CsaV3_4G033460 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G033460
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	30S ribosomal protein S20, putative
Location	chr4 : 23692715 .. 23695881 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAGCTGCAATTACTTGCTTCTCTCTTTCTTCTAAGTTCGGAAATCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGTGAGTTTTTATGGGGTTCCTTTGTTTTTCCATTTTATATTCTTTTTTTAGGAAAACTATTGAATTGCTGCTGGACTTACTTTTGTCCATTTTTGTAAAGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCGAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAATCTGAAATTAAAACCAGGATGAAGAAGGTACTTAAATTTTGCCCCTTTGTATGCGCATTTAAATATAATGAAATCTATAGGAATGATATACTCTAGAATTCGTTTTATCTCAGAGTATTGTATATTTCTTTTATAAGAAATATTTTTTTATTGATGGAAGGAAATTACAAATGAAAGGGGAAAACCCCTAAATGAGACATTACAGTTTGAAAGGAGATTAGTATAGCTAATAGTGGTGAAATAAGGGAGTGCATTTACACCAAGTCTCTACCATGTTAACTATAGCATAAAAAGTTACAATGAGAAAGTTATTTGTCTTGGACTACTATTCCGTCCTTGCCAAATGTTTCAGCAGAACGCTCTAATGGAAAGGTGCCCTTGAAGGACAAAGGATAGGATCTTCTGGAAGAGCTGTGTGCCATAAAAGCTGTGTCACGATTTTTCCTAGGCAGTATTTTATAGTTGGGAACCCTTGCTCTTAGGGTTTTTGTGGGCTTGGTTTTCTGTATGCATTGTTTCATCTTTTCTTGATAAAAGTAGTTTTTGTATTAAAAAATGGAAGTAGAAATGAAATAGTTCCAAAAGGTGTTACTGTTGGCAAAGGTGCGTGATAACAAAGGGTAACTTTGTGATTCAGATTGTTGTTTTCAATTAGAGCACCAATGTGGAGACAGAACCATGTAAAGTATTCTTCTTTGGAGCTCATAATAGGTTTTGATGGCTTTCTTAGATAGCTCCCAAAGAAAAAAATTTATCTTCTTTGGATAGTCACCTTTCCATACCAGATGATACAGAGACAAGGTTTCATCGATGGATGGTATTGAAAGTAGAGACATAGAACAAACACAAATTTACATGGAAATCCTAGTATAGGGAGAAAAACCACGATCCTGATATTTCTTATTATTTTCTTATGATAATCAAGGTACAAAGGGTGAAGTATTTATAGGCAACACGAGCCTTATTAAAATACTAAAAAATTAGGACAAAGTAAATCTTAACTTCTCTTGGGCTTTCAACATGATTTAAGCCTACCATTTCTAACAGAGGGGAATAAATCATACAAAAGGGAGCTATTTGGAAAAACACCAGCGGGTTCTAGCTTCCAAAGGCCCCTGTCAGGTCTGTTGTGAAAGGAAACAGCTGCTAGAATGTGTAAGATAGTTCCATATTCTTCAATTTATTAGGTTCCTTTTCAATATTAGGTTCCAACCCAGGGTTTGTGTTCCAAAATTTGGTATTAGCCCAATCTTGTTGTAAGAAAAGGCAAGAATGAGGGGGGTTTGTATGGAATGTAATTCTAGGTGATTTTCATTTCAGGGTGGTATGTGCCTAATTTGTAAGGACCTTTAGAGAAACTGAGGTATATCAAGACTCAAGGGGTTAAGTACTCCGTTATGTTCCTTACGAAGTGTGCAAGGCGACGGTTGTTACTTAAGCTGTTGAAGATAAATGTGTGAAATGATTATCCTCATCTTAACTTGTCCTTAATGGGGACTGGATGAAATTCTTAAAATCAAGAGATGGAAAGTAGATGCTTACAGTTTTGTATTCAGATCGATGGAAAAATGGTTTATATATATATATACTCGTGCATAATATGGTATTGTTTGATAAGGTCAATGGTAGCTCGATGGTTTGGATTCTTCTTGTGAAAATCTGATCAGCAGAAAATCTTATTTTTTCAGAAATGATTATAATTACTGTTCACTGGGAAAAAATGATAGTATAGAAAGAAAAAAAAAGTATGAATTTTGCTTCAGAAATCTTATAATCAAGACTGATTTTCTCATATATAAAAGTTATCATTTAAGTTATTAAATTGGACTTTTGATGTATAACAGAAAAATTAAACTATCAAGATCCCAACTTGATGGAGAATTGTAGGAGGACTAGAAAGAAAAGTCCAGTAAATGGTAAAGTTGAATCCTTTCTGATTGGTCAGAGACAGGTTCTTTAGGAAGTTTTCATGTGGGTAATGAGTTTATGACTGAATTTTGTATAATTTCTTTTGGATCTTTTTCCAGCCTCTCTTCAAGTCTTGGACTTATTCAAGGCCATTAAGGTGTTTGAATAGCCCTTTGGCTTAGCTGTAGATCTTTTTGAATCTTTGGTTGCGACCATCAATTGTTCTTTGCATGAGCTATGCAATATGATTAACATCTTTTCCCGTTCTAATTATAAGTGGCCTTTGTGTTATCCTGTGGATCTTAGAGGTAATCCTAAGCTGTAAAGTCGTGTGTGACCAATGACTAAGAGGATCTCGTTTCTTCTTTTCAGTGCCTCCAGGGGAGTGCGTAATTCTGTTTGCGAAGCTTTCTTTGGTCATCCTTCCAAAAAATCATAAGCTTTATGGCTTCTTGCTTTAGAGTTTTCTTATATCTGCTAAAGGACAGGACTAAAGCATAATCTTCATGTGGTTGAATAAAACATCCTCTACATACTTGCTTTTGAATATTGTGAAGAAAAAGATAAAATTTTCTGTTTCTTTCCAGAACTAATCAGCACAATAATGACCTCTCCCTCGTTACATTTCCAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGACGCTCATTGCAGAAGCATACTCAGTGATCGACAAAGCCGTGAGAGCGGGCACATTGCACCGAAACACTGCCGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGGTGGTACACCCCGGATTCACCAGCGGCTGCCTGA

