CSPI04G23370 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G23370
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 21468575 .. 21470541 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAACGCACTCTTAAGAGGTAAAAATGGAAAAAATAAAAAGGAGAAGAAGAAGATCCACCGATTGAAGTTTACCGTAAATTGGAAAAATGGCTTACTCCAACCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTAACTTTTGTAGGAATTGAAAACCAAAATTTTACTTTTTAATGTCCCCTTGCGTATGTTCTGCTTTTCATTTTATGATAGAAAAACCCAACATCCCATTTTGAATTTGATAGTATGATTATTTAAATATTTGTTTTTTGTTCATTTAATTACTATCTATTGATTGATTTTGTTTTCTTTTAATTTTGTTCGTTTGCTTATATACTATTAGGGGGAAGATCTCGATCCTAATAACATTGCTTTGAGAATCAAATTTCGATAATTAGTATGTTAAAGCAAACATTATTAAATAAAAATAGAAATATATAAGGTTAGTGATTGATTCTTTTCTCATTGATTACTTTTAGGGGTGAAAACAAAATCCCACATTGGTTAAGGAATGAAGTGATAAATCTAGGATTGGTTGGAAAAAAAAAGTGATCAAGAAATCACACATATCTCATCAGGTTTAAGATTTTTTTTGCAAAATCACGAGGGTTTATACCCGAAATGGACACACGTTGTCTACAAATAAACGCTTTCGTGGTATTATTTATGAAAGAAAAAGTAGTTTTTAACCCATCGAGCTAGATTCAAAATAAGCTATTTTTGTAGACAACGTGTGTCCAGCTCGTCCAACTAGGGGGGCGCCATTGTGGCAATAATGTGAGAAGAGATTTGATGATTATAATTTGTCTTCAATTCAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGGTAACTATCAAAAACATCTTACTTTTTTATATATATCTTTGATCCATCACAATTGGGTGATACGCACAAATATGATCAGTTAGCCTCGAATTTGCACAAGAAGCGATTCACATGCAGACTCTTTTCTAGCATATTAATACTAGAATTAAATAATTTCTTTATCATGATTAATTTCAAATTAAAAATATTCTTCATTTTAATTATAATTCAATTCAATTCAAACTAACTATTTATTTTTCTTAACTTGAATATGTGTTGCTGTTGAATTTTTATTTTTCTATTTAACTTGACTTAAAACTCAAATTTATATTTTTTTAAAAAAAATTAATATGAGAAATAGTTAATTAAATATGCACGAAGATTTCAAGTGTATGCATATCATTTGGAAAAACAAAAATTTGTAGCCAAAATAAACTTCACTTACTGATATCGGTACATGTAAGGCTCAATCGCCATCCCGTTGTACTAATAATAATGTATAATTTTGTATTTAGGTAAAGATATAATCGTGCAAGTCTATATTGTTGACTACTGCTACACAGCTATAGAAGCACAATTGTTAGTGTGGAATGAATCTGATACCTAATGCAAATAGATCAAGAAAATTTGAAAGAGACAAACCCATCATCTGAAATTTTAAGTAAATACTCAAATACATGTTTCTTCCAATTGGAAGTGCTTTTGATAATTTCATTTTCCTTTTTGGAAAGAAAAAATAGATGTTATTATTTATAGCTTTTGATGATCTGATTGATGAAGAAGCTTAAGGTCGTATATTTTCTTGCAGATGATCAGAAGCAATAGTTCTATGGCTTTTTAGCTTCCAACTGTTTGGCAAATATGAAAAAAGGGGAT

mRNA sequence

ATGGCTTACTCCAACCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGATGATCAGAAGCAATAG

Coding sequence (CDS)

ATGGCTTACTCCAACCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGATGATCAGAAGCAATAG
Homology
[Close]
BLAST of CSPI04G23370 vs. TrEMBL
Match: A0A0A0L055_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G631600 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-52
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 1 

Query: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAA--PPFSPAPAVSISYKVDTSEERDVTGAKAE 60
           MAYSNRSVVAFRFSKALFEQCHGAAAAAA  PPFSPAPAVSISYKVDTSEERDVTGAKAE
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 118
           ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 119

