Cp4.1LG02g01830 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g01830
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	30S ribosomal protein S20, putative
Location	Cp4.1LG02 : 4353027 .. 4355699 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGGATATACAAAACTGGAATCCAAACACCCAAAAATAACGGAAAATAAACCGATACTGCGTAGCTCTTCTTCCAGTGGATAAGCGCATACGAAAGTGTAGTAGAACCGCCATTCTTCAAACTGTGGAGCTTCGTGAATTGCCCAGCGAAAAATGGCGGCGGCTTCATTTAGTTGCTTTGCTCTTCCTTCTAAGTTCGGGAATCTTTCCCTTAATGCTTCTTCCTCCTGTTTGCCTGTTTCCTCGTCTTCTTTGGCTCTCAAATGTCTCAGTTTCTCGTCCAATATTTCAGTTTCTGCCTTCTCCGATGGTAATTTCTTTCTGTCTTCTACTTTGATTTCTTGAAGAATTGGGGTTTATTTTGGTTCATTTTCGTTTAGGGTGCCTGTCGATGAGTGGAGCTCAGAGGCCACTTCGTTACTCTGTGGTTTGCGAGGCGGCTCCTCAGAAAAAGGCTGATTCTGCTGCAAAGAGAGCCCGGCAGGCTGAGAAAAGACGCACTTATAACAAAGCTCGGAAGTCCGAAATCAGAACCAGAATGAAGAAGGTACCTAATTTTGGCTGGTTTTCAGATTTTTGTTATGGAATTCTCTCGGAATTGATGAAATCCATCGCTCGTGAAATTGAAAATGAAAATGAATCTAATGTATCTGTTGATAATGTGGAGAATAAATTTGGGTGTGTTCTGTCTGAGAATTATGCACTCCAGAATTTGTTTCATCTTTGATTGAGTATTTCTATTTGAAACAAACCAGCCCAAGTCCTAACAGCTCCCCTCCTTCTCTACAAGCTTTATTTTTGGCACTGGAATGTTGAATTTCTTGGTGATTTTCGTTCTGGCTGGCATTTGCCTAATTGTTAAGCACTTTTAAAAAACTGAACTGTATCAGAACTGAAGGGGTTAAGTACTTCTGTGTGTTCCTTGGATAGAATTGATGCTTGATGCTTGCTATTATTTTGTATGATTTTGTTTGTCAAGGTCGATCGTAGCTTGTTGGCTTGGTTGCTTTGTTGTTGAGTTGTGCTGCTTGATATGAAAATCTGATCAATTGAAGTTCTTGTTTATAAAAAATAGTTATACACGCTGCCCACCACCCAAATAAGACATGAAACGACAATGTAGGCTACTACAGGGAAGTCAAAGCAACTAAACTAATTTTCTCATGTAGAGAACTAAATAATGATCCTTGGTATATTTTGTATAGTATGAACTATCGAGCATCCATACTTGATGAAGAATTGGAAAATGACTCACAAAAATAGTTAGGCAGCTATAGATGATTGAATATTCTTGTCCAGAGGTGAATTGCTTCAGCATAGAACTTTTCGATGGGCTAGAGATGGGTTTTCTAGATGGTTTTCTTGTTGGTAAAGACCAAATTGACGTGTTTGAATGGCGTTTGGCTTGGCCAAGTTGTTCGAATATTTAGTTGCTGGTGATAATTGTTGTTGTTTCAACTTTGGATGTGAGGTCCCCCATCGGTTGGAGAGGGGAATGAAGCATTTTTTATAAAGACGTGGAAACCTTCCCCTAGCGACACGTTTTAAAAACCTTAAGAGGAAGCCCAAAAGAGAAAGTCCAAAGAGAACAGTACCTACAAACGGTGGGCGTGGGCTTGGGCTTGGGCTTGGGCTGTTACAATGGGAGAGCTGTGTAATATTACTAACATCTTTTCCCTGTGCTAGTAATAAGTGACCTTTTGTGTTACTGGAGTTCCTTCTTGAAATAATCTTAAGTTTGAGAATCTTATGCACCTAGGACGAATTTCTTTTTTTTTACTTTGGTGTCTCTTGCAAATGTTTAATTATGTTTGCAACGTTAGCCACCACGGATTGGTCCAGTGGTCGAAAGGGTTGTGTTTATAAAACTAAGGAATTAGAAAGAATTGGTTCAAGCCATGATGGCCACCTACCCGAAATGTAATATTGTTTGAGGGACCTTGGCCACAAAATATAGTAGGATGATATAGTTGTCTCGAGAGAATAGTTAAAGTGTGCGCAAGCTAGCTCAAACTCTCATGGATGTCCAAATATATATATATATGTTTGCGAAGTTCTCGTTTGTCATCCTTCCATATCAAAATATATATATATATATATGTTTGCGAAGTTCTCGTTTGTCATCCTTCCAAGAAAACGAAAGTGTTGTAGCTTAATCCTTTTCGAGTTTCATTCATTTTTCTTTTGGTAACTATTCTTTCTCTCATACAATTCCAGGCTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTCCAATTGAGAAGCTCATAGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTCGGAACATTACACCGAAACACTGCAGCACACCGAAAATCTCGGCTAGCCAGAAGAAAGAAAGCTGTAGAGATCCACCATGGCTGGTACACCCCTACCTCACCAGCAGCTGCCTGATGCTACCCTCTTGTTCTCATAGCTAATGGGGCTGAAGAAGGAGTGGGAAGATCAGATCAGATCAGATATTGACAAGTTTGTTTCATTTTCCTTCATCTGTTTCTCTTATTTGATATTTAGTTTGAATCTTGTTCTTTGTCTACTGCTGCAGTTTCACTTCTATATCATCTGTGCTCTTGGTTAATGGTTCCATAAAATTTTACTTCAACAAAAGCTTGTTTTAA