mRNA sequence

ATGGCGGCAGCTGCAATTACTTGCTTCTCTCTTTCTTCTAAGTTCGGAAATCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCGAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAATCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGACGCTCATTGCAGAAGCATACTCAGTGATCGACAAAGCCGTGAGAGCGGGCACATTGCACCGAAACACTGCCGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGGTGGTACACCCCGGATTCACCAGCGGCTGCCTGA

Coding sequence (CDS)

ATGGCGGCAGCTGCAATTACTTGCTTCTCTCTTTCTTCTAAGTTCGGAAATCTTTCCCTTAATGGGTTTTCCTCCTCTATTCCCGCTGCCCCATCTTCTTCCACCCTCAGGTCTCTCAGTTTCTCCTCCAACATTTCACTTTCCGCCTTCTCCAATGGGTGTCTGTCGATGAGGAAAACTGAGAGGCTGCATCGTTACTCTGTGGTTTGCGAGGCAGCTCCGAAGTCCAAAGTTGATTCTGCTGCCAAGAGGGCTCGGCAGGCTGAGAAAAGACGTATTTACAATAAAGCCCGAAAATCTGAAATTAAAACCAGGATGAAGAAGGTTCTGGAAGCTTTAGATGGTCTCAAGAAGAAAGCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGACGCTCATTGCAGAAGCATACTCAGTGATCGACAAAGCCGTGAGAGCGGGCACATTGCACCGAAACACTGCCGCACGACGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGGTGGTACACCCCGGATTCACCAGCGGCTGCCTGA

Protein sequence

MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAA

Homology

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BLAST of CsaV3_4G033460 vs. NCBI nr
Match: XP_004146049.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypothetical protein Csa_4G630000 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 4.4e-88
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

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BLAST of CsaV3_4G033460 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo])

HSP 1 Score: 325.1 bits (832), Expect = 1.6e-85
Identity = 177/184 (96.20%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCF+LSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