[Close]
BLAST of CSPI04G23370 vs. NCBI nr
Match: gi|449456645|ref|XP_004146059.1| (PREDICTED: uncharacterized protein LOC101215612 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-52
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 1 

Query: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAA--PPFSPAPAVSISYKVDTSEERDVTGAKAE 60
           MAYSNRSVVAFRFSKALFEQCHGAAAAAA  PPFSPAPAVSISYKVDTSEERDVTGAKAE
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 118
           ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 119

The following BLAST results are available for this feature:
BLAST of CSPI04G23370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G23370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L055_CUCSA1.5e-5298.32Uncharacterized protein OS=Cucumis sativus GN=Csa_4G631600 PE=4 SV=1[more]
BLAST of CSPI04G23370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G23370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456645|ref|XP_004146059.1|2.2e-5298.32PREDICTED: uncharacterized protein LOC101215612 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G23370.1CSPI04G23370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G23370Csa4G631600Cucumber (Chinese Long) v2cpicuB181
CSPI04G23370Lsi04G020630Bottle gourd (USVL1VR-Ls)cpilsiB283
CSPI04G23370CsaV3_4G033590Cucumber (Chinese Long) v3cpicucB212
CSPI04G23370CsGy4G021730Cucumber (Gy14) v2cgybcpiB169
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G23370Cucumber (Chinese Long) v3cpicucB202
CSPI04G23370Cucumber (Chinese Long) v3cpicucB244
CSPI04G23370Watermelon (97103) v2cpiwmbB277
CSPI04G23370Watermelon (97103) v2cpiwmbB286
CSPI04G23370Wax gourdcpiwgoB404
CSPI04G23370Wax gourdcpiwgoB421
CSPI04G23370Wild cucumber (PI 183967)cpicpiB026
CSPI04G23370Wild cucumber (PI 183967)cpicpiB165
CSPI04G23370Cucumber (Gy14) v1cgycpiB027
CSPI04G23370Cucumber (Gy14) v1cgycpiB164
CSPI04G23370Cucurbita maxima (Rimu)cmacpiB021
CSPI04G23370Cucurbita maxima (Rimu)cmacpiB345
CSPI04G23370Cucurbita maxima (Rimu)cmacpiB477
CSPI04G23370Cucurbita moschata (Rifu)cmocpiB012
CSPI04G23370Cucurbita moschata (Rifu)cmocpiB466
CSPI04G23370Cucumber (Chinese Long) v2cpicuB171
CSPI04G23370Cucumber (Chinese Long) v2cpicuB203
CSPI04G23370Melon (DHL92) v3.5.1cpimeB269
CSPI04G23370Melon (DHL92) v3.5.1cpimeB329
CSPI04G23370Watermelon (Charleston Gray)cpiwcgB289
CSPI04G23370Watermelon (Charleston Gray)cpiwcgB301
CSPI04G23370Watermelon (97103) v1cpiwmB336
CSPI04G23370Watermelon (97103) v1cpiwmB356
CSPI04G23370Cucurbita pepo (Zucchini)cpecpiB525
CSPI04G23370Cucurbita pepo (Zucchini)cpecpiB567
CSPI04G23370Cucurbita pepo (Zucchini)cpecpiB785
CSPI04G23370Bottle gourd (USVL1VR-Ls)cpilsiB256
CSPI04G23370Bottle gourd (USVL1VR-Ls)cpilsiB273
CSPI04G23370Melon (DHL92) v3.6.1cpimedB265
CSPI04G23370Melon (DHL92) v3.6.1cpimedB320
CSPI04G23370Cucumber (Gy14) v2cgybcpiB028
CSPI04G23370Cucumber (Gy14) v2cgybcpiB281
CSPI04G23370Silver-seed gourdcarcpiB0172
CSPI04G23370Silver-seed gourdcarcpiB0194
CSPI04G23370Silver-seed gourdcarcpiB0345
CSPI04G23370Silver-seed gourdcarcpiB0688