mRNA sequence

TTGGGGATATACAAAACTGGAATCCAAACACCCAAAAATAACGGAAAATAAACCGATACTGCGTAGCTCTTCTTCCAGTGGATAAGCGCATACGAAAGTGTAGTAGAACCGCCATTCTTCAAACTGTGGAGCTTCGTGAATTGCCCAGCGAAAAATGGCGGCGGCTTCATTTAGTTGCTTTGCTCTTCCTTCTAAGTTCGGGAATCTTTCCCTTAATGCTTCTTCCTCCTGTTTGCCTGTTTCCTCGTCTTCTTTGGCTCTCAAATGTCTCAGTTTCTCGTCCAATATTTCAGTTTCTGCCTTCTCCGATGGGTGCCTGTCGATGAGTGGAGCTCAGAGGCCACTTCGTTACTCTGTGGTTTGCGAGGCGGCTCCTCAGAAAAAGGCTGATTCTGCTGCAAAGAGAGCCCGGCAGGCTGAGAAAAGACGCACTTATAACAAAGCTCGGAAGTCCGAAATCAGAACCAGAATGAAGAAGGCTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTCCAATTGAGAAGCTCATAGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTCGGAACATTACACCGAAACACTGCAGCACACCGAAAATCTCGGCTAGCCAGAAGAAAGAAAGCTGTAGAGATCCACCATGGCTGGTACACCCCTACCTCACCAGCAGCTGCCTGATGCTACCCTCTTGTTCTCATAGCTAATGGGGCTGAAGAAGGAGTGGGAAGATCAGATCAGATCAGATATTGACAAGTTTGTTTCATTTTCCTTCATCTGTTTCTCTTATTTGATATTTAGTTTGAATCTTGTTCTTTGTCTACTGCTGCAGTTTCACTTCTATATCATCTGTGCTCTTGGTTAATGGTTCCATAAAATTTTACTTCAACAAAAGCTTGTTTTAA

Coding sequence (CDS)

