Cla97C11G223850 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C11G223850
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	30S ribosomal protein S20, chloroplastic
Location	Cla97Chr11 : 29646782 .. 29650517 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGTGAGTTCTTATGGGTTTCTTCCCCCCCCCCCCCCCCCACCCCTTTGTATTATTTGTGTTGTAGAAAAGCTACGAAATTGTTTGAGGAAGTATCGAATTGCTAGACTTACTTTTGTCCATTTTCGTACAGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTACCTAATTTTGGCTGGTTTGTACGCATTGGAATATATTAAAATCTATTAAGAATGATGTACTCCCGATATCATTTTTTCTCGGAATATTATTATTATTTTGGATAAGAACTAATTTCACTGATGGTATGAATTTACAAAAGAATGGGAAAATCCCCAAAGGAGAGATTGCAAATGACCATTACAGTTTGAAATGAGACTAGTATAGCTGTAGTGATGAAATAATGGAGAGAGCATTTACACTAAGTCGCTATAGCATAAAAACGAATTATAATGAGAGGGTTTTTCGTCTTGGAAGACTCTTCTATTCCTTTCTTGCCAAATGTTCCAGCATAACGCTCTAATGAAATTTTCCCATAAAAGCTTTGTCTCCTTTTGGAGCTTGTCATGGGTTTTGATGGCTTTCTTTTATAGCTCCCAAAGATAAAACTTCATCTTCTTTGGATAATGAACCTTCCGTTTCACATGATACAGAGACTAGGTTCCATCAATGGAGGGGGATAAATCATACAAAAAAGAGCTATTTGAAAAAAAGCTAGTGGGTTGGGTTCTAGCTTCCAAAGACCCCTGTCGGTCTGTTATGAAAGGAAACAGCAGCTAGAATGTGTAAAGGAGCTTCATATTCTCCAGTTTCAGCCTCTCTGATTCCTTCTCAATCTTCGGTTCCAATACCCAATGTTTGTGTTCCAAAAATCTTTTACAGGCCCACTCTTGCTGTGAGAAAGGGCAAAAATAAATGGGGATTGTGATGCAACGGGTTCATTCTCCAGCCAGATGTCTTACCAAAAAGAAACGTTTGATCCATCCCCAAGAACGTAGGAAGTTCTATCATGAATCAGAAAGCAATGCCTCATGATGGATCTCAGAGTATCATACTAGAAATGCTATTGGACTGAAACCAAACAGCCCAAGTCCTAACAGCTTCTCTGCTTGCCTAGAAACCTTATCTTTGGCACTGAAAAGTTAAAGCCGGTTTGATAACCATTTGGTTTTTGAAAATCGAGCATATAAACACTATTTTTACCAATTAGTTTCTTTATTTTGTTGTCTATATTTTCAGAGTGTTCTCAAACTCCAATCTAAGTTTTGAAAATTGAAACATATAGGTTCCTTTTGAAAAATTGGGAAGACACAAAGAAAGTCTAGGATTTTCAATGGAAAGGAAAAATCCCCAGGGGGTGTTCTTGAATCATCCATTTTCAATGCCCTTTTTGGTGTAAAAATATACAGCCCCTCAATAGTTACATTTTGAATTTCCTTGTATCTAATTGGAGGAATCTTTTGTAATCCTATTTATGGGCTCATTTTGTACTCTTTGTAAATTACATTCATCAATGAAATAGTTTCTTAAAAAAAATGGGAAGAAACAAGTATAAATTTCAATACAGAACGAAATCGTTAACAAACAAGCCATAGTTTTAAAAAAATAGTTTTTGTTCAGAATTTGGCTAAGAATCTTGATGTTTATTCAAGAAAGATGTTAAAGAATTTGTGAGAAAAACATCACAATCTTCAAAAACCAAAAACCAAATATTTATCAAATGGGTATAGAATTTTTAGGTAATTTTTATTTTAGACTGGTTTGTGCCTACTTTGTATGTACCTTTAGACAAACTGAGCTATATCAAAACTCAAGGGGTCAAGTACCTTTTTGTGTTCTTGAAGAGTTAAGATATAATTGTTTTTCTTAATAATGATTATTTTTATTTTTTTAGAAATAACTACTAGGGTCTCTCTAACCCTCTAAAGACTGTGTTATTTCTCTCTCCTCATATTTACAGACACACACGCAAGTACACATAGATAAGGCCAATGGTAGCTTGTTGGTTTGGATGCTTGATGTGAAAATCTGATCAGTAGAAATTCTTATTTTTCAGAAATGATTGTAAACTCTGCTCACCACTTAAAAAAAATACATGAAGATGACAATGGCTACTACAGGAAAATTTATGAGTAACCAAACTGATTTTATCATTTATAAAAGTTATCATTCAAGTTATAAGTTGGACTTTTGTTGTATATCAGATAGTGTAAACTATCAAGCATCCCAACTTGATGGACAATTTTAAAAGGACTAGAAAGAAAAGTCTGGTAAGTGGTAAAGTTGATCAAATATTCTTGTCCAGTAGAGATTGCTTCTGATTGGCCTGGGTAGGTTCTCTAGGTGGTTTTCATGTTGGTTATGACTGAAGTTTAACTAATTTCCTTCAAAAAACATTTCAGCCTCTCTCATAGAGTCTTAAACTTAGACCATTAAGGTGTTTGAATGCGCCTTTGGCTTAGGTGTGTAGATTTATTTGAATCTTTGGTTGTATCAACTTTCTTTGGATGAGTTATGCAACATGACTAACATCTTTTCCTGTTCTAATAATAAGTGGCCTTTGTGTTATCTGGTGGATCTTAGAGGTACCTAAGCTGTAAAATCTTGTGTGACCAATGATTAAAAGGATTTTGTTTCTTTTCTGGTTTCTCTAGGGCTAATTCTGTTTGCAAAGTTTCTTTGGTCATCCTTCCAAGAAAACATAAGCGATTTGGCAATGCTTCAGAGTTTTCTTCTGGGAAATTTGGTCAACAAGGAATGTGTTTTTGAGTTATGAAGGCAGCATTTGATCAAGGGAATTGGAAAATGTTCTACTTGAAATTTCTCCAAATTATTATATTTCTTTATCATTTCTTAACTTCTTGGTGCCAAGAGAGGCAGTAGGCAGACGGGATGGAGGGTGTTTCCCATTTATAATTAAGACTTCATCCTTTTCTTGTTTGAGCAGAAGAAAAGGTTGGCTTTCCTCGTTGTACCTACCAACTGGCAAAACTCTCCATATTTTTTTTAATTGAATCTCTAAAGAGATGCTGCTTTCTGATGCAATGGGTTGGTTTCTTTTTCATGGCTGATATCTGCTAAAGGACAGGACTAAAGCGTAATCTTCATATGGTTGCACAACACATCCTCTACATCCTTGCTTTTGCATTTTGTGAAGAAAAAGAGAAGATTTTCCGTTTCTTTCCAGAACTTGTCAGCATAATAATGACCTCTCCCTCTTACAATTCCAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGA