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BLAST of CsaV3_4G033460 vs. NCBI nr
Match: XP_022981947.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 2.5e-67
Identity = 146/184 (79.35%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAA+ +CF+L SKFGNLSLN  SS +P + SS  LRSLSFSSN+S+SAFS+GCLSM   
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAP+ K DSAAKRARQAEKRR YNKARKSEI+TRMKK +EALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLP+E LIAEAYSVIDKAV+ GTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of CsaV3_4G033460 vs. NCBI nr
Match: XP_022941386.1 (30S ribosomal protein S20, chloroplastic [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 147/184 (79.89%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAA+ +CF+L SKFGNLSLN   S +P + SS  L+SLSFSSNIS+SAFSNGCLSM   
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAP+ K DSAAKRARQAEKRR YNKARKSEI+TRMKK +EALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE LIAEAYSVIDKAV+ GTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of CsaV3_4G033460 vs. NCBI nr
Match: XP_022139608.1 (30S ribosomal protein S20, chloroplastic [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 142/184 (77.17%), Postives = 146/184 (79.35%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCFS+SSKF NLSLN  SS                       AFSNGCLSM + 
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSXXXXXXXXXXXXXXXXXXXXXXXAFSNGCLSMSEA 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R  RYSVVCEAAPK KVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALD LKKK 
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVL IE LIAEAYSVIDKAV+ GTLHRNTAARRKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of CsaV3_4G033460 vs. TAIR10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative)

HSP 1 Score: 181.8 bits (460), Expect = 3.9e-46
Identity = 114/187 (60.96%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 7   TCFSLSSKFGNLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C +L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERLHRYSVVCE-AAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K     R  +VCE AAP  K DSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KP---MRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +E LI EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]

BLAST of CsaV3_4G033460 vs. Swiss-Prot
Match: sp|P82130|RR20_SPIOL (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-46
Identity = 111/178 (62.36%), Postives = 132/178 (74.16%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MA  +  C S+SSK  NLS +  S+  P    +S+L+ L+FS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSFS--STQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           +R   +SVVCE A   K DSAAKR RQAE RR+ NKARKSE+KTRM+KV EALD LKKK+
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]

BLAST of CsaV3_4G033460 vs. Swiss-Prot
Match: sp|Q9ASV6|RR20_ARATH (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.9e-45
Identity = 114/187 (60.96%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 7   TCFSLSSKFGNLSLNGFSSSIPAAP------SSSTL-RSLSFSSNIS-LSAFSNGCLSMR 66
           +C +L S+F  LSL G S S P++       +S+TL  SLSFS ++S   AFS G L ++
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  KTERLHRYSVVCE-AAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLK 126
           K     R  +VCE AAP  K DSAAKRARQAEKRR+YNK++KSE +TRMKKVLEAL+GLK
Sbjct: 70  KP---MRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKAEAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +E LI EAYS IDKAV+   LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]

BLAST of CsaV3_4G033460 vs. Swiss-Prot
Match: sp|Q3M5D2|RS20_ANAVT (30S ribosomal protein S20 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsT PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIETLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT MK  L A+         +S++    +T +A AYS
Sbjct: 7   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 66

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 67  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95

[Close]

BLAST of CsaV3_4G033460 vs. Swiss-Prot
Match: sp|Q8YWL3|RS20_NOSS1 (30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsT PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIETLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT MK  L A+         +S++    +T +A AYS
Sbjct: 6   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 65

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 66  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94

[Close]

BLAST of CsaV3_4G033460 vs. Swiss-Prot
Match: sp|A7HJB0|RS20_FERNB (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEEVLPIETLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K ++K VL A+        AQ +    I  L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRAGTLHRNTAARRKSRLARRKKA 169
            IDKA ++G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]

BLAST of CsaV3_4G033460 vs. TrEMBL
Match: tr|A0A0A0KZK9|A0A0A0KZK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.9e-88
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of CsaV3_4G033460 vs. TrEMBL
Match: tr|A0A1S3CJU9|A0A1S3CJU9_CUCME (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.0e-85
Identity = 177/184 (96.20%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60
           MAAAA+TCF+LSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120
           ER+HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE L+AEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of CsaV3_4G033460 vs. TrEMBL
Match: tr|A0A067LN37|A0A067LN37_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15308 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 130/179 (72.63%), Postives = 146/179 (81.56%), Query Frame = 0


Query: 1   MAAAAI-TCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRK 60
           MAAA + +CF+L +K  NLSLN   S+  A+ SS T RSLSFSS +S + F+ GCLSM  
Sbjct: 1   MAAAVLSSCFALPAKLQNLSLNTTCST--ASSSSPTFRSLSFSSALSHNFFNKGCLSMSI 60

Query: 61  TERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKK 120
             R   YS+VCEAAPK K DSA KRARQAEKRR+YNKARKSEI+TRMKKV+EALD LKKK
Sbjct: 61  VRRPTGYSIVCEAAPKKKADSADKRARQAEKRRVYNKARKSEIRTRMKKVMEALDDLKKK 120