ATGGCGGCGGCTTCATTTAGTTGCTTTGCTCTTCCTTCTAAGTTCGGGAATCTTTCCCTTAATGCTTCTTCCTCCTGTTTGCCTGTTTCCTCGTCTTCTTTGGCTCTCAAATGTCTCAGTTTCTCGTCCAATATTTCAGTTTCTGCCTTCTCCGATGGGTGCCTGTCGATGAGTGGAGCTCAGAGGCCACTTCGTTACTCTGTGGTTTGCGAGGCGGCTCCTCAGAAAAAGGCTGATTCTGCTGCAAAGAGAGCCCGGCAGGCTGAGAAAAGACGCACTTATAACAAAGCTCGGAAGTCCGAAATCAGAACCAGAATGAAGAAGGCTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTCCAATTGAGAAGCTCATAGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTCGGAACATTACACCGAAACACTGCAGCACACCGAAAATCTCGGCTAGCCAGAAGAAAGAAAGCTGTAGAGATCCACCATGGCTGGTACACCCCTACCTCACCAGCAGCTGCCTGA

Protein sequence

MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSPAAA

Homology

[Close]

BLAST of Cp4.1LG02g01830 vs. Swiss-Prot
Match: RR20_ARATH (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-43
Identity = 114/187 (60.96%), Postives = 134/187 (71.66%), Query Frame = 1


Query: 7   SCFALPSKFGNLSLNASSSCLPVSS-------SSLALKCLSFSSNISVS-AFSDGCLSMS 66
           SC  L S+F  LSL   S   P SS       S+     LSFS ++S   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 67  GAQRPLRYSVVCEAA-PQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLK 126
             Q+P+R  +VCEAA P KKADSAAKRARQAEKRR YNK++KSE RTRMKK +EAL+ LK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAVKV  LH+NT A RKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]

BLAST of Cp4.1LG02g01830 vs. Swiss-Prot
Match: RS20_ACAM1 (30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsT PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-08
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1


Query: 80  SAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR   AE+ R  NKA KS I+T  K+   A+DD K  P    +++  I+  ++  YS
Sbjct: 6   SAKKRILIAERNRLQNKAYKSAIKTFTKRFQAAVDDYKSNPS--DDQLAAIQNEMSVTYS 65

Query: 140 VIDKAVKVGTLHRNTAAHRKSRLARRKKA 169
            IDKAVKVG  HRNT A +K+ LAR  KA
Sbjct: 66  KIDKAVKVGVFHRNTGARKKAGLARILKA 92

[Close]

BLAST of Cp4.1LG02g01830 vs. Swiss-Prot
Match: RS20_CYAA5 (30S ribosomal protein S20 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsT PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 78  ADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEA 137
           + SA KR R +E+ R  NK+ KS +RT MKK ++A+++    P  +++ V  +++ ++ A
Sbjct: 4   SKSALKRIRTSERNRLRNKSYKSAVRTLMKKYLQAVEEYAASPTPENKAV--VDQRMSAA 63

Query: 138 YSVIDKAVKVGTLHRNTAAHRKSRLARRKKAV 170
           YS IDKAVK   LHRN  A +K+RLA+  + V
Sbjct: 64  YSKIDKAVKRSVLHRNNGARKKARLAKALQQV 93

[Close]

BLAST of Cp4.1LG02g01830 vs. Swiss-Prot
Match: RS20_CYAP8 (30S ribosomal protein S20 OS=Cyanothece sp. (strain PCC 8801) GN=rpsT PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-08
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 80  SAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR   AE+ R +NKA KS +RT MKK  EA+      P   +  V  +E+ ++ AYS
Sbjct: 6   SALKRIAVAERNRLHNKAYKSAVRTLMKKYFEAVQAYGNNPTPDNLSV--VEQCMSAAYS 65

Query: 140 VIDKAVKVGTLHRNTAAHRKSRLARRKKAV 170
            IDKAVK   LHRN  A +K+RLA+  K V
Sbjct: 66  KIDKAVKRHVLHRNNGARKKARLAKALKQV 93

[Close]