mRNA sequence

ATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGA

Coding sequence (CDS)

ATGGCGGCAACTGCAATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGTTTCCCCATCTTCTTCGACCTTCAGAACTCTCACTTTCTCCTCCAACATTTCAGTTTCCGCCTTCTCCAGTGGGTGCCTGTCGATAAGTAAAGCTCAGAGGCCACATCGTTACTCTGTGGTCTGCGAGGCAGCTCCTAAGACCAAGGCTGATTCTGCTGCAAAGAGGGCTCGGCAGGCTGAGAAAAGACGCATTTACAATAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTATTGGAGGCTTTAGATGGTCTCAAGAAGAAACCTGAGGCTCAGTCAGAGGAAGTCCTCCCAATTGAGAAACTCATTGCAGAAGCATACTCGGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCAAGACGAAAATCTCGGCTCGCCAGGAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGTATGA

Protein sequence

MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKAQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAV

Homology

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BLAST of Cla97C11G223850 vs. NCBI nr
Match: XP_008463697.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

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BLAST of Cla97C11G223850 vs. NCBI nr
Match: XP_004146049.1 (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105.1 hypothetical protein Csa_4G630000 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 7.9e-74
Identity = 157/183 (85.79%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA AI+CF+L SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE LIAEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

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BLAST of Cla97C11G223850 vs. NCBI nr
Match: XP_022981947.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 155/183 (84.70%), Postives = 167/183 (91.26%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA + SCFALPSKF NLSLNASSSC+PVS SS   R+L+FSSN+SVSAFS GCLS+S A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGA 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QRP RYSVVCEAAP+ KADSAAKRARQAEKRR YNKARKSEI+TR+KK +EALD LKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLP+EKLIAEAYSVIDKAV+VGTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

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BLAST of Cla97C11G223850 vs. NCBI nr
Match: XP_022941386.1 (30S ribosomal protein S20, chloroplastic [Cucurbita moschata])

