCGAATTTGCACAAGAAGCGATTCACATGCAGACTCTTTTCTATCATATTAATACTAGAATTAAATAATTTCTTTATCATGATTAATTTCAAATTAAAAATATTCTTCATTTTAACTATAATTCAATTCAATTCAAACTAACTATTTATTTTTCTTAACTTGAATATGAGCTGCTGTTGAATTTTTATTTTTCTATTTAACTTGACTTAAAACTCAAATTTATATTTTTTTAAAAAAAATTAATATGAGAAATAGTTAATTAAATATGCACGAAGATTTCAAGTGTATACATATCATTTGGAAAAACAAAAATTTGTAGCCAAAATAAACTTCACTTACTGATATCGGTACATGTAAGGCTCAATCGCCATCCCGTTGTACTAATAATAATGTATAATTTTGTATTTAGGTAAAGATATAATCGTGCAAGTCTATATTGTTGACTACTGCTACACAGCTATAGAAGCACAATTGTTAGTGTGGAATGAATCTGATACCTAATGCAAATAGATCAAGAAAATTTGAAAGAGACAAACCCATCATCTGAAATTTTAAGTAAATACTCAAATACATGTTTCTTCCAATTGGAAGTGCTTTTGATAATTTCATTTTCCCTTTTGGAAAGAAAAAATAGATGTTATTATTTATAGCTTTTGATGATCTGATTGATGAAGAAGCTTAAGGTCGTATATTTTCTTGCAGATGATCAGAAGCAATAGTTCTATGGCTTTTTAGCTTCCAACTGTTTGGCAAATATGAAAAAAGGGGATGAAGTTTCTCCATCGTCTTCTTAAATTAAAACCTCTCAATGTTAAGGGGTAATATGAATTTGGTTTGCCTATAATTTTATTGATTATATATAATAATAATTTTTTTTGGTTGTGGATGGGATACAATTTTGAGGATGATCCTATTGCTTCTTATAATATATACATATATATATGGGTTATTGTGTTTGTGAGTCTACCAACGTGATAAAAAAAAACTTGTACAAGTGATCAAATTGATGTGTGTCTGATAGACCTTAGTAGGGATAGAACTCTATCATTACCGTGATAGATATCATGTATAGGAACAAGATAAAATTTAGTCCTGAATTTGAATTAGTGATAGATATCATGTATAGGAA

mRNA sequence

ATGGCTTACTCCAATCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTGCTGTTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGATGATCAGAAGCAATAG

Coding sequence (CDS)

ATGGCTTACTCCAATCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTGCTGTTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGATGATCAGAAGCAATAG

Protein sequence

MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ
Homology
[Close]
BLAST of CsaV3_4G033590 vs. NCBI nr
Match: XP_004146059.1 (PREDICTED: uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hypothetical protein Csa_4G631600 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 2.7e-54
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60
           MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 120
           ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 119

[Close]
BLAST of CsaV3_4G033590 vs. NCBI nr
Match: XP_020418791.1 (uncharacterized protein LOC109949012 [Prunus persica])

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 57  AKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMEN 114
           AKAEE+  ++V   K R+  + A+D+TK   +KV DT++AEANENV+DTTEYR+ME+
Sbjct: 88  AKAEEVAEDLVDMAKERT--DFAWDSTKNKTQKVGDTLVAEANENVIDTTEYRNMED 142

[Close]
BLAST of CsaV3_4G033590 vs. NCBI nr
Match: XP_024924886.1 (uncharacterized protein LOC112489944 [Ziziphus jujuba] >XP_024922679.1 uncharacterized protein LOC112488976 [Ziziphus jujuba] >XP_024928693.1 uncharacterized protein LOC112491368 [Ziziphus jujuba])

HSP 1 Score: 53.1 bits (126), Expect = 7.4e-04
Identity = 27/61 (44.26%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 54  VTGAKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMEN 113
           V   + EE ++EM K+      ++ A+D+ K T +KV+DT++AEA+ENVVDT+EYR++E+
Sbjct: 76  VKATEMEEKLSEMAKE-----AMDTAWDSAKNTTQKVEDTLVAEADENVVDTSEYRAIED 131