BLAST of Cp4.1LG02g01830 vs. Swiss-Prot
Match: RS20_THET2 (30S ribosomal protein S20 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsT PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-08
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 76  KKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIA 135
           K+  SA KR RQ+ KRR  NKA+KS I+T  KKA++         E ++EE L   K++ 
Sbjct: 7   KRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQ------EGKAEEAL---KIMR 66

Query: 136 EAYSVIDKAVKVGTLHRNTAAHRKSRLARR 166
           +A S+IDKA K  TLH+N AA RKSRL R+
Sbjct: 67  KAESLIDKAAKGSTLHKNAAARRKSRLMRK 87

[Close]

BLAST of Cp4.1LG02g01830 vs. TrEMBL
Match: A0A0A0KZK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.4e-66
Identity = 146/184 (79.35%), Postives = 159/184 (86.41%), Query Frame = 1


Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAA+ +CF+L SKFGNLSLN  SS +P + SS  L+ LSFSSNIS+SAFS+GCLSM   
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           +R  RYSVVCEAAP+ K DSAAKRARQAEKRR YNKARKSEI+TRMKK +EALD LKKK 
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIE LIAEAYSVIDKAV+ GTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Cp4.1LG02g01830 vs. TrEMBL
Match: A0A067LN37_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15308 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.2e-60
Identity = 138/183 (75.41%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQ 61
           AA   SCFALP+K  NLSLN  ++C   SSSS   + LSFSS +S + F+ GCLSMS  +
Sbjct: 3   AAVLSSCFALPAKLQNLSLN--TTCSTASSSSPTFRSLSFSSALSHNFFNKGCLSMSIVR 62

Query: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121
           RP  YS+VCEAAP+KKADSA KRARQAEKRR YNKARKSEIRTRMKK MEALDDLKKKP+
Sbjct: 63  RPTGYSIVCEAAPKKKADSADKRARQAEKRRVYNKARKSEIRTRMKKVMEALDDLKKKPD 122

Query: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 181
           AQ+EEVLPIEKLIAEAYSVIDKAVKVGTLHRNT A RKSRLARRKK VEIHHGWYTP   
Sbjct: 123 AQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKDVEIHHGWYTPAPV 182

Query: 182 AAA 185
            A+
Sbjct: 183 TAS 183

[Close]

BLAST of Cp4.1LG02g01830 vs. TrEMBL
Match: E0CSG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02230 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.0e-56
Identity = 130/174 (74.71%), Postives = 142/174 (81.61%), Query Frame = 1


Query: 8   CFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQRPLRYS 67
           C ALPSKF  LSLNASSS    SS S+    L FSSN+S + FS G LS+S  + P  +S
Sbjct: 11  CLALPSKFRILSLNASSS----SSCSVPFTSLGFSSNLSQTVFSKGRLSISTIRGPTHHS 70

Query: 68  VVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEV 127
           +VC+AAP +KADSAAKR RQAEKRR YNKARKSEIRTRMKK +E LD LKKKP+AQ+EEV
Sbjct: 71  IVCDAAPMRKADSAAKRVRQAEKRRIYNKARKSEIRTRMKKVLEELDGLKKKPDAQAEEV 130

Query: 128 LPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 182
           LPIEKLIAEAYSVIDKAVKVGTLHRNT A RKSRLARRKKAVEIHHGWYTP  P
Sbjct: 131 LPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPAPP 180

[Close]

BLAST of Cp4.1LG02g01830 vs. TrEMBL
Match: B9T1X1_RICCO (30S ribosomal protein S20, putative OS=Ricinus communis GN=RCOM_0108620 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.6e-55
Identity = 130/183 (71.04%), Postives = 152/183 (83.06%), Query Frame = 1


Query: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQ 61
           AA   SCF++P+K  +LSL  +SS    + +  AL+ LSFSS IS   F+ GCLSMS  +
Sbjct: 4   AAVLSSCFSVPTKLKSLSLTTTSSS---TITYPALRSLSFSSAISHDVFNKGCLSMSIVK 63