HSP 1 Score: 282.7 bits (722), Expect = 8.8e-73
Identity = 155/183 (84.70%), Postives = 167/183 (91.26%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA + SCFALPSKF NLSLNAS SC+PVS SS   ++L+FSSNISVSAFS+GCLS+S A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QRP RYSVVCEAAP+ KADSAAKRARQAEKRR YNKARKSEI+TR+KK +EALD LKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKLIAEAYSVIDKAV+VGTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

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BLAST of Cla97C11G223850 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 254.2 bits (648), Expect = 3.3e-64
Identity = 148/184 (80.43%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MAATA-ISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISK 60
           MAATA ISCFALPSKFRNLSLNASSS +P+SPSSST R+L+FSSN+SVSAFS+GCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADS                   SEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSXXXXXXXXXXXXXXXXXXXSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAA 184
           SPAA
Sbjct: 181 SPAA 183

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BLAST of Cla97C11G223850 vs. TrEMBL
Match: tr|A0A1S3CJU9|A0A1S3CJU9_CUCME (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.3e-75
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA A++CFAL SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

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BLAST of Cla97C11G223850 vs. TrEMBL
Match: tr|A0A0A0KZK9|A0A0A0KZK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 5.3e-74
Identity = 157/183 (85.79%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MAA AI+CF+L SKF NLSLN  SS IP +PSSST R+L+FSSNIS+SAFS+GCLS+ K 
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R HRYSVVCEAAPK+K DSAAKRARQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIE LIAEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAA 184
           PAA
Sbjct: 181 PAA 183

[Close]

BLAST of Cla97C11G223850 vs. TrEMBL
Match: tr|A0A067LN37|A0A067LN37_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15308 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 6.7e-61
Identity = 134/177 (75.71%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 2   AATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKAQ 61
           AA   SCFALP+K +NLSLN  ++C   S SS TFR+L+FSS +S + F+ GCLS+S  +
Sbjct: 3   AAVLSSCFALPAKLQNLSLN--TTCSTASSSSPTFRSLSFSSALSHNFFNKGCLSMSIVR 62

Query: 62  RPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPE 121
           RP  YS+VCEAAPK KADSA KRARQAEKRR+YNKARKSEI+TR+KKV+EALD LKKKP+
Sbjct: 63  RPTGYSIVCEAAPKKKADSADKRARQAEKRRVYNKARKSEIRTRMKKVMEALDDLKKKPD 122

Query: 122 AQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
           AQ+EEVLPIEKLIAEAYSVIDKAV+VGTLHRNT ARRKSRLARRKK VEIHHGWYTP
Sbjct: 123 AQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKDVEIHHGWYTP 177

[Close]

BLAST of Cla97C11G223850 vs. TrEMBL
Match: tr|E0CSG3|E0CSG3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02230 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-58
Identity = 138/184 (75.00%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 1   MAATAIS---CFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSI 60
           MA  AI    C ALPSKFR LSLNASSS    S  S  F +L FSSN+S + FS G LSI
Sbjct: 1   MAGAAIGVAHCLALPSKFRILSLNASSS----SSCSVPFTSLGFSSNLSQTVFSKGRLSI 60

Query: 61  SKAQRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLK 120
           S  + P  +S+VC+AAP  KADSAAKR RQAEKRRIYNKARKSEI+TR+KKVLE LDGLK
Sbjct: 61  STIRGPTHHSIVCDAAPMRKADSAAKRVRQAEKRRIYNKARKSEIRTRMKKVLEELDGLK 120

Query: 121 KKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYT 180
           KKP+AQ+EEVLPIEKLIAEAYSVIDKAV+VGTLHRNT ARRKSRLARRKKAVEIHHGWYT
Sbjct: 121 KKPDAQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYT 180

Query: 181 PDSP 182
           P  P
Sbjct: 181 PAPP 180

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BLAST of Cla97C11G223850 vs. TrEMBL
Match: tr|A0A067E2G1|A0A067E2G1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029900mg PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.6e-57
Identity = 128/172 (74.42%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 7   SCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKAQRPHRY 66
           SC  + SKF+ LSLN +SS      S +TF++L FS+ +S + FS+G L++S  QRP R+
Sbjct: 10  SCLTIQSKFKTLSLNNNSSS---HSSFATFKSLCFSNKLSHNVFSTGSLTMSPIQRPMRH 69

Query: 67  SVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEE 126
           SVVCEAA K KADSAAKRARQAEKRRIYNK+RKSE+KTR+KKVLEALDGL+KKP+AQ EE
Sbjct: 70  SVVCEAATKKKADSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEE 129