Query: 114 M 115
           +
Sbjct: 136 I 131

[Close]
BLAST of CsaV3_4G033590 vs. TrEMBL
Match: tr|A0A0A0L055|A0A0A0L055_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.8e-54
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60
           MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 120
           ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 119

The following BLAST results are available for this feature:
BLAST of CsaV3_4G033590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146059.12.7e-54100.00PREDICTED: uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hy... [more]
XP_020418791.13.0e-0554.39uncharacterized protein LOC109949012 [Prunus persica][more]
XP_024924886.17.4e-0444.26uncharacterized protein LOC112489944 [Ziziphus jujuba] >XP_024922679.1 uncharact... [more]
BLAST of CsaV3_4G033590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033590 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L055|A0A0A0L055_CUCSA1.8e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G033590.1CsaV3_4G033590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G033590CSPI04G23370Wild cucumber (PI 183967)cpicucB212
CsaV3_4G033590CsGy4G021730Cucumber (Gy14) v2cgybcucB171
CsaV3_4G033590ClCG11G017970Watermelon (Charleston Gray)cucwcgB288
CsaV3_4G033590Lsi04G020630Bottle gourd (USVL1VR-Ls)cuclsiB304
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G033590Cucurbita moschata (Rifu)cmocucB0016
CsaV3_4G033590Cucurbita moschata (Rifu)cmocucB0246
CsaV3_4G033590Cucurbita moschata (Rifu)cmocucB0393
CsaV3_4G033590Cucurbita moschata (Rifu)cmocucB0483
CsaV3_4G033590Cucurbita moschata (Rifu)cmocucB0552
CsaV3_4G033590Cucurbita pepo (Zucchini)cpecucB0042
CsaV3_4G033590Cucurbita pepo (Zucchini)cpecucB0270
CsaV3_4G033590Cucurbita pepo (Zucchini)cpecucB0647
CsaV3_4G033590Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G033590Cucurbita pepo (Zucchini)cpecucB0970
CsaV3_4G033590Wild cucumber (PI 183967)cpicucB039
CsaV3_4G033590Wild cucumber (PI 183967)cpicucB354
CsaV3_4G033590Bottle gourd (USVL1VR-Ls)cuclsiB291
CsaV3_4G033590Bottle gourd (USVL1VR-Ls)cuclsiB314
CsaV3_4G033590Melon (DHL92) v3.5.1cucmeB275
CsaV3_4G033590Melon (DHL92) v3.5.1cucmeB333
CsaV3_4G033590Melon (DHL92) v3.6.1cucmedB268
CsaV3_4G033590Melon (DHL92) v3.6.1cucmedB291
CsaV3_4G033590Melon (DHL92) v3.6.1cucmedB326
CsaV3_4G033590Watermelon (Charleston Gray)cucwcgB302
CsaV3_4G033590Watermelon (97103) v1cucwmB346
CsaV3_4G033590Watermelon (97103) v1cucwmB367
CsaV3_4G033590Watermelon (97103) v2cucwmbB272
CsaV3_4G033590Watermelon (97103) v2cucwmbB281
CsaV3_4G033590Wax gourdcucwgoB408
CsaV3_4G033590Wax gourdcucwgoB426
CsaV3_4G033590Cucumber (Chinese Long) v3cuccucB030
CsaV3_4G033590Cucumber (Chinese Long) v3cuccucB183
CsaV3_4G033590Silver-seed gourdcarcucB0172
CsaV3_4G033590Silver-seed gourdcarcucB0194
CsaV3_4G033590Silver-seed gourdcarcucB0344
CsaV3_4G033590Silver-seed gourdcarcucB0690
CsaV3_4G033590Cucumber (Gy14) v2cgybcucB034
CsaV3_4G033590Cucumber (Gy14) v1cgycucB027
CsaV3_4G033590Cucumber (Gy14) v1cgycucB167
CsaV3_4G033590Cucurbita maxima (Rimu)cmacucB0028
CsaV3_4G033590Cucurbita maxima (Rimu)cmacucB0258
CsaV3_4G033590Cucurbita maxima (Rimu)cmacucB0396
CsaV3_4G033590Cucurbita maxima (Rimu)cmacucB0494
CsaV3_4G033590Cucurbita maxima (Rimu)cmacucB0566