Query: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121
           RP+ +S+VCEAAP+K+ADSAAKRARQAEKRR Y+KA KSE+RTRMKK +EALDDL+KK +
Sbjct: 64  RPIGHSIVCEAAPKKRADSAAKRARQAEKRRIYHKAHKSEVRTRMKKVLEALDDLRKKSD 123

Query: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 181
           AQ+EEVLPIEKLIAEAYSVIDKAVKVGTLHRNT A RKSRLARRKKAVEIHHGWYTP +P
Sbjct: 124 AQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTP-AP 182

Query: 182 AAA 185
           A A
Sbjct: 184 AEA 182

[Close]

BLAST of Cp4.1LG02g01830 vs. TrEMBL
Match: A0A067E2G1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029900mg PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.5e-54
Identity = 127/176 (72.16%), Postives = 144/176 (81.82%), Query Frame = 1


Query: 4   ASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQRP 63
           +S SC  + SKF  LSLN +SS     SS    K L FS+ +S + FS G L+MS  QRP
Sbjct: 7   SSSSCLTIQSKFKTLSLNNNSSS---HSSFATFKSLCFSNKLSHNVFSTGSLTMSPIQRP 66

Query: 64  LRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQ 123
           +R+SVVCEAA +KKADSAAKRARQAEKRR YNK+RKSE++TRMKK +EALD L+KKP+AQ
Sbjct: 67  MRHSVVCEAATKKKADSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQ 126

Query: 124 SEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPT 180
            EEVLP+EKLIAEAYSVIDKAVKVGTLHRNT A RKSRLARRKKAVEIHHGWYTPT
Sbjct: 127 PEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPT 179

[Close]

BLAST of Cp4.1LG02g01830 vs. TAIR10
Match: AT3G15190.1 (AT3G15190.1 chloroplast 30S ribosomal protein S20, putative)

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-44
Identity = 114/187 (60.96%), Postives = 134/187 (71.66%), Query Frame = 1


Query: 7   SCFALPSKFGNLSLNASSSCLPVSS-------SSLALKCLSFSSNISVS-AFSDGCLSMS 66
           SC  L S+F  LSL   S   P SS       S+     LSFS ++S   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 67  GAQRPLRYSVVCEAA-PQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLK 126
             Q+P+R  +VCEAA P KKADSAAKRARQAEKRR YNK++KSE RTRMKK +EAL+ LK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAVKV  LH+NT A RKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]

BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: gi|659127427|ref|XP_008463697.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 8.3e-67
Identity = 148/184 (80.43%), Postives = 161/184 (87.50%), Query Frame = 1


Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAA+ +CFAL SKFGNLSLN  SS +P + SS  L+ LSFSSNIS+SAFS+GCLSM   
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           +R  RYSVVCEAAP+ KADSAAKRARQAEKRR YNKARKSEI+TRMKK +EALD LKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIEKL+AEAYSVIDKAV+ GTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: gi|449456625|ref|XP_004146049.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 9.1e-66
Identity = 146/184 (79.35%), Postives = 159/184 (86.41%), Query Frame = 1


Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAA+ +CF+L SKFGNLSLN  SS +P + SS  L+ LSFSSNIS+SAFS+GCLSM   
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           +R  RYSVVCEAAP+ K DSAAKRARQAEKRR YNKARKSEI+TRMKK +EALD LKKK 
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIE LIAEAYSVIDKAV+ GTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]

BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: gi|802540417|ref|XP_012076334.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas])

HSP 1 Score: 238.8 bits (608), Expect = 7.5e-60
Identity = 138/183 (75.41%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQ 61
           AA   SCFALP+K  NLSLN  ++C   SSSS   + LSFSS +S + F+ GCLSMS  +
Sbjct: 3   AAVLSSCFALPAKLQNLSLN--TTCSTASSSSPTFRSLSFSSALSHNFFNKGCLSMSIVR 62

Query: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121
           RP  YS+VCEAAP+KKADSA KRARQAEKRR YNKARKSEIRTRMKK MEALDDLKKKP+
Sbjct: 63  RPTGYSIVCEAAPKKKADSADKRARQAEKRRVYNKARKSEIRTRMKKVMEALDDLKKKPD 122