Query: 127 VLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
           VLP+EKLIAEAYSVIDKAV+VGTLHRNT ARRKSRLARRKKAVEIHHGWYTP
Sbjct: 130 VLPVEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTP 178

[Close]

BLAST of Cla97C11G223850 vs. Swiss-Prot
Match: sp|P82130|RR20_SPIOL (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 8.2e-46
Identity = 111/178 (62.36%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MAATAISCFALPSKFRNLSLNASSSCIPVSPSSSTFRTLTFSSNISVSAFSSGCLSISKA 60
           MA  +  C ++ SK  NLS   SS+  P    +S+ + LTFS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSF--SSTQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  QRPHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QR   +SVVCE A   KADSAAKR RQAE RR+ NKARKSE+KTR++KV EALD LKKK 
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]

BLAST of Cla97C11G223850 vs. Swiss-Prot
Match: sp|Q9ASV6|RR20_ARATH (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 7   SCFALPSKFRNLSLNASSSCIPVSP-SSSTFRTLTFSSNISVSAFSSGCLSISK----AQ 66
           SC  L S+F+ LSL   S   P S  S+    + T SS++S S   S C++ S      Q
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  RPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 126
           +P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLKKK 
Sbjct: 70  KPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKT 129

Query: 127 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 184
           +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY PD+
Sbjct: 130 DAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDA 189

[Close]

BLAST of Cla97C11G223850 vs. Swiss-Prot
Match: sp|Q3M5D2|RS20_ANAVT (30S ribosomal protein S20 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsT PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 7   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 66

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 67  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 95

[Close]

BLAST of Cla97C11G223850 vs. Swiss-Prot
Match: sp|A7HJB0|RS20_FERNB (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-09
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K +IK VL A+        AQ +    I +L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKA 169
            IDKA + G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]

BLAST of Cla97C11G223850 vs. Swiss-Prot
Match: sp|Q8YWL3|RS20_NOSS1 (30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-09
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 80  SAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KRA+ AE+ R+ NK  KS +KT +K  L A+      P  +S++    +  +A AYS
Sbjct: 6   SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYAANPTPESKQ--EAQTRLAAAYS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKAVE 171
            IDKAV+ G LH N  AR+KSRLA + K +E
Sbjct: 66  RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94

[Close]

BLAST of Cla97C11G223850 vs. TAIR10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative)

HSP 1 Score: 184.5 bits (467), Expect = 5.9e-47
Identity = 111/183 (60.66%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 7   SCFALPSKFRNLSLNASSSCIPVSP-SSSTFRTLTFSSNISVSAFSSGCLSISK----AQ 66
           SC  L S+F+ LSL   S   P S  S+    + T SS++S S   S C++ S      Q
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQ 69

Query: 67  RPHRYSVVCE-AAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 126
           +P R  +VCE AAP  KADSAAKRARQAEKRR+YNK++KSE +TR+KKVLEAL+GLKKK 
Sbjct: 70  KPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKT 129

Query: 127 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 184
           +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY PD+
Sbjct: 130 DAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDA 189

The following BLAST results are available for this feature:

BLAST of Cla97C11G223850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463697.1	1.9e-75	86.89	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis melo]	[more]
XP_004146049.1	7.9e-74	85.79	PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis sativus] >KGN55105....	[more]
XP_022981947.1	2.3e-73	84.70	30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]	[more]
XP_022941386.1	8.8e-73	84.70	30S ribosomal protein S20, chloroplastic [Cucurbita moschata]	[more]
XP_022976587.1	3.3e-64	80.43	30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Cla97C11G223850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJU9\|A0A1S3CJU9_CUCME	1.3e-75	86.89	30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779...	[more]
tr\|A0A0A0KZK9\|A0A0A0KZK9_CUCSA	5.3e-74	85.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630000 PE=3 SV=1	[more]
tr\|A0A067LN37\|A0A067LN37_JATCU	6.7e-61	75.71	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15308 PE=3 SV=1	[more]
tr\|E0CSG3\|E0CSG3_VITVI	1.4e-58	75.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02230 PE=3 SV=...	[more]
tr\|A0A067E2G1\|A0A067E2G1_CITSI	2.6e-57	74.42	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029900mg PE=3 SV=1	[more]