Query: 121 AEAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            +AQ+EEVLPIE LIAEAYSVIDKAV+ GTLHRNT ARRKSRLARRKK VEIHHGWYTP
Sbjct: 121 PDAQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKDVEIHHGWYTP 177

[Close]

BLAST of CsaV3_4G033460 vs. TrEMBL
Match: tr|A0A2K2CAZ2|A0A2K2CAZ2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G396600v3 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.6e-54
Identity = 127/178 (71.35%), Postives = 143/178 (80.34%), Query Frame = 0


Query: 8   CFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKTER-LHRY 67
           C  L  K  NLSLN  +       S+ST  SLSFSS++S S F+ GCLSMR T+R +H +
Sbjct: 36  CLGLPPKLKNLSLNSTTC------STSTFSSLSFSSSLSHSIFNKGCLSMRTTQRSIHNF 95

Query: 68  SVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQSEE 127
           S+VCE+ PK K DSA KR RQAEKRR+YNKARKSE+KTRMKKVLEALD LKKK EAQ EE
Sbjct: 96  SIVCESTPKKKADSAEKRTRQAEKRRVYNKARKSEVKTRMKKVLEALDDLKKKPEAQFEE 155

Query: 128 VLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAA 185
           VLPIE LIAEAYSVIDKA++ GTLHRNT ARRKSRLARRKKAVEIHHGWY+P +PAAA
Sbjct: 156 VLPIEKLIAEAYSVIDKAIKVGTLHRNTGARRKSRLARRKKAVEIHHGWYSP-APAAA 206

[Close]

BLAST of CsaV3_4G033460 vs. TrEMBL
Match: tr|B9T1X1|B9T1X1_RICCO (30S ribosomal protein S20, putative OS=Ricinus communis OX=3988 GN=RCOM_0108620 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.1e-54
Identity = 131/186 (70.43%), Postives = 151/186 (81.18%), Query Frame = 0


Query: 1   MAAAAI--TCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMR 60
           MAAAA+  +CFS+ +K  +LSL   SSS    P+   LRSLSFSS IS   F+ GCLSM 
Sbjct: 1   MAAAAVLSSCFSVPTKLKSLSLTTTSSSTITYPA---LRSLSFSSAISHDVFNKGCLSMS 60

Query: 61  KTERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKK 120
             +R   +S+VCEAAPK + DSAAKRARQAEKRRIY+KA KSE++TRMKKVLEALD L+K
Sbjct: 61  IVKRPIGHSIVCEAAPKKRADSAAKRARQAEKRRIYHKAHKSEVRTRMKKVLEALDDLRK 120

Query: 121 KAEAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 180
           K++AQ+EEVLPIE LIAEAYSVIDKAV+ GTLHRNT ARRKSRLARRKKAVEIHHGWYTP
Sbjct: 121 KSDAQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTP 180

Query: 181 DSPAAA 185
            +PA A
Sbjct: 181 -APAEA 182

The following BLAST results are available for this feature:

BLAST of CsaV3_4G033460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146049.1	4.4e-88	100.00	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105....	[more]
XP_008463697.1	1.6e-85	96.20	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo]	[more]
XP_022981947.1	2.5e-67	79.35	30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]	[more]
XP_022941386.1	3.3e-67	79.89	30S ribosomal protein S20, chloroplastic [Cucurbita moschata]	[more]
XP_022139608.1	1.3e-60	77.17	30S ribosomal protein S20, chloroplastic [Momordica charantia]	[more]

BLAST of CsaV3_4G033460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15190.1	3.9e-46	60.96	chloroplast 30S ribosomal protein S20, putative	[more]

BLAST of CsaV3_4G033460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82130\|RR20_SPIOL	2.8e-46	62.36	30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P...	[more]
sp\|Q9ASV6\|RR20_ARATH	6.9e-45	60.96	30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2...	[more]
sp\|Q3M5D2\|RS20_ANAVT	2.8e-09	46.15	30S ribosomal protein S20 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ...	[more]
sp\|Q8YWL3\|RS20_NOSS1	2.8e-09	46.15	30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
sp\|A7HJB0\|RS20_FERNB	1.4e-08	46.07	30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]