Query: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 181
           AQ+EEVLPIEKLIAEAYSVIDKAVKVGTLHRNT A RKSRLARRKK VEIHHGWYTP   
Sbjct: 123 AQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKDVEIHHGWYTPAPV 182

Query: 182 AAA 185
            A+
Sbjct: 183 TAS 183

[Close]

BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: gi|225461526|ref|XP_002285149.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Vitis vinifera])

HSP 1 Score: 225.3 bits (573), Expect = 8.6e-56
Identity = 130/174 (74.71%), Postives = 142/174 (81.61%), Query Frame = 1


Query: 8   CFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQRPLRYS 67
           C ALPSKF  LSLNASSS    SS S+    L FSSN+S + FS G LS+S  + P  +S
Sbjct: 11  CLALPSKFRILSLNASSS----SSCSVPFTSLGFSSNLSQTVFSKGRLSISTIRGPTHHS 70

Query: 68  VVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEV 127
           +VC+AAP +KADSAAKR RQAEKRR YNKARKSEIRTRMKK +E LD LKKKP+AQ+EEV
Sbjct: 71  IVCDAAPMRKADSAAKRVRQAEKRRIYNKARKSEIRTRMKKVLEELDGLKKKPDAQAEEV 130

Query: 128 LPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 182
           LPIEKLIAEAYSVIDKAVKVGTLHRNT A RKSRLARRKKAVEIHHGWYTP  P
Sbjct: 131 LPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPAPP 180

[Close]

BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: gi|255582939|ref|XP_002532240.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Ricinus communis])

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-54
Identity = 130/183 (71.04%), Postives = 152/183 (83.06%), Query Frame = 1


Query: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQ 61
           AA   SCF++P+K  +LSL  +SS    + +  AL+ LSFSS IS   F+ GCLSMS  +
Sbjct: 4   AAVLSSCFSVPTKLKSLSLTTTSSS---TITYPALRSLSFSSAISHDVFNKGCLSMSIVK 63

Query: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121
           RP+ +S+VCEAAP+K+ADSAAKRARQAEKRR Y+KA KSE+RTRMKK +EALDDL+KK +
Sbjct: 64  RPIGHSIVCEAAPKKRADSAAKRARQAEKRRIYHKAHKSEVRTRMKKVLEALDDLRKKSD 123

Query: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 181
           AQ+EEVLPIEKLIAEAYSVIDKAVKVGTLHRNT A RKSRLARRKKAVEIHHGWYTP +P
Sbjct: 124 AQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTP-AP 182

Query: 182 AAA 185
           A A
Sbjct: 184 AEA 182

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g01830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR20_ARATH	3.7e-43	60.96	30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=2 S...	[more]
RS20_ACAM1	3.9e-08	47.19	30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsT PE...	[more]
RS20_CYAA5	5.1e-08	41.30	30S ribosomal protein S20 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsT PE=3 SV=...	[more]
RS20_CYAP8	6.6e-08	46.67	30S ribosomal protein S20 OS=Cyanothece sp. (strain PCC 8801) GN=rpsT PE=3 SV=1	[more]
RS20_THET2	6.6e-08	48.89	30S ribosomal protein S20 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / ...	[more]

BLAST of Cp4.1LG02g01830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZK9_CUCSA	6.4e-66	79.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G630000 PE=3 SV=1	[more]
A0A067LN37_JATCU	5.2e-60	75.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15308 PE=3 SV=1	[more]
E0CSG3_VITVI	6.0e-56	74.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02230 PE=3 SV=...	[more]
B9T1X1_RICCO	8.6e-55	71.04	30S ribosomal protein S20, putative OS=Ricinus communis GN=RCOM_0108620 PE=3 SV=...	[more]
A0A067E2G1_CITSI	1.5e-54	72.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029900mg PE=3 SV=1	[more]