BLAST of Cla97C11G223850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82130\|RR20_SPIOL	8.2e-46	62.36	30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P...	[more]
sp\|Q9ASV6\|RR20_ARATH	1.1e-45	60.66	30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2...	[more]
sp\|Q3M5D2\|RS20_ANAVT	4.7e-09	45.05	30S ribosomal protein S20 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ...	[more]
sp\|A7HJB0\|RS20_FERNB	4.7e-09	47.19	30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
sp\|Q8YWL3\|RS20_NOSS1	4.7e-09	45.05	30S ribosomal protein S20 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]

BLAST of Cla97C11G223850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15190.1	5.9e-47	60.66	chloroplast 30S ribosomal protein S20, putative	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR036510	Ribosomal_S20_sf
IPR002583	Ribosomal_S20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G223850.1	Cla97C11G223850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..119
IPR002583	Ribosomal protein S20	PFAM	PF01649	Ribosomal_S20p	coord: 79..165 e-value: 6.8E-23 score: 81.0
IPR002583	Ribosomal protein S20	TIGRFAM	TIGR00029	TIGR00029	coord: 78..164 e-value: 3.0E-18 score: 64.1
IPR002583	Ribosomal protein S20	PANTHER	PTHR33398	FAMILY NOT NAMED	coord: 71..179
IPR002583	Ribosomal protein S20	PRODOM	PD004231		coord: 93..154 e-value: 6.0E-4 score: 100.0
IPR002583	Ribosomal protein S20	HAMAP	MF_00500	Ribosomal_S20	coord: 73..168 score: 16.088
IPR036510	Ribosomal protein S20 superfamily	GENE3D	G3DSA:1.20.58.110		coord: 72..176 e-value: 2.7E-29 score: 103.3
IPR036510	Ribosomal protein S20 superfamily	SUPERFAMILY	SSF46992	Ribosomal protein S20	coord: 79..181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C11G223850	Cla023360	Watermelon (97103) v1	wmwmbB358
Cla97C11G223850	Csa4G630000	Cucumber (Chinese Long) v2	cuwmbB279
Cla97C11G223850	MELO3C025609	Melon (DHL92) v3.5.1	mewmbB467
Cla97C11G223850	ClCG11G017820	Watermelon (Charleston Gray)	wcgwmbB064
Cla97C11G223850	CSPI04G23240	Wild cucumber (PI 183967)	cpiwmbB286
Cla97C11G223850	Cucsa.122920	Cucumber (Gy14) v1	cgywmbB189
Cla97C11G223850	CmaCh01G012230	Cucurbita maxima (Rimu)	cmawmbB454
Cla97C11G223850	CmaCh09G008450	Cucurbita maxima (Rimu)	cmawmbB020
Cla97C11G223850	CmoCh09G008390	Cucurbita moschata (Rifu)	cmowmbB008
Cla97C11G223850	CmoCh01G012760	Cucurbita moschata (Rifu)	cmowmbB436
Cla97C11G223850	Lsi04G020480	Bottle gourd (USVL1VR-Ls)	lsiwmbB266
Cla97C11G223850	CsGy4G021620	Cucumber (Gy14) v2	cgybwmbB265
Cla97C11G223850	MELO3C025609.2	Melon (DHL92) v3.6.1	medwmbB460
Cla97C11G223850	Carg17080	Silver-seed gourd	carwmbB0175
Cla97C11G223850	Carg14709	Silver-seed gourd	carwmbB0321
Cla97C11G223850	CsaV3_4G033460	Cucumber (Chinese Long) v3	cucwmbB281
Cla97C11G223850	Bhi09G002831	Wax gourd	wgowmbB560

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C11G223850	Silver-seed gourd	carwmbB0680
Cla97C11G223850	Cucumber (Gy14) v2	cgybwmbB024
Cla97C11G223850	Cucumber (Gy14) v1	cgywmbB199
Cla97C11G223850	Cucurbita maxima (Rimu)	cmawmbB099
Cla97C11G223850	Cucurbita maxima (Rimu)	cmawmbB219
Cla97C11G223850	Cucurbita maxima (Rimu)	cmawmbB340
Cla97C11G223850	Cucurbita maxima (Rimu)	cmawmbB410
Cla97C11G223850	Cucurbita moschata (Rifu)	cmowmbB203
Cla97C11G223850	Wild cucumber (PI 183967)	cpiwmbB023
Cla97C11G223850	Cucumber (Chinese Long) v3	cucwmbB022
Cla97C11G223850	Cucumber (Chinese Long) v2	cuwmbB023
Cla97C11G223850	Bottle gourd (USVL1VR-Ls)	lsiwmbB169
Cla97C11G223850	Watermelon (Charleston Gray)	wcgwmbB296
Cla97C11G223850	Watermelon (97103) v1	wmwmbB153