BLAST of CsaV3_4G033460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZK9\|A0A0A0KZK9_CUCSA	2.9e-88	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1	[more]
tr\|A0A1S3CJU9\|A0A1S3CJU9_CUCME	1.0e-85	96.20	30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779...	[more]
tr\|A0A067LN37\|A0A067LN37_JATCU	1.2e-54	72.63	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15308 PE=3 SV=1	[more]
tr\|A0A2K2CAZ2\|A0A2K2CAZ2_POPTR	1.6e-54	71.35	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G396600v3 PE=...	[more]
tr\|B9T1X1\|B9T1X1_RICCO	6.1e-54	70.43	30S ribosomal protein S20, putative OS=Ricinus communis OX=3988 GN=RCOM_0108620 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR036510	Ribosomal_S20_sf
IPR002583	Ribosomal_S20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0010467	gene expression
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G033460.1	CsaV3_4G033460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..126
IPR002583	Ribosomal protein S20	PFAM	PF01649	Ribosomal_S20p	coord: 79..165 e-value: 9.7E-23 score: 80.5
IPR002583	Ribosomal protein S20	TIGRFAM	TIGR00029	TIGR00029	coord: 78..164 e-value: 1.7E-18 score: 64.9
IPR002583	Ribosomal protein S20	PANTHER	PTHR33398	FAMILY NOT NAMED	coord: 71..179
IPR002583	Ribosomal protein S20	PRODOM	PD004231		coord: 93..154 e-value: 0.002 score: 96.0
IPR002583	Ribosomal protein S20	HAMAP	MF_00500	Ribosomal_S20	coord: 75..168 score: 16.133
IPR036510	Ribosomal protein S20 superfamily	GENE3D	G3DSA:1.20.58.110		coord: 72..176 e-value: 8.7E-29 score: 101.7
IPR036510	Ribosomal protein S20 superfamily	SUPERFAMILY	SSF46992	Ribosomal protein S20	coord: 79..181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G033460	CSPI04G23240	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G033460	Cucsa.122920	Cucumber (Gy14) v1	cgycucB167
CsaV3_4G033460	CmaCh09G008450	Cucurbita maxima (Rimu)	cmacucB0028
CsaV3_4G033460	CmaCh01G012230	Cucurbita maxima (Rimu)	cmacucB0566
CsaV3_4G033460	CmoCh09G008390	Cucurbita moschata (Rifu)	cmocucB0016
CsaV3_4G033460	CmoCh01G012760	Cucurbita moschata (Rifu)	cmocucB0552
CsaV3_4G033460	Cp4.1LG02g01830	Cucurbita pepo (Zucchini)	cpecucB0702
CsaV3_4G033460	Cp4.1LG06g06600	Cucurbita pepo (Zucchini)	cpecucB0970
CsaV3_4G033460	CsGy4G021620	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G033460	Carg17080	Silver-seed gourd	carcucB0194
CsaV3_4G033460	Carg14709	Silver-seed gourd	carcucB0344
CsaV3_4G033460	Cla023360	Watermelon (97103) v1	cucwmB367
CsaV3_4G033460	MELO3C025609	Melon (DHL92) v3.5.1	cucmeB299
CsaV3_4G033460	ClCG11G017820	Watermelon (Charleston Gray)	cucwcgB288
CsaV3_4G033460	Lsi04G020480	Bottle gourd (USVL1VR-Ls)	cuclsiB304
CsaV3_4G033460	MELO3C025609.2	Melon (DHL92) v3.6.1	cucmedB291
CsaV3_4G033460	Cla97C11G223850	Watermelon (97103) v2	cucwmbB281
CsaV3_4G033460	Bhi09G002831	Wax gourd	cucwgoB426

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G033460	Cucumber (Chinese Long) v3	cuccucB030
CsaV3_4G033460	Silver-seed gourd	carcucB0690
CsaV3_4G033460	Cucumber (Gy14) v2	cgybcucB034
CsaV3_4G033460	Cucurbita maxima (Rimu)	cmacucB0258
CsaV3_4G033460	Cucurbita maxima (Rimu)	cmacucB0396
CsaV3_4G033460	Cucurbita moschata (Rifu)	cmocucB0246
CsaV3_4G033460	Cucurbita moschata (Rifu)	cmocucB0393
CsaV3_4G033460	Cucurbita pepo (Zucchini)	cpecucB0270
CsaV3_4G033460	Wild cucumber (PI 183967)	cpicucB039
CsaV3_4G033460	Bottle gourd (USVL1VR-Ls)	cuclsiB291