BLAST of Cp4.1LG02g01830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15190.1	2.1e-44	60.96	chloroplast 30S ribosomal protein S20, putative	[more]

BLAST of Cp4.1LG02g01830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127427\|ref\|XP_008463697.1\|	8.3e-67	80.43	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo]	[more]
gi\|449456625\|ref\|XP_004146049.1\|	9.1e-66	79.35	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis sativus]	[more]
gi\|802540417\|ref\|XP_012076334.1\|	7.5e-60	75.41	PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]	[more]
gi\|225461526\|ref\|XP_002285149.1\|	8.6e-56	74.71	PREDICTED: 30S ribosomal protein S20, chloroplastic [Vitis vinifera]	[more]
gi\|255582939\|ref\|XP_002532240.1\|	1.2e-54	71.04	PREDICTED: 30S ribosomal protein S20, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002583	Ribosomal_S20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0010467	gene expression
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g01830.1	Cp4.1LG02g01830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002583	Ribosomal protein S20	PRODOM	PD004231		coord: 95..163 score: 2.
IPR002583	Ribosomal protein S20	GENE3D	G3DSA:1.20.58.110		coord: 78..180 score: 4.8
IPR002583	Ribosomal protein S20	HAMAP	MF_00500	Ribosomal_S20	coord: 57..168 score: 15
IPR002583	Ribosomal protein S20	PFAM	PF01649	Ribosomal_S20p	coord: 79..165 score: 7.4
IPR002583	Ribosomal protein S20	TIGRFAMs	TIGR00029	TIGR00029	coord: 78..164 score: 6.3
IPR002583	Ribosomal protein S20	unknown	SSF46992	Ribosomal protein S20	coord: 79..181 score: 4.84
None	No IPR available	unknown	Coil	Coil	coord: 99..119 scor
None	No IPR available	PANTHER	PTHR33398	FAMILY NOT NAMED	coord: 1..184 score: 4.9
None	No IPR available	PANTHER	PTHR33398:SF2	30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC	coord: 1..184 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g01830	Cucsa.122920	Cucumber (Gy14) v1	cgycpeB0310
Cp4.1LG02g01830	CmaCh09G008450	Cucurbita maxima (Rimu)	cmacpeB046
Cp4.1LG02g01830	CmaCh01G012230	Cucurbita maxima (Rimu)	cmacpeB490
Cp4.1LG02g01830	CmoCh01G012760	Cucurbita moschata (Rifu)	cmocpeB448
Cp4.1LG02g01830	CmoCh09G008390	Cucurbita moschata (Rifu)	cmocpeB021
Cp4.1LG02g01830	Cla023360	Watermelon (97103) v1	cpewmB581
Cp4.1LG02g01830	Csa4G630000	Cucumber (Chinese Long) v2	cpecuB565
Cp4.1LG02g01830	MELO3C025609	Melon (DHL92) v3.5.1	cpemeB532
Cp4.1LG02g01830	ClCG11G017820	Watermelon (Charleston Gray)	cpewcgB488
Cp4.1LG02g01830	CSPI04G23240	Wild cucumber (PI 183967)	cpecpiB567
Cp4.1LG02g01830	Lsi04G020480	Bottle gourd (USVL1VR-Ls)	cpelsiB456
Cp4.1LG02g01830	MELO3C025609.2	Melon (DHL92) v3.6.1	cpemedB631
Cp4.1LG02g01830	CsaV3_4G033460	Cucumber (Chinese Long) v3	cpecucB0702
Cp4.1LG02g01830	Bhi09G002831	Wax gourd	cpewgoB0727
Cp4.1LG02g01830	CsGy4G021620	Cucumber (Gy14) v2	cgybcpeB540
Cp4.1LG02g01830	Carg14709	Silver-seed gourd	carcpeB0431
Cp4.1LG02g01830	Carg17080	Silver-seed gourd	carcpeB0242

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g01830	Cp4.1LG06g06600	Cucurbita pepo (Zucchini)	cpecpeB460

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g01830	Cucurbita maxima (Rimu)	cmacpeB243